cep55


Basic Information

Item Value
gene id cep55
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21031902 ~ 21043890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232861.3
AGTGACGTAGCACGCAGCGCTGAGTTTCAAATGGTGTTGGGGTGGTTTGTGTTTGGGGATGTTTGTTTCCGTGTTTTATATGAAAGTGTAAATCGGTTGAATAACTATAAAGGGGTGGGAGTATTCCAGCCATGGCAGCAAAAGGAGCCAAAGGAATAATAGCGAATAAACTCGGATTTAAGAACAGCGGCTCCAAGTCTGTGGAGAGTGAGctggagaaactgaagaagGAGAACGCTCAGCTGAAGAAAACCCTGGATGAAATATCAAAGCAAAACAGACCGAATCCTCATCCACATCATGACTCGGATAAGGCCAGCCTTCTAGAGAGAACTGCTTATCTGGAATCTCTGAGGCAGAAGAACACTCAGCAGCTGTTGGATAAAGAGCAGGAGATTGCCGCTCTGAGGCAGCAGCTGAGGACTGAGGGTGGGGAGCTGGTGGCTTCCCTGCAGAATCAGCtggagaaagacagaaatgAGGCAAAGCAGAAAGAGGAGGCGCTCCACGCTCTCTCACAGGAAACAGAAGATCTGAAAAATAAGCTGCTTGCAGTCTCCCAGAGGTGTGAAGCGCTTCAGAAGCACAACACTGACATACAGGGCTCTACAGGTGAGCTTGTGATGGTCCAGGAGCAACTACGTGATGCCTTGGAGAAGAATCAACAGTGGTTGGTTTATGACCAGCAGAGAGAGGCTTATGTTCAAGGTGTTCTGGCTAGGATggcagagctggagcagcagttaAGCCATTCCAAAGAAGCCAAGTCAGAAGCTAAAGACCGGCCACGGCCGTCTTCTGGGCGTGATCAGGAGCAGGTGCTGCCCACAGTGCAGCGGGAGCTGGACGAGAAGCAGGAGCAGGTTGATCTACTGCAGGCTGAGATGGAGAAGCTGAGGGTCCAGTGTGAAGACAGGAGGTGGGAGGCGGTACAGTTGAAGGAGGAACTACGGGAAAAGCAGAGGAGCAGCCGGCAGCTGGTGGCAGAGGAGAAGGCGCTGGCTGCTGAACACAGAGctgaactgcaaaaaaaactggAGGCGGCCAATGCCAGactagaggaggagaggaagagagcagctgagctgctgctgcagGTGAACCACCTTCAGAATTCCCTATTGAAACAAAACGAAGAGCAAAAACGGATTGCGATTTTGGAGCAACAGGTCCAAATGTCTGCGAAAGACTTTGAGAATGAGAAGTTAGACCGGCAGAGTCTACAGCACCAGCTCCGCAAAGTTCTGAAGGAGCTGCGCAAGGCCAGAGACCAAATCACACGCCTGGAATCTACAaaagaAGCTTATGGCGGGAGGGATGCTGAATACTGCATCCTGCCAGAGACGTCTCCGACAAAGACTTACAATGCACTTGATGAAAGTTACCTGGAGTGTCCCAACTGCAGGACTTCATACCCCACCAGTCAGCATAGAGAACTTCTCATGCACCTGGACTACTGCTTTGGTTAAACTGCAAAACTTcttcagagaaagaaagaagggattgggttttaatattttgtcctttttttaaataatctattttttaatatataaaatggcAAACCgttttgtctgtatttttatgtatttaaaaactgatcACTCCAAGGATTTTACTTGAACAGTAATTGGAATTAGAAAGATTTTCGTGGGTTTGTATCGGGTGGttgtgctttttcttttttttctttataatgctTTGACATGTTATTTTGACAAGAATAAATGGTAACATGTTGAA

Function

GO: NA

KEGG:

id description
K16456 CEP55; centrosomal protein CEP55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232861.3 True 1743 mRNA 0.47 9 21031902 21043890

Neighbor

gene id symbol gene type direction distance location
emc9 emc9,LOC106579550,LOC106590414 coding upstream 29891 20998115 ~ 21002011 (+)
LOC103033426 NA coding upstream 35245 20990981 ~ 20996657 (+)
med9 med9,LOC108412951 coding upstream 166117 20862649 ~ 20865785 (+)
nt5m nt5m,LOC107719901 coding upstream 220760 20800120 ~ 20811142 (+)
tnfrsf13b NA coding upstream 298231 20725051 ~ 20733671 (+)
pde6c pde6c,LOC107557364,LOC107598595 coding downstream 11678 21055568 ~ 21077901 (+)
slc35g1 si:ch211-197g18.2,slc35g1,LOC107664634,LOC107664593,LOC107598601 coding downstream 98696 21142586 ~ 21144194 (+)
LOC103044640 NA coding downstream 308301 21352191 ~ 21352892 (+)
ace ace,LOC107653924,LOC107664635 coding downstream 386582 21430472 ~ 21474118 (+)
dlx3 dlx3,dlx3b,LOC107739764,LOC107557343,LOC107653950,LOC107598678,LOC107708903 coding downstream 581711 21625601 ~ 21629176 (+)
G38062 NA non-coding upstream 50139 20903077 ~ 20981763 (+)
G38059 NA non-coding upstream 156626 20874796 ~ 20875276 (+)
G38010 cops3 non-coding upstream 241776 20783931 ~ 20790126 (+)
G37972 NA non-coding upstream 486265 20445849 ~ 20545637 (+)
G38081 rbp4 non-coding downstream 622 21044512 ~ 21083648 (+)
G38093 NA non-coding downstream 87740 21131630 ~ 21139901 (+)
G38101 NA non-coding downstream 228242 21272132 ~ 21272572 (+)
G38106 NA non-coding downstream 273213 21317103 ~ 21317345 (+)
G38099 NA non-coding downstream 277949 21321839 ~ 21322611 (+)
G38079 kif22,LOC107664627 other upstream 1105 21019169 ~ 21030797 (+)
G37943 NA other upstream 873563 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 1520461 19488899 ~ 19511441 (+)
G37812 mms19,LOC106578995 other upstream 1546987 19481056 ~ 19484915 (+)
G37749 NA other upstream 1700241 19329368 ~ 19331661 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other downstream 65190 21109080 ~ 21128764 (+)
plce1 plce1,LOC107743958 other downstream 122678 21166568 ~ 21296823 (+)
trnar-ccu_1 NA other downstream 2703579 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 2703681 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 2703783 23747673 ~ 23747745 (+)

Expression


Co-expression Network