emc9 (emc9,LOC106579550,LOC106590414)


Basic Information

Item Value
gene id emc9
gene name emc9,LOC106579550,LOC106590414
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20998115 ~ 21002011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232859.3
TTGTGGTGTGCAGGCAGTGGGGGGCGCTAAGCTCCTCTGGTCTGTGGTCTGCGGTAAATCcacaggaggagaagaagaacgcAGTCAGGTTTCTTTGTGTTCTTTAGGTTTAGTGGATATTTCTGATCGATTTTCCACGTTCTCTGATTATTTCTCGTCCTTTTTCCCCATCTATAATTGTTTATATAAACAGCAGCGGAAGTGAAAATGAGTGAAGTGGAGCTGTCATGTTTGGCTTATGTGAAAATGTTCCTGCACGCCAGCCTGTTTCCCCACTGCAGTGTGAACGGGCTGCTGTTATCCTCCAGTTCATCTGAGGGCCCTGTGTGTGTTACAGACTGTGTTCCTCTACTTCACTCCCATTTATCGCTGGCTCTCACGACACAGCTAGCGCTTACTCAGgtggaTGTATGGTGTGCACAGACACAGCAGAGGATCGTGGGATATTATCAGGCTAACGCATCTCTATCAGATAGCAGcccATCACCATGTGCTCTGAAAATTGCAGATAAGATCGCGGAGCAGTACAGTAATGCAGTTCTACTGATGattgATGGTAGGAAAATGTCCCCAGACTACCGTGTTCCCCCAATAGTGATGTATGAACATAAAGACTCTCGCTGGACCCTTAAAGACAAACACACAATAATGCTTCATCAGTGGGAGGAGACACGTTTGATTGCCAGCCAGCTGCTGAATTCATTGGATCGCACGCTCCTGGTGGATTTCGACAGCCATTTGGATGACATAAGGAAAGACTGGACCAATCAGAAGCTAAATGCCAAGATTATGGAGCTGGCCTCTCCGGCTAATGGCAGCATGTGAATTGTGTAGAGACATTATCACATAGATAGAATATGCTgagtaatttatttaatgtagaGAATATCTGATTTAAACACTTGGAACAATTTTTTTGGATATCTGATATTTGTCTTATATGCACATGTATAACACTACTGTATTTGAATATGAGTTATAATAATATGGATGTTGAGAAGATGATTGTGTGCTGAAAGATGAGGTACATGCTTGTCTAATAAATTCATACtaaaacaa

Function

symbol description
emc9 Predicted to be part of EMC complex. Orthologous to human EMC9 (ER membrane protein complex subunit 9).

NR:

description
ER membrane protein complex subunit 9-like

GO: NA

KEGG:

id description
K23569 EMC8_9; ER membrane protein complex subunit 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232859.3 True 1059 mRNA 0.43 6 20998115 21002011

Neighbor

gene id symbol gene type direction distance location
LOC103033426 NA coding upstream 1458 20990981 ~ 20996657 (+)
med9 med9,LOC108412951 coding upstream 132330 20862649 ~ 20865785 (+)
nt5m nt5m,LOC107719901 coding upstream 186973 20800120 ~ 20811142 (+)
tnfrsf13b NA coding upstream 264444 20725051 ~ 20733671 (+)
LOC103031004 LOC103031004,LOC108274330,LOC108437322,LOC107726267,LOC107653975,LOC107693649,LOC107719927 coding upstream 289258 20702260 ~ 20708857 (+)
cep55 NA coding downstream 29891 21031902 ~ 21043890 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding downstream 53557 21055568 ~ 21077901 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 140575 21142586 ~ 21144194 (+)
LOC103044640 NA coding downstream 350180 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 428461 21430472 ~ 21474118 (+)
G38062 NA non-coding upstream 16352 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 122839 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 207989 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 452478 20445849 ~ 20545637 (+)
G38081 rbp4 non-coding downstream 42501 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 129619 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 270121 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 315092 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 319828 21321839 ~ 21322611 (+)
G37943 NA other upstream 839776 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1486674 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1513200 19481056 ~ 19484915 (+)
G37749 NA other upstream 1666454 19329368 ~ 19331661 (+)
LOC103022762 NA other upstream 2290387 18645635 ~ 18707728 (+)
G38079 kif22,LOC107664627 other downstream 17158 21019169 ~ 21030797 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 107069 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 164557 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2745458 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2745560 23747571 ~ 23747643 (+)

Expression


Co-expression Network