rasd1 (rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420)


Basic Information

Item Value
gene id rasd1
gene name rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20866800 ~ 20869080 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232854.3
TCAACCTtgttgtttctattaaagtggccagtgatatagccataaaagctttaaaaactcTTCAGAAATATGCATAGGTGTTTTAAATGAATGGGTAGATGATTATTTTTGTTGCTGTTGATGAGCCTGTTTTGATCAGACTGACTCATGTGTGCCCTCTTGTGGTGTAAACATGTGTTAATGCACAGCTTGTGCACAGTAGTGAACACACCTAGCCACTCAGTCTCTCACTCTCCACAAAAAGAGCACTACCAGTATCAGTGTACAGGGTCTGGAAATGGCATGAATTAGGCATTATTCGTGCCGTCTTAAATGATGCAACAGTTACATTGTGGCATCTTAGGTGCGACACCATTTAAGGATGTACGTAGAGACTGAATGAGAATCCAAACTTAAGCACAATATATCAGACATAAGACATAACAATAACACTATAATTAGCCACTAGAGTTGATTTAGACACTTTAGTCACCATGCCAACACGTTTTCTTGCAAAAAGAAAAGTATTCTATGCTGCACCGCAGAGTAAACACGTCTCTCTGCTCGCTCTCGCCAAGCCCCAGCAGAGAGCTGGAATGACGCACAAAGAGCTTTTTCAGCCTTGCAGTGAGCGAGCGAGGGCTGGGTGGGCTGCAAGTTGCACAGGCCCGCCCCCTTCCAGCTCCACACGCTGCTTCTCATGCCTCTGAGCTGTGGAAGGAGGGGCACCAGGACCGGTATAAAACAACCATCCTCGCCTCTCACAGACTCAGAAATCAGAGAGCTCAGCAGACAAACACAGCTCCTTCCCTGTTGCTCTAGAACTCAGAGGAACAACGTTAACGTCGTGAAAGTATAAGGCACCATGATTAAGAAAATGTCGCCCTCAGAGAACGACTTCGACATCCCAGCCAAGAACTGCTACAGGATGGTGATCCTGGGCTCCACCAAAGTCGGGAAGTCTGCGATCGTGTCCCGGTTCCTCAACGGCAGGTTCGAGGAGCAGTACACACCGACAATCGAGGACTTTCACAGGAAGCTCTATAGTATTAGGGGAGATGTATACCAGCTGGACATTCTAGACACTTCGGGAAACCATCCGTTCCCTGCGATGAGGAGACTGTCCATACTCACAGGTGACGTCTTCCTCCTTGTGTTCAGCCTGGACAACAGAGAGTCCTTTCGGGAAGTGCAACGTCTCAAGCAACAGATCTTCGAGACCAAGTCGTGCCTAAAAAACAAGACCAAGGAGAATGTGGACGTGCCACTGGTCATCTGCGGCAACAAGGGTGACCGAGAGTTCTCCAGAGAGGTGCAGCGAGAGGAGATCGAGCAGCTGGTGGCCGGCGATGAGCAGTGCGCCTACTTTGAGATCTCGGCCAAGCGCAACACCAACGTGGACCGCATGTTCCAGACTCTCTTCACAATGGCCAAGCTGCCCAATGAGATGAGCCCAGACCTGCATCGTAAGGTGTCATTGCAGTACTGCGACGTGCTGCATCGCAAGTCATTCCGCAGCAAGAAGCCAAAGGATGGTGACGCATACGGGATCGTGGCACCATTTGCACGCCGCCCCAGTGTGCACAGTGACCTGATGTACATAAAAGAAAAGGCCATAGGTGGCAGCCAAGGCAAGGACAAGGAAAGATGTGTGATCAGCTAAAGACTGTCCTGCTGAAACTGCCACAAAACACGGCACAACAGGGTTGAGCTGCAGGCTGACAGACGCGCACACTGTTGCCATATTTACAGGTGGCGACGTCAGTGTAGCGCATGCGCACCGGGCGGAGACGTAGCCCACGCTGCGATGCAATGGACACGTTACTGTGCGTGAGATGTGTACATACCCAGAATGTGACTTTGCCGCGCTCAGTTAGAGCGCTCTGTAATGTGGCTTTCGTTTGTTGTGAGATTCGGCTAAACAAGCCGTTGAAAAGTCTGCTTCGGTACGTCTGCCTTTAAACAGATCTGGCTCACGAGACTCACGCAGCACAGTGAACTGCCATGTTCAGAACAGCCTACTGtttacattttgttattttataacaAATAACTGAACTTGAATGTTTGTTGCTTTTGGAACAAATTTTacaatgaatgtatttattcttCTGTCTCTGTACACTTTTGCAATGaggaaaatatgaaataaatgaatttattgaATA

Function

symbol description
rasd1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to several human genes including RASD1 (ras related dexamethasone induced 1).

NR:

description
dexamethasone-induced Ras-related protein 1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07843 RASD1; RAS, dexamethasone-induced Ras-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232854.3 True 2147 mRNA 0.48 2 20866800 20869080

Neighbor

gene id symbol gene type direction distance location
cops3 cops3 coding downstream 68853 20783929 ~ 20797947 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 85471 20735303 ~ 20781329 (-)
LOC111192421 NA coding downstream 1008174 19851884 ~ 19858626 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding downstream 1050619 19802002 ~ 19816181 (-)
LOC103041296 LOC108437306,LOC108274024 coding downstream 1086305 19741133 ~ 19780495 (-)
pemt pemt,LOC107719881 coding upstream 7354 20876434 ~ 20968546 (-)
lmf1 lmf1,LOC107580192 coding upstream 112325 20981405 ~ 20990118 (-)
LOC103035258 NA coding upstream 134520 21003600 ~ 21018253 (-)
kif22 kif22,LOC107664627,LOC107654032 coding upstream 150041 21019121 ~ 21030167 (-)
rbp4 rbp4 coding upstream 175421 21044501 ~ 21048013 (-)
G38179 med9,LOC108412951 non-coding downstream 1079 20862801 ~ 20865721 (-)
G38052 nt5m,LOC107719901 non-coding downstream 55658 20804055 ~ 20811142 (-)
G38048 NA non-coding downstream 99461 20767034 ~ 20767339 (-)
G38032 NA non-coding downstream 254198 20612275 ~ 20612602 (-)
LOC111192388 NA non-coding downstream 317582 20546125 ~ 20549218 (-)
G38180 NA non-coding upstream 938 20870018 ~ 20870550 (-)
G38181 NA non-coding upstream 2455 20871535 ~ 20871832 (-)
G38183 NA non-coding upstream 4252 20873332 ~ 20873636 (-)
G38175 NA non-coding upstream 5585 20874665 ~ 20875517 (-)
G38200 NA non-coding upstream 129017 20998097 ~ 20999626 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 187369 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1041148 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1265516 19544225 ~ 19601284 (-)
G37616 NA other downstream 2231702 18633578 ~ 18635098 (-)
G37603 NA other downstream 2293624 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 1004240 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 1144425 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2511565 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2596139 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2814046 23683126 ~ 23720782 (-)

Expression


Co-expression Network