LOC103035258


Basic Information

Item Value
gene id LOC103035258
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21003600 ~ 21018253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232864.3
ATTTCTGGGAAGCGGATCGGTGTTTCTGAGCTGGGCAGCGGCAGCCGGACAGCAGAGGATCTAAACACCGCCTGATATAAACCCGCTTATTTTGACTATCAGAAAGAAGCACGACCACAGAAAACAGCGGGAAAAACAGAGGAAGCGTCGAGCATTTACAACCACCCGTGGATTATACGGAGGAGatggCGGCAGGTAAAATCCGCTCCACTCGTAAGCTTCGTTCATGGCTGATTGAACAGGTGAACAGTGGTAAATATAATGGCCTCTTGTGGGATAATCCAGAAAAGACCATGTTCCGCATTCCTTGGAAACACGCTGGAAAGCAGGATTTCCGCACTGACGAGGACGGCGCCATCTTTAAGGCGTGGGCGGAGTTTAAAGGGAAGCTCGGTGAGTCTGACCCTGCTTCGTGGAAGACGCGTCTGCGCTGCGCTTTAAACAAGAGCCCGGAGTTCAGAGAGGTCACAGAAAGGTCACAGCTGGACATATCTGAGCCTTATAAAGTCTATATGCTCGTCCCACTGTCAGAACAAGGCGTGGCTGAGGTGAAGAAGGAACATGCTGAGAAAACTGTAAGGAGAAGCAAAAGAAGAcgaagtgaaacagagaagaGTGAAGAAACTCCAGTAAAAATATTCAAGGAGGAGGAAACTGCTGCACAGCAGATTAGTGTGGATATGGCCAGCAGCAGAGAAAATAACATCACTCTTCATTTAGAGGAAGTGACAGAACCTGCAGTCATTTTGAAGCGTGACAACCTGTTTAATGAGATCCAGTTGGATGTAATGATTGAAACGGCCCCTCATTTTGGAGATAATAAAGTTTCTCCCTCCTTTAAGGTGACAGTGTATTACGTTGGGAAGGAGGTGTTGCAGCGGGATGTTCTGGGTGATGATGTCAGAATTGCGTATGTCCCGCCCTCCCCTTCACCCCCGTCGCTGAACGGCTGTACGTTCCCTCGCATCCCGCTGCCCCCGCCGCCCGAACACTTCGACTCTGCTGGCAGCCAGGCCATCTCTACACTGTTGCCGTACATGGAGAAGGGAGTGGTGCTGACCTGCAGTGGGCGGGGCATTTACGCCAAGCGTTTCTGCCAGGGCCGAGTGTTCTGGAGGGGGCCACAGATGGCCGGGTCAAATAAACTGGACAGAGCCCCCGTGCCTACACTGATTTTCAGCAAGGAGCGCTTTAAGCAGGAGTTGGAGGATTTCCGTGCTGGAGGGAATCTGCCTCAGAGTGAGATCACACTGTGTTACGGAGAGGAGCTTGCTGATGGAGATGACCTGTCTAAGAAATGCATTATCATTAAGATTGCTTTTCCATGGGCCACTAAGCAGATCCAGGACGTCCAGTCTCTCCAGAATTCACTGAGCGTCCTCCAGAGCTTGGCCCAGCAGAATCCATCAAAAGAGATCACACTCAACCTTGTGTCATTACCAGTGTAACCAGTGATTATCTAATAGTGTTAGTTCTAATAATCGTAGTCATAGTGTTTTTGTTAAGGTACGTGTATCAAAAAGATCTCCTGAGCATGCACTACAGTAGCATTTTATCACCGTTCACATTTTATTCAAGACTATCCTCCAGTATTACATGCATATTGCAATGTATATGACACTTTATGTGCATCTGAAAGCCTAAGCTGCAGCCAAGGTAGCATACATTTTTTGGCTGCTACGTCAAAGTGAAGTACGCTTCATGTACAGCTAATAAATGCAGCTGACATTTCGAGCACTTTCGAGGGCGCAGCTGAGGTATCCTTCCTGGCACTTAATAACCCGGGACACACAATTCTCTGCAACATGTAAAATGTGCAGAAAGAAAGATTAACAGCACCAAGAACTGGGTCAGAAAGATGGATATTGAAGCTTTCAGagcagagtttgttttaaaatgttgtttttataaatattttatttatatgaagaaattaaaaaacacacaatgttAAGTTCGAGCATGACGTCAATGTGCAGCCTTGTTAGACTTTTCCAGATGTGTGAGCAAAAAGCTACTAAGAAGTAAAACAGTCCTAAAGGGGACTCGTTCTACATCGACTGCAGCCTGGGTGTTGGAACAAATCTGTATATCTGAGAATTATCATGTCATTAGTACACTTTGAGGGAAAGTTTCCCAGtcaaggattaagcctagtcctacaTTAAATCTTCCTTTGTGCTAAGAAAGTCTGTTGCAGAATGCTTGCTCTTTTTTGtttcaagactaggcttaataccAGTCTGGGAAAGTGTGCCCAAGTCTTGTGCTGTAATTATGAttataaaacactaataaagaaaataactacA
>XM_022669330.1
ATTTCTGGGAAGCGGATCGGTGTTTCTGAGCTGGGCAGCGGCAGCCGGACAGCAGAGGATCTAAACACCGCCTGATATAAACCCGCTTATTTTGACTATCAGAAAGAAGCACGACCACAGAAAACAGCGGGAAAAACAGAGGAAGCGTCGAGCATTTACAACCACCCGTGGATTATACGGAGGAGatggCGGCAGGTAAAATCCGCTCCACTCGTAAGCTTCGTTCATGGCTGATTGAACAGGTGAACAGTGGTAAATATAATGGCCTCTTGTGGGATAATCCAGAAAAGACCATGTTCCGCATTCCTTGGAAACACGCTGGAAAGCAGGATTTCCGCACTGACGAGGACGGCGCCATCTTTAAGGCGTGGGCGGAGTTTAAAGGGAAGCTCGGTGAGTCTGACCCTGCTTCGTGGAAGACGCGTCTGCGCTGCGCTTTAAACAAGAGCCCGGAGTTCAGAGAGGTCACAGAAAGGTCACAGCTGGACATATCTGAGCCTTATAAAGTCTATATGCTCGTCCCACTGTCAGAACAAGGCGTGGCTGAGGTGAAGAAGGAACATGCTGAGAAAACTGTAAGGAGAAGCAAAAGAAGAcgaagtgaaacagagaagaGTGAAGAAACTCCAGTAAAAATATTCAAGGAGGAGGAAACTGCTGCACAGCAGATTAGTGTGGATATGGCCAGCAGCAGAGAAAATAACATCACTCTTCATTTAGAGGAAGTGACAGAACCTGCAGTCATTTTGAAGCGTGACAACCTTTCTCCCTCCTTTAAGGTGACAGTGTATTACGTTGGGAAGGAGGTGTTGCAGCGGGATGTTCTGGGTGATGATGTCAGAATTGCGTATGTCCCGCCCTCCCCTTCACCCCCGTCGCTGAACGGCTGTACGTTCCCTCGCATCCCGCTGCCCCCGCCGCCCGAACACTTCGACTCTGCTGGCAGCCAGGCCATCTCTACACTGTTGCCGTACATGGAGAAGGGAGTGGTGCTGACCTGCAGTGGGCGGGGCATTTACGCCAAGCGTTTCTGCCAGGGCCGAGTGTTCTGGAGGGGGCCACAGATGGCCGGGTCAAATAAACTGGACAGAGCCCCCGTGCCTACACTGATTTTCAGCAAGGAGCGCTTTAAGCAGGAGTTGGAGGATTTCCGTGCTGGAGGGAATCTGCCTCAGAGTGAGATCACACTGTGTTACGGAGAGGAGCTTGCTGATGGAGATGACCTGTCTAAGAAATGCATTATCATTAAGATTGCTTTTCCATGGGCCACTAAGCAGATCCAGGACGTCCAGTCTCTCCAGAATTCACTGAGCGTCCTCCAGAGCTTGGCCCAGCAGAATCCATCAAAAGAGATCACACTCAACCTTGTGTCATTACCAGTGTAACCAGTGATTATCTAATAGTGTTAGTTCTAATAATCGTAGTCATAGTGTTTTTGTTAAGGTACGTGTATCAAAAAGATCTCCTGAGCATGCACTACAGTAGCATTTTATCACCGTTCACATTTTATTCAAGACTATCCTCCAGTATTACATGCATATTGCAATGTATATGACACTTTATGTGCATCTGAAAGCCTAAGCTGCAGCCAAGGTAGCATACATTTTTTGGCTGCTACGTCAAAGTGAAGTACGCTTCATGTACAGCTAATAAATGCAGCTGACATTTCGAGCACTTTCGAGGGCGCAGCTGAGGTATCCTTCCTGGCACTTAATAACCCGGGACACACAATTCTCTGCAACATGTAAAATGTGCAGAAAGAAAGATTAACAGCACCAAGAACTGGGTCAGAAAGATGGATATTGAAGCTTTCAGagcagagtttgttttaaaatgttgtttttataaatattttatttatatgaagaaattaaaaaacacacaatgttAAGTTCGAGCATGACGTCAATGTGCAGCCTTGTTAGACTTTTCCAGATGTGTGAGCAAAAAGCTACTAAGAAGTAAAACAGTCCTAAAGGGGACTCGTTCTACATCGACTGCAGCCTGGGTGTTGGAACAAATCTGTATATCTGAGAATTATCATGTCATTAGTACACTTTGAGGGAAAGTTTCCCAGtcaaggattaagcctagtcctacaTTAAATCTTCCTTTGTGCTAAGAAAGTCTGTTGCAGAATGCTTGCTCTTTTTTGtttcaagactaggcttaataccAGTCTGGGAAAGTGTGCCCAAGTCTTGTGCTGTAATTATGAttataaaacactaataaagaaaataactacA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232864.3 True 2312 mRNA 0.46 10 21003600 21018253
XM_022669330.1 False 2249 mRNA 0.46 9 21003600 21018253

Neighbor

gene id symbol gene type direction distance location
lmf1 lmf1,LOC107580192 coding downstream 13482 20981405 ~ 20990118 (-)
pemt pemt,LOC107719881 coding downstream 35054 20876434 ~ 20968546 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding downstream 134520 20866800 ~ 20869080 (-)
cops3 cops3 coding downstream 205653 20783929 ~ 20797947 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 222271 20735303 ~ 20781329 (-)
kif22 kif22,LOC107664627,LOC107654032 coding upstream 868 21019121 ~ 21030167 (-)
rbp4 rbp4 coding upstream 26248 21044501 ~ 21048013 (-)
LOC103035971 fra10ac1,LOC108274300,LOC108431384 coding upstream 64411 21082664 ~ 21105307 (-)
noc3l noc3l coding upstream 278462 21296715 ~ 21320551 (-)
tbc1d12 tbc1d12 coding upstream 306175 21324428 ~ 21349420 (-)
G38200 NA non-coding downstream 3974 20998097 ~ 20999626 (-)
G38175 NA non-coding downstream 128083 20874665 ~ 20875517 (-)
G38183 NA non-coding downstream 129964 20873332 ~ 20873636 (-)
G38181 NA non-coding downstream 131768 20871535 ~ 20871832 (-)
G38180 NA non-coding downstream 133050 20870018 ~ 20870550 (-)
G38205 NA non-coding upstream 13670 21031923 ~ 21035047 (-)
G38204 NA non-coding upstream 25197 21043450 ~ 21043889 (-)
G38222 NA non-coding upstream 122466 21140719 ~ 21141112 (-)
G38239 plce1 non-coding upstream 246684 21264937 ~ 21279439 (-)
G38246 NA non-coding upstream 271595 21289848 ~ 21291204 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 324169 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1177948 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1402316 19544225 ~ 19601284 (-)
G37616 NA other downstream 2368502 18633578 ~ 18635098 (-)
G37603 NA other downstream 2430424 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 855067 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 995252 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 2362392 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2446966 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2664873 23683126 ~ 23720782 (-)

Expression


Co-expression Network