G52328


Basic Information

Item Value
gene id G52328
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2399814 ~ 2400894 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59610
AGCGCTTACGGGTGTGGAACAACATGAGGGTGAGTAATTAGTGACAGAAATTTCATTTTTTGGGTGAACTAACCCTTTAAGTCAAACTTTTTTCTGGTTACCTCTAGCTGCTGAATTGTCAATCCATCCATTATTTTTCCCCCTTATCCCTCCACCCGTCCACAGAAGGTCTTTGTGGGACATTAGTGTGATGGTTCTCTGCTTTTGTTGATATCTGAAATGTTTAGCATGTAAATTCCATATTTAAGGATAATGTTAGGCAGAGTTATTGTCAAGAATACAGCACAAAAATAATTTGTGCTCACATCCCTGAAACACTCTAATGTCTGTGTGGGTGAGAAAGAAGAAGAAGGAAGATAAAGAGCAAGAGGTTGAAGGATAAAACGGTACATATATGTTAGTGTTCAGTTATCTCTATGGAGACAGTGGATATTACACACAGTTTCTAAGTTAGAAATCAAATAGGCCTATACAAGTTATGTGTGTGTCATAAGATACCAATGCACAAGAAACGCCCATTGTTTTGAGGATGTAATTATATGCCTGATGTGGTGCAGATAGCATGTTTTTCTTTTTATACATACTTATATACAAGTGTTTATGATTTTGAATTTTTGAAAAATCAGGAGCTCAATGATTGTGGTAGCTTGTTATTGGAAAGTGTTTGTTTGATGAATATACATTGCACAATTTTTAAGTTGATTTTTTTTTTTTTTTTTTTTGTGTGTAATTGATTTCCTCTTTATTTTACTCTGTCCATTTGTTTGAATGAAGCGCTGATGTTGACAAGGACTTCTGCGGCTTGTTATCTATGCAAACTGGTTTCTGTGTTTCTGAGTAAGTGAAGATGGTTAAACTTTTGGGGACAAACACAAACTAAATTTGCAATCTGGAACCCCACTTCAATCATTTACTTATCCCTTATCTATTCAATAATCTACTGGACTGTATGGAAACTCATGCAAAATAATGAATGTTGTCAAAATATTTTTCTATATTTAAAATGGAGGAGGAAAGTGGAACTGAATGGAGATTTAAATCAACGATACAAACCTTCAAAGACCACCAAACACTAAAAGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU59610 True 1081 lncRNA 0.35 1 2399814 2400894

Neighbor

gene id symbol gene type direction distance location
CI01000009_02391182_02393863 NA coding downstream 5951 2390445 ~ 2393863 (-)
CI01000009_02358636_02361913 HPX coding downstream 37865 2358470 ~ 2361949 (-)
CI01000009_02352214_02356619 NA coding downstream 42973 2352214 ~ 2356841 (-)
CI01000009_02327693_02335035 NA coding downstream 64779 2327693 ~ 2335035 (-)
CI01000009_02300395_02301213 OLIG2 coding downstream 98177 2300109 ~ 2301637 (-)
CI01000009_02403219_02417215 FAM160A2 coding upstream 2262 2403156 ~ 2417215 (-)
CI01000009_02591882_02593586 RPL8.S, RPL8 coding upstream 190969 2591863 ~ 2593761 (-)
CI01000009_02610459_02610721 NA coding upstream 209366 2610260 ~ 2610721 (-)
CI01000009_02654102_02655554 CASK coding upstream 253208 2654102 ~ 2656438 (-)
CI01000009_02682050_02707583 NA coding upstream 280714 2681608 ~ 2707623 (-)
G52371 NA non-coding downstream 11275 2388314 ~ 2388539 (-)
G52342 NA non-coding downstream 184279 2214952 ~ 2215535 (-)
G52338 NA non-coding downstream 242068 2157412 ~ 2157746 (-)
G52230 NA non-coding downstream 303762 2094368 ~ 2096052 (-)
G52222 NA non-coding downstream 407828 1990621 ~ 1991986 (-)
G52330 NA non-coding upstream 141 2401035 ~ 2401380 (-)
G52378 NA non-coding upstream 26355 2427249 ~ 2427848 (-)
G52379 NA non-coding upstream 47472 2448366 ~ 2451640 (-)
G52440 NA non-coding upstream 112063 2512957 ~ 2513671 (-)
G52409 NA non-coding upstream 162868 2563762 ~ 2566564 (-)
G52098 NA other downstream 992187 1401932 ~ 1407627 (-)
G52410 NA other upstream 150830 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 482794 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 860309 3261038 ~ 3262843 (-)
G52828 NA other upstream 1816526 4217420 ~ 4231469 (-)
G53515 NA other upstream 3101501 5502395 ~ 5505248 (-)

Expression


Co-expression Network