LOC103036789 (LOC108431390,LOC108274191,LOC107654041)


Basic Information

Item Value
gene id LOC103036789
gene name LOC108431390,LOC108274191,LOC107654041
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21361238 ~ 21390673 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232870.3
AGAGGctggaagaaagagagatagataatagagagtcagagagagacagagagaagttTTTCTTCATTCTTGGCTGGAATGTACAGTAACACTCAGTATGGAGCTGCTCCACTGTGGTGCGTCTCCACTGTGTTGAGGGAGGTGACGGAGGAACCGAGCGGGGGAGTGTAGCTGCTGTAACTGCAGTTCATTAGTTCGGTTCAGATAGTGACTCGGTTCTGCTCGCTCTGAACGAATCCTCGGCTTAACTGCAGTCAGTAGGGCTCCACAGAGCATGGTGAGGTGTGCTGAGGTGGGACCCCGGGGTCTGTACAGACTGTAGCCGTGTGTGAGGGTTTACCGGCGGggctggaggagctggagggGCGGATGTGTGCCCGCCGCCTGTCCGGGAACGGTCTCACCGGTCTGGGCGGCGCCGTTATGGAGAGAGCCGCGGGCGGGGAGCCGAACAGGCGGCTGTTCGAAGCCTGCAGGAGCGGAGACCTGGAGCGGGTCAGGAAGCTGCTGAACGCCGCTAATGTGAACAGCAGGGACACGGCGGGCAGAAAGTCCACCCCGCTGCATTTCGCCGCCGGTTTTGGCCGCAGGGATGTGGTGGACCACCTCCTGAAGCACGGGGCTGATGTTCACGCCCGTGATGATGGAGGCCTCGTCTCTCTACACAACGCCTGCTCCTTTGGTCATGTTGAGGTGGTCAGCCATCTGTTGCGGCACGGAGCTGACGCCAACTCAAGAGACAACTGGAACTATACACCTCTCCACGAGGCTGCTATCAAGGGCAAGATCGATGTCTGTATAGTGTTGCTGCAGCACGGGGCTGAGCTAACCATCCGAAACACAGACGGGAGGACTGCACTGGACCTGGCTGAACCTTTCACCAAGGCTGTTCTGACTGGAGAATACAGAAAAGATGAACTTCTGGAGAGTGCAAGGAGTGGAAATGAGGAGAAACTGATGAGCCTTCTCACTCCTTTAAATGTGAACTGTCATGCCAGTGATGGAAGAAAGTCAACCCCTCTGCATCTGGCTGCCGGCTACAACCGGGTGAGGACAGTGCAGCTGTTGTTGCAGCACGGCGCTGACGTCCACGCTAAAGACAAAGGTGACCTTGTGCCTCTTCATAACGCCTGCTCATACGGCCATTATGAAGTGACTGAATTACTCGTGAAGCATGGTGCCTGTGTGAACGCGGTGGACTTGTGGAGGTTCACTCCTCTACATGAAGCTGCATCTAAGAACCGGGTGGAGGTGTGCTCTTTACTGCTCAGCCATGGAGCCGACCCCACTTTCCTCAACTGCCACAACAAGAGTGCCATCGACCTGGCCCCTACCACACTGCTGAAAGAGCGCCTGGCCTATGAGTTTAGGGGGCACGCGTTGCTGAAGGCCATCCGCGAGACAGACTTCATACGCATTAAAAAATATCTCTCTTTAGAAACCATCAACTTCAAACATCCTCAGACCCATGAGACTGCACTGCACTGTGCCGCATCATTGTCAAGCCCCAAGAGGACACAGATATGTGAGATGCTTCTGAGAAATGGTGCCAATATAAATGAAAAGACTAGAGACCTCCTGACACCTTTACACCTCGCTGCTGAGAAGTCCCACAAAGACGTCATCGAGGTGTTAATGAAGTACGAAGCCAAAGTACCGGTAAAGACAGTGGACAGTCAGGGTCAGGCGCCGCTGCAGCGTGTGGCTCAGTGCGGTCACCTCCAGAACTGCAGGCTACTGATCGGCGCTGGCTGTGACCAACCTATCACCTCCCTGCAGGGCTTTTACCCAGCACAGCTAGCCAACCAGAATATACAGGAGAACCTGCAGGAGGGTGTGCTGATGGGAAACTGTGATAAAGACAGGCACCTGCTGGAGGCTTCAAAGTCAGGAGACCTGGAGACAGTCAAGAAACTGTGCACACTGCAGAATGTGAATTGCAGGGATTTGGAAGGCCAACAGTCAACTCCACTCCACTTTGCGTCTGGGTACAACCGTGTGACTGTGGTGGACTATCTGCTGCAGCATGGAGCTGATGTGCACGCTAAAGACAAAGGAGGCTTGGTGCCTTTGCACAATGCCTGTTCTTACGGTCATTACGAGGTGGCTGAGCTGTTGGTAATCCATGGGGCGGTGATTAACGTGGCAGACCTGTGGAAGTTCATGCCCTTACACGAAGCTGCCGCCAAGGGAAAATATGAAATTTGCAAACTACTGCTTCAGCATGGTGCCGACCCAACCAAGAAGAATCGTGATGGGAACACACCCCTGGACCTCGTGAAGGAGGGAGACACAGACATCCAGGATCTCCTGAGGGGCGAGGATGAGCTGCTGGATGCTGCCAGGAAAGGCTGTCTGGCCAGAATCAGCAAAGTCTGTAGACCAGACAACGTCAACTGCAGGAACTCTCAGGGACGCCACTGCACACCTATACATTTGCCAGCTGGTTATAAAAATTTTGAGGCAGCAGAGTATTTGCTGCAGCATGGAGCTGAGGAGAACTCGCAGGACAAAAGCAGACTCATTTCCTTACACAATGCTGCCTCCTACAGAGTGAATGATGTCCGTGCCCTGCTGACTGCAGCCATGCCACCGTCTGCATTACCAACCTGCTTCACACCGCAGGTCTTCAGTGTATCTGCCTCTGCTGAAGCGGTGTCTTCCTCCCTGGCCTCTAACTCCTCAACACATCCCTCCAGATCCAGTATGGAGGCTTTTCACAAGCTGTTGGGGACCTCTGGGGATGAGGGGGCCATGAGAGTGGAGAAGACAGAGGAAGgtGTGGCTCCAGATATGAGTATCAGTCAGTTCCTTCAGAAACTTGGTCTAAAGTATCTTCTCGAGATCTTTGACAGAGAACAGATAACTCTGGACGTTCTGGTGGAAATGGGGCACAAGGAGTTGAAGGAGATCGGAATCAGCGCTTATGGCCACAGGCACAAGATCATCAGAGGAGTGGAGAGACTCATTAGTGCTCCTCAGAGTTTGAACCCCTACTTGACTTTAAACACAGCCAACAGTGGAACCATACTGATTGACCTGGCCTTGGATGAAAAGGAATTTCAGTCTGTTGAGGAGGAGATGCAGAGTACAGTAAGAGAACACAGAGACGGGGGATTTGCTGGGGGGATTTTCAACACATACAGGGTTCTAAAGATCCAGAAGGTTTGCAATAAGAAGTTGTGGGAGAAGTACACTCATCGCAGAAAAGAGGTATCTGAGGAGAACCACAACCACTGCAATGAACGCATGCTCTTCCACGGTTCTCCATTTGTAAATTCCATCATCCACAAAGGCTTTGATGAGAGGCATGCCTATATTGGAGGAATGTTCGGAGCTGGAATCTACTTCGCTGAGAATTCCTCCAAGAGTAACCAGTACGTTTATGGAATCGGAGGAGGCACAGGATGCCCTCTTCACAAAGACAGATCGTGCTACACGTGTGAGAGACAGCTGCTGTTTTGCCGTGTGACTCTGGGGAAGTCGTTCCTGCAGTTCAGTGCTATGAAGATGGCCCATTCACCGCCCGGCCACCACTCAGTCTCTGGTAGGCCAAGTGTTGATGGCCTCGCGCTGGCTGAGTACGTGATCTACAGAGGAGAGCAGGCTTATCCTGAATATTTGATTACCTACCAGATCATCAAACCAGATGGGACTGCTGAGTAACCTGGCATATCTGACATGCCTATGTAGGAGGAGTCTGCTGCATGCACATACTGACATTTTCATCTACTGTATAAATTGTCCTTCCTACTACAGCCTAATCTACTATGTATTACTTTGCAGTGTTAAAACTGTCTGTAGTAGCTGCTTAGTTCGGTGTTCATCCAGCCTGTTTCTAACCTTGTAAATCACCAACTTTCAggtttcaatttaaaatttaatcaaaagtggcttatttattttacaaagacTACTGTGTAtataactatttttttgtatgaGCATGTTAATTTATGAATATTTGTATTGTAATAGAGTTCTATGCTTGAAGGATGACTTGACATGTatgtgattttctttgttttgtgtttgtgataCGGAGTGCTGTACAATGCTCCCAGTAAAGCCAGTATAAAGGAAATACACTGCA

Function

NR:

description
PREDICTED: tankyrase-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232870.3 True 4093 mRNA 0.51 26 21361238 21390673

Neighbor

gene id symbol gene type direction distance location
tbc1d12 tbc1d12 coding downstream 11818 21324428 ~ 21349420 (-)
noc3l noc3l coding downstream 40687 21296715 ~ 21320551 (-)
LOC103035971 fra10ac1,LOC108274300,LOC108431384 coding downstream 255931 21082664 ~ 21105307 (-)
rbp4 rbp4 coding downstream 313225 21044501 ~ 21048013 (-)
kif22 kif22,LOC107664627,LOC107654032 coding downstream 331071 21019121 ~ 21030167 (-)
LOC103039938 NA coding upstream 3115 21393788 ~ 21404557 (-)
LOC103040573 NA coding upstream 90088 21480761 ~ 21579767 (-)
LOC103029147 LOC108443253 coding upstream 245417 21636090 ~ 21644027 (-)
LOC103032007 kat7,LOC108443263,LOC107708935,LOC107739754,LOC107598609,LOC107654043 coding upstream 437455 21828128 ~ 21841369 (-)
LOC103023948 LOC108443262 coding upstream 472816 21863489 ~ 21871502 (-)
G38257 NA non-coding downstream 1676 21359154 ~ 21359562 (-)
G38231 NA non-coding downstream 37078 21321709 ~ 21324160 (-)
G38252 NA non-coding downstream 43893 21317103 ~ 21317345 (-)
G38246 NA non-coding downstream 70034 21289848 ~ 21291204 (-)
G38239 plce1 non-coding downstream 81799 21264937 ~ 21279439 (-)
G38291 NA non-coding upstream 192943 21583616 ~ 21608302 (-)
G38302 NA non-coding upstream 387979 21778652 ~ 21778910 (-)
G38342 NA non-coding upstream 449121 21839794 ~ 21840799 (-)
G38344 ptges3l,si:ch211-131k2.3,LOC107653952 non-coding upstream 453390 21844063 ~ 21852337 (-)
G38356 NA non-coding upstream 559878 21950551 ~ 21953218 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other downstream 681807 20511671 ~ 20679431 (-)
c4h10orf128 NA other downstream 1535586 19818268 ~ 19825652 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 1759954 19544225 ~ 19601284 (-)
G37616 NA other downstream 2726140 18633578 ~ 18635098 (-)
G37603 NA other downstream 2788062 18572691 ~ 18573176 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 482647 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 622832 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 1989972 23380645 ~ 23387442 (-)
LOC111192393 NA other upstream 2074546 23465219 ~ 23510619 (-)
fam13c phyhipl,phyhiplb,fam13c other upstream 2292453 23683126 ~ 23720782 (-)

Expression


Co-expression Network