G39185


Basic Information

Item Value
gene id G39185
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 25413651 ~ 25413994 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU52802
gctcacgctcacacctcgccgagtatctgtttggtaattcctacaatacaaagcgtttctcttgcccttgcctttatccgtgtatgatcttgtttttgtttttctaccGACGTTGATTTTTGCCtactcccttgtgttggatatCCGTGTATGACCAGGACTGTTTCTActactttggatttttgcctaccctgtgatactgcctacctgtgtatgaactctggactgtcttccgtttatggtatggtttctctacactgtgtattactggtactgaccctgtttccgttgactacccctgtctgctctataacttttaataaagttattttattgtatctgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52802 True 344 lncRNA 0.42 1 25413651 25413994

Neighbor

gene id symbol gene type direction distance location
LOC103022410 NA coding upstream 48768 25359459 ~ 25364883 (+)
LOC103022724 NA coding upstream 79722 25294253 ~ 25333929 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding upstream 387757 25022191 ~ 25025894 (+)
LOC103031867 NA coding upstream 392994 25016336 ~ 25020657 (+)
pkmyt1 pkmyt1 coding upstream 405624 24995486 ~ 25008027 (+)
LOC111192426 NA coding downstream 7331 25421325 ~ 25433217 (+)
LOC103024180 tlk2,LOC108431425 coding downstream 22461 25436455 ~ 25461136 (+)
brca1 NA coding downstream 64542 25478536 ~ 25534478 (+)
G39177 NA non-coding upstream 44336 25368779 ~ 25369315 (+)
G39123 NA non-coding upstream 195345 25218047 ~ 25218306 (+)
G39119 NA non-coding upstream 204655 25208497 ~ 25208996 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding upstream 420673 24945980 ~ 24992978 (+)
G39191 NA non-coding downstream 48772 25462766 ~ 25465369 (+)
G39204 NA non-coding downstream 127791 25541785 ~ 25545529 (+)
G39205 NA non-coding downstream 132120 25546114 ~ 25546488 (+)
G39211 rnd2,LOC108273785,LOC105030587,LOC106579157 non-coding downstream 162564 25576558 ~ 25631978 (+)
G39215 NA non-coding downstream 182574 25596568 ~ 25597951 (+)
G39179 NA other upstream 38307 25374959 ~ 25375344 (+)
G38870 NA other upstream 796199 24616784 ~ 24617452 (+)
G38817 NA other upstream 1439131 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1663458 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1663560 23750019 ~ 23750091 (+)

Expression


Co-expression Network