LOC103033426


Basic Information

Item Value
gene id LOC103033426
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20990981 ~ 20996657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232858.3
ataatttaaatataatagagagtacagtacagtacagtacagtacagtacagaacagtTGTGCAGTGTCTGTGGGGGGAAGGCCGTCAGCAGGGGGAGCCGTTCTGCACCTTTTCTCTCCTCAGAAGAAGAGCTCTAACAACTTCCGTGTGTGAAGCGCGCGGCTGGCAAAAGCAAACAACTTTACCCTTAGAGTTTAACAATGATCTTTACCTGCTAATTCCACTATGGATAACAGCCCAGGATTGCCACCTGGTGACGACCACAATGTAGAAATTCAGGGCTCTGTCACTGTCTGCAGCATAGAAGTGGAGACTGAGAGCCAGGAGGAAACTGCTTTTAGCGATGAACAATTCTATTGTGAGAGCTGCCATAAACCGTATGTGGATCAATGTGAGGTCCACGGTCCACCAGTGTTCACCAGTGATTCCTACACACTCACAGGAATCCCTCAGAGGGCTCTCCTCACTCTGCCCCAAGGTCTGGTCATCGGCAGATCAACGTCTCCTGGAGCAGGGCTAGGGGTTTTTAACCAGGGCCAGGCTCTTCCTGCTGGAATGCATTTCGGTCCTTTGGACGGAGAGCAGACCACCAAGGAAAAAGCTCTGGAGAGTGCATTCTCTTGGGTGATCTGCCGAGGAGGTGATCAGTATGACTACATTGATGTAGAGAGGGACACGCATTCAAATTGGATGAGGTATGTCGTCTGCTCGCATAGTGAGAAAGAACAGAATTTAGTGGCGTTTCAGCAGAACGGGCGCATTCTGTTCCGCTGCTGCCGACCCATACCTCCTGGGCAGGAGCTGAAAGTGTGGTACGCGGAGGATTACGCCAAAAGCCTCGGGATCACCTGGGATAAAATCTGGGACAGGAAGTGCACACCTCTAGGAAGAACTGATGAAGAGGCACAGGTCTTCCTCTGTCCTTACTGCCAGTACTCTTTTCCCGCTGCTTTTTATCTGCACAGACATATCAGACGCTCACATCCAGAAGAATCCTCACATTTTTCAGAAACTCAGGTTCTGGAGACAACAGTCTTGAACCTGGATCAGTGTCTGCTTGCCTCTGATGCACCACCATCTTCTTCCCATTCACAGACAATTGCAGAATCTTTCCAGAGCCATTCTCCAACCCTCGATGGTCAGACAGAGAAATCCACTGCAGCTGAACTGTTCCATGAACACAACAGTAATTTGAGTGACTCTACAGAGCAGACTGACAGTGGTGCAACAGAGCAGAACAAATGTGTGGAGTGCAGCAGAACATTTTTGAGGTCATACCATTTAAAAAGACACCAGCGCACAATCCACTCCAAGGAGAGGCCATATTGCTGTAGCCACTGCGGGAGGTGTTTTAGTCAGGCTACAGGGTTGAAAAGACACCAGCAGACCCACCAGGGTAAAAAGAACTTGGGAACAGACTCTcaacctgcagagaaagagggTGTGCCAATGGCAATCTATCCTTGTACTGAGTGTTCGTTCTCTTTCGTGGCAAAGCTCAATCTTTACAAACATCTCAAACGGCACCACCATGAACAGTACCTCAAAGTAGTAGAGAATCGCTCTATTAACGCAGAAACGCCAGTGCAGGTTGAAGAAATCATAGACAAAAATGACCCACCGTACGAACCACCAACCAGGAATAGAAAATCTGCTCTGAGCCCAAACAAGCGCAAGGGTCTTCTGAAAAAGGGACCTTCTGGTCGACCTCGAGGCCGACCACCTAAAAACAAAACTACTCCAAAGCCTGTTCGGAACAAAGCTCAGGAGCAGAATCAAAACATGTCGATCACATCTGAACAGGCTACCGCAGATTTGGAGGGATCAGCAGAGTCGCAGAAAGCCCAGGAGGTCCAGGAGCTGCCCACATCTTCCCACATATGTGGTGAGTGCCTGAGAACCTTCAGCCACTTGCATCTTCTGAAAAGCCATGAATGCATTCAGCAGGGCGATGGCCCCCATGGCTGCTCTCTCTGCGACCTCTACTTCAACCGCCTCTGCAACCTGCGGCGCCATGAGCGCAACATTCATGCCAAAGAGAAGCCGTACTGCTGCACGCTGTGCCTCAAGTCCTTCACCCAGTTGTCCGGTCTAAAACGTCACCAGGAGAGCCACTCGCGCCTCAGCGCCCAGCGGCAAACTGCGACGCTGGCTGACGCCACCATCCACGCCTGCAGCCACTGCCCCTTCTCCTTCACTGGCGAGCGCTACCTGCACAAGCACATCCGGCGCCACCACCCAGAGATGACCACCAAATACATCAGTCTCAGCGAGAGCACTGTGTCCTCCAAGGAGCACAGTTGCTCGCAGTGCTCCAAGACCTTTCGAACAATTCGAGGTTTTAAGAACCACGCCTGCTTTAGGCAGGGGGACCAGCTGTACCTGTGTCCTGACTGTGGCAAAGCTTTCGGCTGGTACAACAGCCTGAAGCAGCACCAGCGCATCCACACAGGGGTGAAACCATACGCCTGCACCCAGTGCCAAAAGAGCTTTGTGCATGCCGGTCAGCTAAACGttcacatgcgcacacacacggGCGAGAAGCCGTTCCTCTGCGCTGAGTGCGGAGAGAGCTTCAGGCAATCGGGCGACTTGAGGCGGCACGAGCAGAAGCATTCAGGGGTGCGGCCGTGTCAGTGCCccgactgtgggaagagcttcAGCCGGCCACAGAGCCTCCGGGCACACCAGCAACTCCACAAGGGCACCAAGCTCTTCCCCTGCACACAATGTGGGAAAAGCTTTGCCCGCAGGTACCACCTGACCCGCCATCACCAGAAAATGCACTCCTGACAAACCTGTGACTGTTCCAGAGGATACACTCGATGCCTGTAAAAGCCagctgtactgttttttttggagCTGCTACGCAGACACTGTTACACAATTCTGATGTCGAGCTTTGTTGGTGCTGCTTATGGGCAGGAGTCAAGAGTTCCATGTATAACACAGATGCATCCATTTCATCTGCTCTatattattgtttaatgttaCTTTCTTAGGACTTTAGACACTTGGTTCATGTTGGTGGAAAAAAGGTAATGAGAATGGAAGGACATTTATCGGTAGAACCTAAATACATCCCTGTTGTTTTCAGAAACAAATgcaatgtttaatttcatccacaataaattaaattaaatgtg

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0043229 intracellular organelle cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232858.3 True 3147 mRNA 0.51 6 20990981 20996657

Neighbor

gene id symbol gene type direction distance location
med9 med9,LOC108412951 coding upstream 125196 20862649 ~ 20865785 (+)
nt5m nt5m,LOC107719901 coding upstream 179839 20800120 ~ 20811142 (+)
tnfrsf13b NA coding upstream 257310 20725051 ~ 20733671 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding upstream 282124 20702260 ~ 20708857 (+)
LOC103030679 LOC108437319 coding upstream 299255 20689666 ~ 20691726 (+)
emc9 emc9,LOC106579550,LOC106590414 coding downstream 1458 20998115 ~ 21002011 (+)
cep55 NA coding downstream 35245 21031902 ~ 21043890 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding downstream 58911 21055568 ~ 21077901 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 145929 21142586 ~ 21144194 (+)
LOC103044640 NA coding downstream 355534 21352191 ~ 21352892 (+)
G38062 NA non-coding upstream 9218 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 115705 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 200855 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 445344 20445849 ~ 20545637 (+)
G37974 NA non-coding upstream 479795 20509679 ~ 20511186 (+)
G38081 rbp4 non-coding downstream 47855 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 134973 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 275475 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 320446 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 325182 21321839 ~ 21322611 (+)
G37943 NA other upstream 832642 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1479540 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1506066 19481056 ~ 19484915 (+)
G37749 NA other upstream 1659320 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 2283253 18645635 ~ 18707728 (+)
G38079 kif22,LOC107664627 other downstream 22512 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 112423 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 169911 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2750812 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2750914 23747571 ~ 23747643 (+)

Expression


Co-expression Network