LOC103038385 (prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040)


Basic Information

Item Value
gene id LOC103038385
gene name prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19422900 ~ 19436284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233562.3
TGACGTCAATGGCAAATTTTTCGATTGGTGTTGACCGTTTCCGGTAAAGTGTCCGTCCGACGGTTTGAGGACAAAAACGAGAGAAAAGAGGGTAAAACCGGAGAGCGAGCCGCACCCAGGAGTTTCGGTGAAAGCCGCAGGTCAGCATGGCTTCGGGCAGCGTGAGCAGTGAGGAGGAGAAGAGCCTCCGCGAGTGTGAGCTCTACGTGCAGAAACACAACATCCAGCAGCTGCTGAAGGACTGCATCGTACAGCTATGCACCTCCCGACCCGAGAGGCCCATGGTATTCCTGAGAGAATACTTCGAAAGACTGGAGAAGGAGGAGGCCAAGCAGCTTCTGAGCCAGCAGAAGACCAGCTCACGGTCCGACTCACGGGAAGATGAAGTTTCTCCTCCCATGAATCCGGTGGTGAAGGGCCGCCGGAGGAGAGGAGCCATCAGCGCCGAGGTTTACACTGAGGAGGACGCCGCCTCCTACGTCAGAAAGgttattcCAAAAGACTACAAAACCATGGCAGCTCTGGCCAAAGCTATTGAAAAGAATGTGCTCTTCTCACATTTGGATGATAACGAGAGGAGTGATATATTTGATGCCATGTTTCCAGTCACCTACATCGCCGGAGAGATAGTTATTCAGCAAGGGGATGAGGGAGACAACTTCTATGTAATTGATCAAGGAGAAATGGATgtGTATGTGAACAATGAGTGGGCGACCAGCATTGGCGAGGGCGGGAGTTTCGGAGAACTGGCGCTGATCTACGGCACCCCCAGGGCAGCCACGGTCAGAGCCAAGACCAACGCCAAGCTGTGGGGCATCGACAGAGACAGCTACAGGAGAATACTGATGGGAAGCActctgaggaagaggaagatgtatgaaGAGTTCCTTAGCAAAGTATCTATTTTAGAGTCTCTGGACAAGTGGGAGCGCTTGACGGTGGCTGACGCTCTGGAGCCGGTGCAGTTTGAGGACAGTCAGAAGATTGTGGTCCAGGGAGAACCAGGCGACGAGTTCTTCATCATTTTGGAGGGCTGTGCAGCAGTACTGCAGCGGCGATCTGAGAATGAGGAGTTTGTGGAGGTGGGACGGTTAGGACCTTCAGACTACTTTGGTGAGATCGCCCTGTTGATGAACCGTCCCCGTGCTGCCACTGTGGTGGCCCGTGGCCCCCTCAAGTGTGTCAAGCTGGACCGGCCGAGATTCGAGCGTGTGCTGGGGCCCTGCTCGGACATCCTCAAACGCAACATCCAGCAGTACAACAGCTTCGTCTCACTGTCCGTCTAAATCAACCCctgcctctctcactctctccctctgtctgtctctctttctctgtctctctctctttctccctcatatacacacacaaacacacttgaACTGCAGGGTCCACCCATGCAGTAggtttatatttttaccattgtacTCATCTTTTATTAAGTTTTCAGCTCACTTATGTTAACATACATCACTTGAACATTGCACAGCGTTCCTCTGTGTTCCTCTGTGTTCCTCTGTGTTCCTCTGTGTTCCTGCTCCCCTCTATCAGATCCGATCAATGTCAGCTACAGACGCGTCGCTGACGGGACAATCAAATGGAATTTACTCCAGCCTTTCCTGAGCAGTCAGTACATATTACCTATTAAAGACCGGACGTAAAGTGGAAGAGAGagattatattttttcaaaagTGTGTTTGAAGAAGACCCTGATTTTCCTTTGGCTTCCTGTGCTTTAGTTGAAGTAGTTTTTTAAGAGtagttttgtaaaaaaacaaactgtaaaaGACCCTCCTTCCGCACCCCTCAGCAGCCGCTGTTAGCATGCTTATGAAGTTACTCTTTATAAAGCCTTACGTGTCTTGCCCTCCCTCCCCCTCACCCCACTGATCTGTCTGTATGAATAGTTTCTGAAGCAAGTCGCATGTAGCGTTATCTGAATGAAGGAGTTTCTGACTGGTTTTATTTTACTGCTCTATTCACCATTCCAGCGTGCAGCCTCTCCAGTTCCTCAGTTGTTTTATTTGCACACGTTCTTGTATTAGATTAGCAGATttgtgattttgctgtttaaaagATTGGCTTACCAGCAGGATTCCAGTAAAGGAGTGATTTTAGTCTCAATGCCGGTGCCAAAGTGCAGGTGGTAACAACACGTTTCACATTTACAGTCACTTTGCAGAGCATCAGTAGGGTATGGAAGCTCATTCCCACcataaagaggataaaataaagCGTTCTTGCTCTAATTGTGGCAGCAGTTTGGCAAGATGGCGATTTAGTATCTTACTGTGATTTTGTTTTCTCCTAATTATGAGGTAACGTCTTAAAATAATGGTATACTGTGGCAAATAATCACCTTACATAAACAAAAAGGTCAAGTAAAAGGTCATActgacttaaaaaatatttcgtTTCAagatactgagtaaaaaaaattcaactaGTTAAGAGCTCAGTCACAATTTCAAGATGTACTCATAATTTTGAGGTACTAATTCAAAAAGTAAGATATGCATCTGAAATTTAAGGGTATTTACTCAAAATTTCAATACGCCAAGTTGAAAATCTAGAGctctaattacagttttatgatTATAATTTAGATTAAAGGTGAGTCTATCTTTAGAAAATCTTTAGAAACTTTGAaattttaagatactaaatcTAGATGAAGCTGCACCAAGTAAAGATTTCCAGctattaaaaagtttaaatacttAAAGTAATGTTTTGATTGTCACTGATATATAAAAAGTCACCGACTTCCTGCCTGCAGGAATCAGGAATGTCCTTCTCCTGTATCTTTGTATGTTTGAGGATGGGCTTCCATAACGAGCGTCTGTTTTAAATTAACcttattaattgattgattgtgtAAATCAAAAGAAGAGTATGCTGTGCCCTACTGATCAGATTTGGTTCAGGTTTCAGAGCACCAGTATTAGAACTGCTGTCAGTATGTTCCACACCGagatttcttgtttgttttcagcTCTGCTTTAGAAGCTTGGTGCCATAAGACATTATGGGATGCATGCTTACGTTTTCTTTTCCTGTTTCCTTCTTTATGGCGGCAGCATGCACGGTTGTTGCGCTCGCTGTGTGAAATGGGCTCATTGGTTCTGTGATGTAGAGAAGAGCTGGGCTGGGAGCAAGGCGGAGGTGAGGAGTTGTACAGCGTTACCTGTGTGGTTCAGTGCAGCCTTACTGAGGGTCACTGTAGCCCTGCAGAGACCAGCTGTTGGTTATgttggattatttttattataaagaagTTGCTTGGTTTTTGAAGTAGATGTTAAACGAATATTTGCTCCTGTATTCAGATTAGTGTTATTAGCAGGATTTTGAACGTTTAATATATTTGACCCCTTTGACAAAAGTGTAGATGTCCCGTGACTTCTGGCATCATAGGAAAATCTCCATATGGAGTGCTTCAAATGTAAGATAAACCCTTCCTTGTTTTCATCACTTTATTTCTGTTGTACATCATATTTTTTCACATCACT

Function

symbol description
prkar1ab Predicted to enable cAMP binding activity; cAMP-dependent protein kinase inhibitor activity; and protein kinase A catalytic subunit binding activity. Predicted to be involved in negative regulation of cAMP-dependent protein kinase activity. Predicted to act upstream of or within regulation of protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be part of cAMP-dependent protein kinase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Carney complex; acrodysostosis; and primary pigmented nodular adrenocortical disease. Orthologous to human PRKAR1A (protein kinase cAMP-dependent type I regulatory subunit alpha).

NR:

description
cAMP-dependent protein kinase type I-alpha regulatory subunit

GO:

id name namespace
GO:0001932 regulation of protein phosphorylation biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233562.3 True 3513 mRNA 0.44 11 19422900 19436284

Neighbor

gene id symbol gene type direction distance location
lrrc45 lrrc45 coding downstream 69111 19342029 ~ 19353789 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding downstream 81952 19330667 ~ 19340948 (-)
LOC103043551 LOC108444285,LOC108273949 coding downstream 131890 19279986 ~ 19291010 (-)
LOC107197613 LOC108429207,LOC108429768 coding downstream 298164 19062857 ~ 19124736 (-)
LOC103034677 NA coding downstream 910815 18503640 ~ 18512085 (-)
mms19 mms19,LOC107578808 coding upstream 21016 19457300 ~ 19487247 (-)
rbp3 LOC108437312 coding upstream 167957 19604241 ~ 19606942 (-)
LOC103040263 NA coding upstream 180127 19616411 ~ 19623377 (-)
LOC103045380 NA coding upstream 191316 19627600 ~ 19632328 (-)
frmpd2 LOC108437313 coding upstream 242165 19678449 ~ 19708609 (-)
G37775 NA non-coding downstream 41968 19261479 ~ 19380932 (-)
G37771 col1a3,LOC108444293,LOC106610502,LOC106589632 non-coding downstream 70423 19275151 ~ 19352477 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 157721 19262976 ~ 19265179 (-)
G37712 NA non-coding downstream 280379 19142219 ~ 19142521 (-)
G37711 NA non-coding downstream 284207 19138466 ~ 19138693 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding upstream 53552 19489836 ~ 19508582 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding upstream 73182 19509466 ~ 19514603 (-)
G37834 NA non-coding upstream 84787 19521071 ~ 19521393 (-)
G37895 NA non-coding upstream 221235 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 340613 19776897 ~ 19792611 (-)
G37616 NA other downstream 787802 18633578 ~ 18635098 (-)
G37603 NA other downstream 849724 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1104943 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1626912 17789951 ~ 17795988 (-)
cntd1 NA other downstream 1717877 17692497 ~ 17705023 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 107941 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 381984 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 1075387 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2437036 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2577221 22013505 ~ 22038504 (-)

Expression


Co-expression Network