G38851


Basic Information

Item Value
gene id G38851
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24504831 ~ 24510224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52366
TTTAAAGCAAAAAACGATTTATTTTCAACAAAAGGATTTGAAATAAAAGGAGACCGAACAAATCCACACTGAAAAACATTCATGCATCATTCCAGGCACAGTGACAAACAACCAGTGTACAGAATCATATTGTTCACATCATTTGAGAGAGACCGGAACAgcatataaacattcaaacaaaCATTTGTTGTTATTCAAATTACGAAACATGCATTGATTATTAACAGCATGCTTCTTTCACAAAAGTAAATGatttaaagaataaacaaataaacagaaaagaaaCAACTGTTCAAACAgtccataaaataaaataaaagtaaaagtgtacaaagtttatatatgtataaacacataaacacacacctatCAGCCATAGCAATAAAaccactgacaggtgaagtgagCCCCACAGATCATCTGATTCCAATGCCACATATCGAACTGCCAGATTTTACCCTAGATGACGGAGTCAGAACATCTCCTATTCCTTAAATGCAATAATCACTACATAAAAAAGTGCCCAAGAAAGGACAACCGATGGACTGATCGCAGGGTCATGGGCACCCAAGGCTCAATGATGCTCATGAAGGCTCATCCCACCTCACAACCTGCAGGAACTCTTGGCATCTTGGAACCAGAGACCACAGAACACCTTCAGAGGTACTGTGTAATCCATATTACTGGTTAACATACATATGGACTGGTTTAGTGGCGGTAGGAGGACAAAGACATAattaggcaggtggttttaatgttctggctgatcagtgtatatCTGATATGGGTTATAttctttatagaataaataaaacacagcagaaCTGTTAGTCAGGTTAAATAAAAGATGCACTCTGCGATTTTAGAGTCACCACCCTTTGTGCTGTCATACCAAAACCTTGAAACAGACCAGCATATactgtttaaacattttataatgaatggaccaataaaaatgaaacaaaataaaatatgtaaatgtgaCACTGAAGTTAAAGAGACGTTCTggacaaaatgaaaaattactGTCGCTACATGTGCTGTAAACATGCCTACTCAACTCCACAATCCTCCAGCGGTAGACAGTAAtcaagtaaatgtaatgtgttacagtattCGTACTGAAGTATCTGCATTTTTTACTTGAACTACATTTTAAACTCACTCCACTACTTTGTGTAAAATCTTTACCTTTGGTTTATGTGTACATAATGAAAAAGGCATGTACACCAACAGCGTACACTTTGTCTTGATCTGTTACATACAGTAGCGACATTTTGGGAGTGTCTATGGcggcaataaataataaatgatattgaCTATACAGATACAGAACAGTAAAGGAAgctcatgtttttatttattttttctaatttttattttcattttcaaggCCAATTAACCAaaacactcattaggactccccctatcactagtgatgccccaacaccaggagggtgaagactagcacatgcctcctctgatacaggtgaagtcagccaccgtctcatttcaaactgctgctgatgcagcattaccaagcagcatcacagcgcgctcggaggaaagcgccgGAAGATCATcttacagacgccttgtgctgatcaacatcacccctTGGAGTGATGTAGGGAAATAGTGccctctacccacccagagagagcagggccaattgagctcactcagggctctggtagccaatgacaagctacataaacaggattcgaaccagccatcttctgatcatagtgctTTAGCCCGCTGGAACACTCGGAGCTCCAAAAGCTCATTTGTGAACACCACCTCTACAGCAGACACATTTCCACAAATATCGAAAGAACAAAGGCAGAAAATAGGAAATGGCAGTtaaggggaactgtggaagtcaagGCATGATCTGGAAGACCTTATGAGCTGACCAGAAAGACAAAGCCGACCCCATATATAACTGCAAAGAACCTCCTAAAAGATTTGACAAACCCAGGTGAGGTGTTGCACAACTCAACcagaaatacataaaattatatatttgcaGTAGTATGTGAACTATATAATCTTAGTTATACAGTGCCTTAAAAATGTATCCATACCCCTTTTTCCACGTTACATTCACAGACGTAAATGTATGTTATTGGAATTTTATATGATAGACCAACACTAAGTGGCAAGTAGtgagaataaaataatacagttcatatttttcagaaatgttaatgaataaaaatctgaaaagtgtggtgtttgtttgtattCAGCCCTCTGTACTTTGATACCCCTAACAATAAATTCCAGCATGAAAAATTACCTACAGAGGGTAAGTCACGAAATTAGTTAATAAAGTCCACCTGtgcataatttattattttggaAAATTGTAGAGCAGGAAGAGCATTAACTAAAGAAACGGCCAAAAGgctcatggtcactctggaggagccaCAGatatccacagctcaggtggggaaatctgtccacaggatgaCTATTGTTATCTGTTGTGTATTTCACCAGCCAGATCTAGAACTGCATGGTTTAGATTATAACATGTTTATGttacaaaatactgaataagaAGGCCTGAATATAAATGCATGCCACattttcaaaattttatttgtaacaatttttttaaaaacatgtattattttcttttcacttcACAAATACTTGCTACTTCGTGTTGgtgtatgaatgaataaatatgaatatgaatactttttaaaatactgtacataatatGTGAAAGAAAACTACAGAAATCTAAATTATTGTGCCTGGAAGAAAAATGAACTCACATTCAAAGTCACTTAGATCTTCAAGGTCAGCGGGTCCTACTCAGGATTTAGGCTCTGCCCACAAAAGCATGGTAGTGTCTATACCCGTTGTTGTCTGCACTGATCTATTTGGGTGTTTCTTTTAATTAGTGATCTGTCCATAGCAACAGTGTCGCATAATCATTACATACATATTTCATAGCAGGGTCACCCCTGGGTTCCAATAAAATCATAGAGTGCACCTTTAATACACAGAGGTTGAGAAAAAAAGCCTGTAGAATGAGAAAATATAGGATTGCTTCTGTAATGCCTCAAAAACCCCCAGTAGTGGCAGTAGTGAGCTGCTAACTGAGCACCAGTGGCTCACGGACAGACAGTGGCATACTTTCATACTCCTCTGACACGGATTCCgtaacagaaacacagataaagAAGAAGAGCCATATCAACACATCAAGCATGctgaacaacacacacaaacagaccgTTAGCGAGGATGCGTCCTAATTAAAGGAGAATTCCACTGGTATCACTGCTAACTTAAACTTAATTAAATGGTGGAGAAGTAAACAAAGTATTTCAGAGTGGCTGGGGTGTGAAATGGAGCTGTAAGACACTTAAGCTGCAAATACACTTAATTACCAATATACTTCCCGCCATCCGAGACACTGTTAATAATGTTAACAGTACCtcagcaacaagtccaaaagCCATGTTCTGTCCTGGTATGGTGTGATGCAGCATTTATGCAGGAAAGTACATCTagatcttagagcaacatatgctgccttcaatACCACTTCTTGAACACCACATGTTTTTCAGGGACATTCATGCacttttcaacaagacaatgcaaaaccacctgCTGCACGCATTACAAAGGCAGGGCTACAGAGGAAGATGGTACAGGTATTGACCTGGCCTGTCTGCAGTTCTGACTTGTCCCCAGTAAAGAATATGAGGATAATTCTGAAGCTACAAATGCAACATTGAACCTACACCTTAAGACGTAACTTTCTTTGCTTAGTATCGTCACTGACAAAGCCCTTTTTAAGTAGGAATGTCAACATTATGAAGTGGTAAATGCTTAACTATGCCCACTTTTTTGGAAGAAGTTTCAgggctgaaatgcaggaatggatgtacagTAGgttatcttgggttcatactgtctgcaatcaattAAAGACCAACATAAtctgcattttccatactgtcccaattttttttctgatttggggttgtaaatGAAATGGCTATGTTTGTGTTGTAGTCATGGAGATCTGGTAACACTgtgaaaaaataatatgtttgtAAGTTTCTCTACAGTAAACCacaatttcacaccaaacccccactctgactGGCTCTGTTTACTCATCAATCACTAATTAATTACTAATGAAAACATCAGTGGTATTCCCCTTTAAATTAGGAGTAACAATAATTCACCACAACAGCAAGCAGTTTAATGGCGATTCCTTAACACTGCACATTTCGACTTAAGACCACTTCTGTCAGAATTCGAAGGAAGCATTGCCTTATTGCAACCAAAAACTTGGGAAGTTATTGCACTGAAACCAAAATATGATGGCTTTTTAAATCTAATACTTCCCAAAGCTGCCCTGATTTAAAACTCATTTGTGTATGTTTGGTATAATACAATAAACCCTAGAATAAACCATTCTAGATTATGCAGCAGTTCCATTAACCTTCATAAAACAATAGCTAATTGCATTTGAGAGGCGTGTCGCTGCGAAATGAACAAGGTGGTGGAGCGGAACAGATATAAAAAGCCTAGCTGTGAATAAAACCCAGAGATTAAGAAGATTTGAGTGATTCTGAATAAATATTATGGAAACTGTTCTCAAAAAGAAGTTCCTCCACTTGAGAAAACATTTCGGCGCAATTCCCATTGGCGGAACTCGTACAGCGTAGCCGCACGCTAGTCACCAACACTCATCGGCTGCTAATTTAAGGTGGATGACCATTCGGCTGGAGACGGTCCGGTGATAATGAAACAGGCCGGCGGGGAGTGGGCCCTCAGCGGCGGCTCCTTCACTCCTGGAAGCCTGATCCTGGCAGATCGTTGGTCAGTGTGTGCCAGCGCTCCACCTTTGTGCCCTTGTTCTTCAGACAGTCTATCCAGTGTTGGAGGGCGTCGCCCTGCGAATGACAGCCCAGAGACACACCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52366 True 4972 lncRNA 0.39 2 24504831 24510224

Neighbor

gene id symbol gene type direction distance location
LOC111192424 NA coding upstream 102172 24401118 ~ 24402659 (+)
phyhipl phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536 coding upstream 819273 23628687 ~ 23685558 (+)
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 910789 23418853 ~ 23594042 (+)
tfam NA coding upstream 1108453 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 1504208 22998679 ~ 23000623 (+)
LOC111192396 LOC108411010 coding downstream 121479 24631703 ~ 24648610 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 142405 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 186912 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 220676 24730900 ~ 24744132 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding downstream 240827 24751051 ~ 24765736 (+)
G38837 LOC108443171 non-coding upstream 29403 24466389 ~ 24475428 (+)
G38822 NA non-coding upstream 60425 24443634 ~ 24444406 (+)
G38832 NA non-coding upstream 78106 24426446 ~ 24426725 (+)
LOC107197179 NA non-coding upstream 116529 24385736 ~ 24388302 (+)
G38723 NA non-coding upstream 552929 23830486 ~ 23951902 (+)
G38903 NA non-coding downstream 242531 24752755 ~ 24756580 (+)
G38907 NA non-coding downstream 258935 24769159 ~ 24813837 (+)
G38910 atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256 non-coding downstream 277521 24787745 ~ 24795792 (+)
G38909 NA non-coding downstream 295834 24806058 ~ 24807357 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding downstream 325328 24835552 ~ 24839365 (+)
G38817 NA other upstream 530311 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 754638 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 754740 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 754842 23749917 ~ 23749989 (+)
trnar-ccu_24 NA other upstream 754944 23749815 ~ 23749887 (+)
G38870 NA other downstream 106560 24616784 ~ 24617452 (+)
G39179 NA other downstream 864735 25374959 ~ 25375344 (+)

Expression


Co-expression Network