med9 (med9,LOC108412951)


Basic Information

Item Value
gene id med9
gene name med9,LOC108412951
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20862649 ~ 20865785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232853.2
aatacatgTGTTTAATACGTgaaaaatgcaaatgcaaacaaagacaaaaagaaacgTCACACGCCGAGGCACGCGAGCCTTGCAGTGATTAATAGctgatattattaataataataatctgattaATAGTCAGATTGGTCTGTGTTGCTGATGTCAGAGGACTGTGATGTCAGAGGACAGTCAGCTGAAGATGGCGAGCGCTGTGGCTGTGGTGGAGGAGACGGAGGATTACTCCTTTTTACCTCTAATTCACGATATTATCAAATGCATGGACAAAGAGAACCAGGATGTTCACCAGGAGTTAAACAGACTGAGAGCACGGATTCAGGAGGCACGGGAGCAGATTTCAGCTATGCCTGGCATTGATGCGAGTCCATCAGCACAGCAGCAGCGTCTGCAAACGCTTAGGGATCAGGTTCGTACCAAGAACCAGCTCTTACACAAGTACAAGGGCCTGTGTATGTTTGACATCCCCAAGCCTTCCTGAGGAAGAGGATCAGAGGATTCTACAGAGTAAATAAGGACAGATGGATTATTTATTGACAGACAAACTCATCTGAAAAAGAACTGTTCCACACAAGGGACTGTGCTTTTCCCCATCATTCGTGTGACTTTACTGATTTTGACTGTGCTTTAGTTGctgttagattattttttatttttatttttatttttactgctgaaaatgtcaaagCTGTGTCTAATAAACCAAACATATTTTCTAAGAACATA

Function

symbol description
med9 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex.

NR:

description
dexamethasone-induced Ras-related protein 1-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15149 MED9; mediator of RNA polymerase II transcription subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232853.2 True 732 mRNA 0.41 2 20862649 20865785

Neighbor

gene id symbol gene type direction distance location
nt5m nt5m,LOC107719901 coding upstream 51507 20800120 ~ 20811142 (+)
tnfrsf13b NA coding upstream 128978 20725051 ~ 20733671 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding upstream 153792 20702260 ~ 20708857 (+)
LOC103030679 LOC108437319 coding upstream 170923 20689666 ~ 20691726 (+)
LOC103045523 LOC108437318 coding upstream 563088 20294239 ~ 20299561 (+)
LOC103033426 NA coding downstream 125196 20990981 ~ 20996657 (+)
emc9 emc9,LOC106579550,LOC106590414 coding downstream 132330 20998115 ~ 21002011 (+)
cep55 NA coding downstream 166117 21031902 ~ 21043890 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding downstream 189783 21055568 ~ 21077901 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 276801 21142586 ~ 21144194 (+)
G38010 cops3 non-coding upstream 72523 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 317012 20445849 ~ 20545637 (+)
G37974 NA non-coding upstream 351463 20509679 ~ 20511186 (+)
G37969 NA non-coding upstream 445469 20416873 ~ 20417180 (+)
G37952 NA non-coding upstream 670963 20191412 ~ 20191686 (+)
G38059 NA non-coding downstream 9011 20874796 ~ 20875276 (+)
G38062 NA non-coding downstream 37292 20903077 ~ 20981763 (+)
G38081 rbp4 non-coding downstream 178727 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 265845 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 406347 21272132 ~ 21272572 (+)
G37943 NA other upstream 704310 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1351208 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1377734 19481056 ~ 19484915 (+)
G37749 NA other upstream 1530988 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 2154921 18645635 ~ 18707728 (+)
G38079 kif22,LOC107664627 other downstream 153384 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 243295 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 300783 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2881684 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2881786 23747571 ~ 23747643 (+)

Expression


Co-expression Network