G38910 (atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256)


Basic Information

Item Value
gene id G38910
gene name atp2a1,LOC108411009,LOC107716472,LOC107551849,LOC108247894,LOC108274121,LOC105891595,LOC107653256
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24787745 ~ 24795792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52436
tttcaatcattttaaatgatgacaTCAGTACAGATGCAGATGCAAATCATTCCAAAAGATTCCTTATTTTTGTACgattaacattagcattattgTAGAAGTGTTTCCTGACCCTTATGTTCTGAATCAAAGGGCTAGCTGCAATAGCCATTACTCACAATTAAACACTACTTTAATTGTTTGACCACTTTAAAGTGACTACAACCACAGTGAATGACAGAGAGACGTACTTCCCAAAAGTAAACAGAGgagaaaatatgtatttatttgaaatatgaaaatattttctGGGGAAAAATGGACTAATGCTAAAGTTCACACTAATGCTAATTACTCTGCTTTAATGACAAGAGAAGACGGCATATATGAAAGGAAAAACAAGGAAGAAGAGTGTACAagtttaacaaaaaatgtaactttaatacatttatcaGCTTTAAGAATAAACTTACTTATCATTCAAGCACTAATTTGGAACCATTAAcctatatattaatttaatcttTCCATAAAGAGTTTcggttgtacttttttttattctttcagtcagtttttatagattttttcatgattttcctgtattttgtcctctctctctctttccgctCCGTGGGTGGATTTGTTAGAGCTCGTCTCTGACTCAGTGTGATCCcttgcttcctcctcctcctccttttctcaTCGTTGTCTCCATCGCTCCCCTCTCACTCCACCGGGGCTAGATATCAAACTTTACCTGGCTTGCTTTTGTTACTTGGTAACTGAGGGAGGAAACTGGTTTAGGCTGGAAGTGAATAGGAGAAGTGAAGTTAGTGAAGAGAGGAGATGAAATGGGTCAGAGAGTtaaacatgagagagagagagagagatgaggatGGAGATTACATGGAGATTAGATcacataattattataattaatgattattagAAAACGGATCAATGAAGAGCCCATATCATaaaaatttatttgtttttcttccatTTCTGAATTAGGCATTTATATATAGCGTGTAAACATATGAACATATAGCGTGTATATagaatttaattggaaaaaataCAGCCCATTTTTAAAGAATTGATTTTTATAATGTCCTgtgttttatttccaatttaACTATTAATTGCaatgtacattaatattttaagttttaatgcatttctatTAAATGCTAGTGAACTgtactaattataataaattaaaagtaattatatgtaaagtaaagtaaataatattatcattattattaatcgtgattaactagctagctagcgttatTGTACACTGTAAGATCAAGCATCATATTCATTTGTTAACTGGATGTGTTCTTGTAATCCATATTTTATTTAGGTGAAATCAAAAAGAAGGttcaaaacaaatatattttacctATAATTTGAAGTTgaattattgtgcaaagcaatcaatattgcaaaaaaaaaaaataataaaacagatttcctgaaaccatttaaataaatataatttacacCAGGCTTTCAGTGCAGTAACAAAAACCAGACTGTCACATTTTAAATGGTGAAGGAAAAATGATTTATATGATATGGACCCTTTAAGTGTGAGGGCTTTGATATAAACATGTTCATATAATAAATAGTCTCTTCAATAAATATTagacattatatatacagttagatattatatattagtgacatgttaaacattttaattaatcaattcaTTCCATATGTTAagcatttaatgaaaatatgaATTGTAATCAGCTGCTTGGTCTGCACACGTATCAGTCAGTCTTACCCTCCAGGTAGTTGCGGGCAACGAACTTCAGCACCTCATCAATGAGGATGACGGGGAAGGAGAGTTTGAGCACCACCATCCACTGTTCCACATTCAAGTGAGTCAGCTTGAAGATCATGGCAGGGGGTCCACATAGATGATGAGGAAGTGCAGGGACATGGAGAGGGTCATGGCAGACAACAGCCAGAAATTGCTCCATGGGGGCATGCGGATCAGAGACTGGTTCTCAGACAACTGTTGAGGGCGTTGCACATCTCGATGGTGACCAGCACAGACAGGGCCATGGTCATGGGGGGAGCGGCCTCAAACACCTCACAATCGACTCCGGTGAAGTCCTCGTTCTCAGGACAGCACTGCATGAAGTGAGACTGCACAGCAGGACAGGGGGATCAGTTAATGTAAAACAAGCCTCTCGCTGTAGTGAACAAGGAACTGTGTCCTGTCTGCTGTCAGCAGAAACACAGGGAGGAAGACTCACCAGCTGATAGTAGGTCACACCTGGACCCTCCTCATCATACAGGAACCAGTGAGCAGCAGCACCAACTGTGGCGGCACCGACGTATccGCCAGAGATGAGGGGCTCTTTGGGGGAGCGAGGAGCCTTGCCCATGATGTCCAGATCGGGGGGGTTGAAGCCCAGGGCGGTGGCAGGCAGACCGTCAGTAACCAGGTTCACCCACAGCAGCTGCACGGGGATCAGAGCTTCAGGCAGGCCAAGAGCAGCGGTCAGGAAGGACCTCTCCGACGTTGGAGGAGATGAGGTAGCGGATAAACTGCTTCATGTTGTTGTAGATAGCTCTGCCTTCCTCAACAGCAGCCACAATGGAAGAGAAGTTGTCGTCGGCCAGGACCATCTCAGAGGCTGACTTGGCAACAGCAGTGCCAGAGCCCATGGCAATGCCAATCTCTGCTTTCTTCAAAGCGGGGGCATCATTCACACCATCACCGGTCT
>TU52441
tttcaatcattttaaatgatgacaTCAGTACAGATGCAGATGCAAATCATTCCAAAAGATTCCTTATTTTTGTACgattaacattagcattattgTAGAAGTGTTTCCTGACCCTTATGTTCTGAATCAAAGGGCTAGCTGCAATAGCCATTACTCACAATTAAACACTACTTTAATTGTTTGACCACTTTAAAGTGACTACAACCACAGTGAATGACAGAGAGACGTACTTCCCAAAAGTAAACAGAGgagaaaatatgtatttatttgaaatatgaaaatattttctGGGGAAAAATGGACTAATGCTAAAGTTCACACTAATGCTAATTACTCTGCTTTAATGACAAGAGAAGACGGCATATATGAAAGGAAAAACAAGGAAGAAGAGTGTACAagtttaacaaaaaatgtaactttaatacatttatcaGCTTTAAGAATAAACTTACTTATCATTCAAGCACTAATTTGGAACCATTAAcctatatattaatttaatcttTCCATAAAGAGTTTcggttgtacttttttttattctttcagtcagtttttatagattttttcatgattttcctgtattttgtcctctctctctctttccgctCCGTGGGTGGATTTGTTAGAGCTCGTCTCTGACTCAGTGTGATCCcttgcttcctcctcctcctccttttctcaTCGTTGTCTCCATCGCTCCCCTCTCACTCCACCGGGGCTAGATATCAAACTTTACTTGCTTTTGTTACTTGGTAACTGAGGGAGGAAACTGGTTTAGGCTGGAAGTGAATAGGAGAAGTGAAGTTAGTGAAGAGAGGAGATGAAATGGGTCAGAGAGTtaaacatgagagagagagagagagatgaggatGGAGATTACATGGAGATTAGATcacataattattataattaatgattattagAAAACGGATCAATGAAGAGCCCATATCATaaaaatttatttgtttttcttccatTTCTGAATTAGGCATTTATATATAGCGTGTAAACATATGAACATATAGCGTGTATATagaatttaattggaaaaaataCAGCCCATTTTTAAAGAATTGATTTTTATAATGTCCTgtgttttatttccaatttaACTATTAATTGCaatgtacattaatattttaagttttaatgcatttctatTAAATGCTAGTGAACTgtactaattataataaattaaaagtaattatatgtaaagtaaagtaaataatattatcattattattaatcgtgattaactagctagctagcgttatTGTACACTGTAAGATCAAGCATCATATTCATTTGTTAACTGGATGTGTTCTTGTAATCCATATTTTATTTAGGTGAAATCAAAAAGAAGGttcaaaacaaatatattttacctATAATTTGAAGTTgaattattgtgcaaagcaatcaatattgcaaaaaaaaaaaataataaaacagatttcctgaaaccatttaaataaatataatttacacCAGGCTTTCAGTGCAGTAACAAAAACCAGACTGTCACATTTTAAATGGTGAAGGAAAAATGATTTATATGATATGGACCCTTTAAGTGTGAGGGCTTTGATATAAACATGTTCATATAATAAATAGTCTCTTCAATAAATATTagacattatatatacagttagatattatatattagtgacatgttaaacattttaattaatcaattcaTTCCATATGTTAagcatttaatgaaaatatgaATTGTAATCAGCTGCTTGGTCTGCACACGTATCAGTCAGTCTTACCCTCCAGGTAGTTGCGGGCAACGAACTTCAGCACCTCATCAATGAGGATGACGGGGAAGGAGAGTTTGAGCACCACCATCCACTGTTCCACATTCAAGTGAGTCAGCTTGAAGATCATGGCAGGGGGTCCACATAGATGATGAGGAAGTGCAGGGACATGGAGAGGGTCATGGCAGACAACAGCCAGAAATTGCTCCATGGGGGCATGCGGATCAGAGACTGGTTCTCAGACAAGCTGAGGGCGTTGCACATCTCGATGGTGACCAGCACAGACAGGGCCATGGTCATGGGGGGAGCGGCCTCAAACACCTCACAATCGACTCCGGTGAAGTCCTCGTTCTCAGGACAGCACTGCATGAAGTGAGACTGCACAGCAGGACAGGGGGATCAGTTAATGTAAAACAAGCCTCTCGCTGTAGTGAACAAGGAACTGTGTCCTGTCTGCTGTCAGCAGAAACACAGGGAGGAAGACTCACCAGCTGATAGTAGGTCACACCTGGACCCTCCTCATCATACAGGAACCAGTGAGCAGCAGCACCAACTGTGGCGGCACCGACGTATccGCCAGAGATGAGGGGCTCTTTGGGGGAGCGAGGAGCCTTGCCCATGATGTCCAGATCGGGGGGGTTGAAGCCCAGGGCGGTGGCAGGCAGACCGTCAGTAACCAGGTTCACCCACAGCAGCTGCACGGGGATCAGAGCTTCAGGCAGGCCAAGAGCAGCGGTCAGGAAGGACCTCTCCGACGTTGGAGGAGATGAGGTAGCGGATAAACTGCTTCATGTTGTTGTAGATAGCTCTGCCTTCCTCAACAGCAGCCACAATGGAAGAGAAGTTGTCGTCGGCCAGGACCATCTCAGAGGCTGACTTGGCAACAGCAGTGCCAGAGCCCATGGCAATGCCAATCTCTGCTTTCTTCAAAGCGGGGGCATCATTCACACCATCACCGGTCT
>TU52442
tttcaatcattttaaatgatgacaTCAGTACAGATGCAGATGCAAATCATTCCAAAAGATTCCTTATTTTTGTACgattaacattagcattattgTAGAAGTGTTTCCTGACCCTTATGTTCTGAATCAAAGGGCTAGCTGCAATAGCCATTACTCACAATTAAACACTACTTTAATTGTTTGACCACTTTAAAGTGACTACAACCACAGTGAATGACAGAGAGACGTACTTCCCAAAAGTAAACAGAGgagaaaatatgtatttatttgaaatatgaaaatattttctGGGGAAAAATGGACTAATGCTAAAGTTCACACTAATGCTAATTACTCTGCTTTAATGACAAGAGAAGACGGCATATATGAAAGGAAAAACAAGGAAGAAGAGTGTACAagtttaacaaaaaatgtaactttaatacatttatcaGCTTTAAGAATAAACTTACTTATCATTCAAGCACTAATTTGGAACCATTAAcctatatattaatttaatcttTCCATAAAGAGTTTcggttgtacttttttttattctttcagtcagtttttatagattttttcatgattttcctgtattttgtcctctctctctctttccgctCCGTGGGTGGATTTGTTAGAGCTCGTCTCTGACTCAGTGTGATCCcttgcttcctcctcctcctccttttctcaTCGTTGTCTCCATCGCTCCCCTCTCACTCCACCGGGGCTAGATATCAAACTTTACCTGGCTTGCTTTTGTTACTTGGTAACTGAGGGAGGAAACTGGTTTAGGCTGGAAGTGAATAGGAGAAGTGAAGTTAGTGAAGAGAGGAGATGAAATGGGTCAGAGAGTtaaacatgagagagagagagagagatgaggatGGAGATTACATGGAGATTAGATcacataattattataattaatgattattagAAAACGGATCAATGAAGAGCCCATATCATaaaaatttatttgtttttcttccatTTCTGAATTAGGCATTTATATATAGCGTGTAAACATATGAACATATAGCGTGTATATagaatttaattggaaaaaataCAGCCCATTTTTAAAGAATTGATTTTTATAATGTCCTgtgttttatttccaatttaACTATTAATTGCaatgtacattaatattttaagttttaatgcatttctatTAAATGCTAGTGAACTgtactaattataataaattaaaagtaattatatgtaaagtaaagtaaataatattatcattattattaatcgtgattaactagctagctagcgttatTGTACACTGTAAGATCAAGCATCATATTCATTTGTTAACTGGATGTGTTCTTGTAATCCATATTTTATTTAGGTGAAATCAAAAAGAAGGttcaaaacaaatatattttacctATAATTTGAAGTTgaattattgtgcaaagcaatcaatattgcaaaaaaaaaaaataataaaacagatttcctgaaaccatttaaataaatataatttacacCAGGCTTTCAGTGCAGTAACAAAAACCAGACTGTCACATTTTAAATGGTGAAGGAAAAATGATTTATATGATATGGACCCTTTAAGTGTGAGGGCTTTGATATAAACATGTTCATATAATAAATAGTCTCTTCAATAAATATTagacattatatatacagttagatattatatattagtgacatgttaaacattttaattaatcaattcaTTCCATATGTTAagcatttaatgaaaatatgaATTGTAATCAGCTGCTTGGTCTGCACACGTATCAGTCAGTCTTACCCTCCAGGTAGTTGCGGGCAACGAACTTCAGCACCTCATCAATGAGGATGACGGGGAAGGAGAGTTTGAGCACCACCATCCACTGTTCCACATTCAAGTGAGTCAGCTTGAAGATCATGGCAGGGGGTCCACATAGATGATGAGGAAGTGCAGGGACATGGAGAGGGTCATGGCAGACAACAGCCAGAAATTGCTCCATGGGGGCATGCGGATCAGAGACTGGTTCTCAGACAAGCTGTGAGGGCGTTGCACATCTCGATGGTGACCAGCACAGACAGGGCCATGGTCATGGGGGGAGCGGCCTCAAACACCTCACAATCGACTCCGGTGAAGTCCTCGTTCTCAGGACAGCACTGCATGAAGTGAGACTGCACAGCAGGACAGGGGGATCAGTTAATGTAAAACAAGCCTCTCGCTGTAGTGAACAAGGAACTGTGTCCTGTCTGCTGTCAGCAGAAACACAGGGAGGAAGACTCACCAGCTGATAGTAGGTCACACCTGGACCCTCCTCATCATACAGGAACCAGTGAGCAGCAGCACCAACTGCCAAGTATCTGAAGAACAGCCAGCCAGAGATGAGGGGCTCTTTGGGGGAGCGAGGAGCCTTGCCCATGATGTCCAGATCGGGGGGGTTGAAGCCCAGGGCGGTGGCAGGCAGACCGTCAGTAACCAGGTTCACCCACAGCAGCTGCACGGGGATCAGAGCTTCAGGCAGGCCAAGAGCAGCGGTCAGGAAGGACCTCTCCGACGTTGGAGGAGATGAGGTAGCGGATAAACTGCTTCATGTTGTTGTAGATAGCTCTGCCTTCCTCAACAGCAGCCACAATGGAAGAGAAGTTGTCGTCGGCCAGGACCATCTCAGAGGCTGACTTGGCAACAGCAGTGCCAGAGCCCATGGCAATGCCAATCTCTGCTTTCTTCAAAGCGGGGGCATCATTCACACCATCACCGGTCT

Function

symbol description
atp2a1 Predicted to enable ATP binding activity; P-type calcium transporter activity; and calcium ion binding activity. Acts upstream of or within several processes, including cellular calcium ion homeostasis; negative regulation of muscle contraction; and relaxation of skeletal muscle. Predicted to be located in several cellular components, including endoplasmic reticulum; endoplasmic reticulum-Golgi intermediate compartment; and sarcomere. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; gill; mesoderm; musculature system; and pectoral fin. Used to study Brody myopathy. Human ortholog(s) of this gene implicated in Brody myopathy. Orthologous to human ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1).

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52436 False 2732 lncRNA 0.39 6 24787745 24795792
TU52441 False 2725 lncRNA 0.39 6 24787745 24795792
TU52442 True 2735 lncRNA 0.39 6 24787745 24795792

Neighbor

gene id symbol gene type direction distance location
LOC103035674 LOC108411004 coding upstream 1035 24773731 ~ 24786710 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding upstream 22009 24751051 ~ 24765736 (+)
LOC103035992 NA coding upstream 43613 24730900 ~ 24744132 (+)
mto1 mto1 coding upstream 73932 24697136 ~ 24713813 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding upstream 124165 24652629 ~ 24663580 (+)
pelo pelo,LOC107653258 coding downstream 52344 24848136 ~ 24865954 (+)
pkmyt1 pkmyt1 coding downstream 199694 24995486 ~ 25008027 (+)
LOC103031867 NA coding downstream 220544 25016336 ~ 25020657 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding downstream 226399 25022191 ~ 25025894 (+)
LOC103022724 NA coding downstream 498461 25294253 ~ 25333929 (+)
G38903 NA non-coding upstream 31165 24752755 ~ 24756580 (+)
G38833 NA non-coding upstream 272754 24458281 ~ 24514991 (+)
G38851 NA non-coding upstream 277521 24504831 ~ 24510224 (+)
G38837 LOC108443171 non-coding upstream 312317 24466389 ~ 24475428 (+)
G38822 NA non-coding upstream 343339 24443634 ~ 24444406 (+)
G38909 NA non-coding downstream 10266 24806058 ~ 24807357 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding downstream 39760 24835552 ~ 24839365 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding downstream 150188 24945980 ~ 24992978 (+)
G38946 NA non-coding downstream 152993 24948785 ~ 24952976 (+)
G38947 tgfb1i1 non-coding downstream 163441 24959233 ~ 24962185 (+)
G38870 NA other upstream 170293 24616784 ~ 24617452 (+)
G38817 NA other upstream 813225 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1037552 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1037654 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1037756 23749917 ~ 23749989 (+)
G39179 NA other downstream 579167 25374959 ~ 25375344 (+)

Expression


Co-expression Network