kif22 (kif22,LOC107664627,LOC107654032)


Basic Information

Item Value
gene id kif22
gene name kif22,LOC107664627,LOC107654032
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21019121 ~ 21030167 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232862.3
GGCCAAGGAGGGCTGGGCTACACATATTCGAAAATAGCCGCTGTTGGGTGTTAAATCTCCGGAGGTAAACTACTGCAGAAAGTCGGTAGTTAGATTTAACTGCTCCAGAACGAGAGGCAGCCGGCGGTGGGGAAATGGCACAGCGTGTAGCTGTGAATGATGTTAATGGATCCAAACGAACGTCAAGGGTTCGTGTTGCGGTGCGGCTTCGGCCCTACATGGACAAGCAGGATGAAAAAGGAGAAGGACCCTGCGTCCGTGGATTAGGACCCCAGTCTTTAGAGATCACCAACTGGAGGAATGCAACAGAGACTCTGCAATATCAGTTTGATGTTTTCCATGGAGAGCAAACGACTCAGCAGGAAGTGTTTTTGTCCTCAGTGAAGCCCCTTATCCCTCACATCCTTAATGGACAGAATGCTAGTGTATTTGCCTATGGACCCACTGGAGCTGgaaAGACCCACACCATGCTGGGCAACCAGGACAATCCGGGGGTGATCCCAAGGGCTGTACGTGAAGTGTTCCAACTGGTGAACACCCAAGAGAGAGACCAGGATGAGTGGAAGTTCTCTGTCGAAATGTCATATTTGGAAATCTACAATGAAAAGGTTTTGGATCTCTTATCTCCAAGCTCTCAGGATCTGCCAATCCGTGAAGACAAGGATAGAAACATCGTCATCCCAGGCCTGACTCTTACTCGCCTCTCCTCCTTCTCGGATTTTCACACTCACTTTGTACCTGCCAGTCTGAATCGTACCACAGCCTCCACCAAACTCAACCAGCGCTCCAGCCGGAGCCATGCAATTCTTCTCATTAAGGTGGTGAAGTCTCAGCGTGTTCCACCTCATCGACAGCTGACTGGGAAACTCTACCTAGTTGACCTGGCCGGCTCAGAGGACAACCGGCGCACAGGTAATCAGGGTATACGCCTGAAGGAGAGCGGTGCCATCAACCTGTCCCTCTTCACTCTCAGCAAAGTGGTGGACAGTTTAAACGCTGGGACCGTGGGCCGTGTGCCGTACAGAGACAGTAAACTCACCCGCCTGCTACAGGATTCGCTGGGTGGCTCCGCCCATTCAGTGATGATTACAAACATCGCTCCTGAGTACAAGTACTACTTCGATACTTTCACCGCCCTCAATTTCGCTGCCAAGTCCAAGCAAATTGTCAACCGACCGTTCGTCAGAGAGACCGTGGCGGCTCCCACAAATGTTACAGGTAAAAGGTCAAGAGAAGAGCAGGAGGCTGGGGGACCAGGAGAACCACAGAATAAGAGGTTGAAGGAGAATAAAAAAGGGGAAATACCATCACCACAAACACAGCCACACAGCCCGGCCGATACGTCAGTGTTGGACAGGCTTCTGGCTCTGGAGAAAATGATGTTGGGCTccccagagaaagagagactcaATTTGCTGAAGACAGTCGCGCAGTCCCGCAAAGAGATCCAGAAACTAAAGGAGAAGCAGAAGGAGTTGGAAGAGAAGGCAGACATGTTAAATAAACTTACGGGTGGTCAGGATAAACCGAAGGATGAGAAAGACGGTGGTGCCCCTCTCTTCAGGTCAGACCTGAACCTTTTAAACAGGAAGCAGTCAACTGCAGCCAAACCCAGGAAACAGCAGGCAGTTGTTATTCCATTACAGGTGAGTCATGTGCAGCCGTTGCAGCAGTGTGCTGTGGTTTGGAAAccatcaaaagaaaaattgagcaaggacaaaaaaacactgcaggaggtcATAAAGGGTAAAGAGAACAGTGGTCCGGAGCCCTCCTGTGATGGAGAGTTGAACTGGGAGTCGCGACTAGACTCCTCACTACTAGAGCAGTCCAAAAAGAAAATCCTTGACACGCTGAACTCTGGATCACTGAAAGAGCTGAAAAGCCTGCAGCTCATTGGTGATAAAAAGGCCAAACTCATTCTGGGCTGGAGAGAAGTTAATGGAGATTTCACACAGGTGGATGACTTAAAGAAAATTGAAGGCATTACAGCGAAGCGTTTCTCATCTTTTATTAAGGCCAACATTCTCAGTGCAATGGGGAAGTGATCATGtatgctttttttctttctgtgaaTAGAAGTAATGGAGCTCCAGAGCTGACTACTTggtctgtttttgtgtttttgatgcTTGTGtggcttttttgtttttaaataaacacattttactttttaaactgtggatacatgtattataattattatgcaTTGGCATGCTAATAAAAGCTGCTATTGTGCTA

Function

symbol description
kif22 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including central nervous system development; somitogenesis; and thigmotaxis. Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia with joint laxity type 2. Orthologous to human KIF22 (kinesin family member 22).

NR:

description
kinesin-like protein KIF22

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0007018 microtubule-based movement biological_process
GO:0048592 eye morphogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0006281 DNA repair biological_process
GO:0001966 thigmotaxis biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10403 KIF22; kinesin family member 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232862.3 True 2241 mRNA 0.48 13 21019121 21030167

Neighbor

gene id symbol gene type direction distance location
LOC103035258 NA coding downstream 868 21003600 ~ 21018253 (-)
lmf1 lmf1,LOC107580192 coding downstream 29003 20981405 ~ 20990118 (-)
pemt pemt,LOC107719881 coding downstream 50575 20876434 ~ 20968546 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding downstream 150041 20866800 ~ 20869080 (-)
cops3 cops3 coding downstream 221174 20783929 ~ 20797947 (-)
rbp4 rbp4 coding upstream 14334 21044501 ~ 21048013 (-)
LOC103035971 fra10ac1,LOC108274300,LOC108431384 coding upstream 52497 21082664 ~ 21105307 (-)
noc3l noc3l coding upstream 266548 21296715 ~ 21320551 (-)
tbc1d12 tbc1d12 coding upstream 294261 21324428 ~ 21349420 (-)
LOC103036789 LOC108431390,LOC108274191,LOC107654041 coding upstream 331071 21361238 ~ 21390673 (-)
G38200 NA non-coding downstream 19495 20998097 ~ 20999626 (-)
G38175 NA non-coding downstream 143604 20874665 ~ 20875517 (-)
G38183 NA non-coding downstream 145485 20873332 ~ 20873636 (-)
G38181 NA non-coding downstream 147289 20871535 ~ 20871832 (-)
G38180 NA non-coding downstream 148571 20870018 ~ 20870550 (-)
G38205 NA non-coding upstream 1756 21031923 ~ 21035047 (-)
G38204 NA non-coding upstream 13283 21043450 ~ 21043889 (-)
G38222 NA non-coding upstream 110552 21140719 ~ 21141112 (-)
G38239 plce1 non-coding upstream 234770 21264937 ~ 21279439 (-)
G38246 NA non-coding upstream 259681 21289848 ~ 21291204 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 339690 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1193469 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1417837 19544225 ~ 19601284 (-)
G37616 NA other downstream 2384023 18633578 ~ 18635098 (-)
G37603 NA other downstream 2445945 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 843153 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 983338 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2350478 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2435052 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2652959 23683126 ~ 23720782 (-)

Expression


Co-expression Network