rbp3 (LOC108437312)


Basic Information

Item Value
gene id rbp3
gene name LOC108437312
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19604241 ~ 19606942 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233565.3
ATAAACCTCTGCGGAAGACCAAACACTGCAGTAGCACCGGAGCTACACGACCGGCCAGGATGGCTCCAGCTGTAGCACTCTTGGTGTCGCTGCTGGCCTTCAGCAATGCCGTTCACTGTGCTTTTTCTCCAACGCTCATTATGGATATGGCCAAAGTTCTCATGGACAACTACTGCACACCTTCGAAGCTCGCTGGTATGGAAGACGCCATAGAGACTGCCAGCAGCAACACGGAGATCCTCAGCATCCAAGATCCCAACACTCTGGCGGGTGTGCTGACCGATGGAGTTCAAAACACAATCTATGATCCTAGAGTTAAAGTCACCTATGAGCCAGATTACGTTCCTGCGGTTCCGCCACCTATGCCTGAAATTCCTCCGGAGCAGCTGGCCGCAGTGGTTAAGGCCACTGTGAATGTAGACGTCTTGGAGGACAACATCGCCTACCTGAAGATTCAGCACATTATTGGGGAAGAGATGGCACAGAAGATTGGACCACTTCTGTTGGAGCATGTCTGGAGTAAAGTCCTCCCAACCTCTGCCATGGTCTTGGACCTTCGCTATGCAGTCAGTGGAGAGCTGTCGGGCATCCCTTACATTGTCTCGTATTATACCGATGCAGAACCACTCATCCACATTGACTCTGTGTATGATCGCCCCTCAGACAGTACCACAGAGCTCTGGTCCATGCCCACCTTGCTGGGACAGAGGTACGGAACCAGCAAGCCCCTGATTATTCTGACGAGCAAAAACACCGTTGGTGTAGCAGAAGACGTTGCTTACTCCCTTAAAAACCTGAAAAGAGCAACCATCGTAGGAGAGAACACAGCTGGAGGATCTGTGAAGATCGACAAGATCAAGGTCGGTGAAACTGACTTCTACGTCTCGGTCCCTGTGGCCAAATCCACCAACCCCATCAGCGGCAAGAGCTGGGAGGTAACGGGGGTCGCTCCAGACGTTGAAGTAAATGCAGAAGATGCCCTTGACGCGGCAACTGAAATCATTAAGCTTCGTGCTGGAATCCCTGCCACTGTCAAAGCTGCTGCTTCTTTGGTGTCAGAGAACTACGCCTTTGAAAGCATTGGAGAATACGTCGGTCAAAAGCTGGAGGCGCTCGCTGACAGCGGTGAATACAAAATGATTTCCTCAAGGAAGGAACTGGAAGAAAAACTGACGGCAGATCTCGCAAAACTGTCGGCGGACAAGTGCCTAAAAGTCAGGGACAACTCACCTATGATGCTTCCATCGGACATTTCTCCAGAGATGTTGATTGAGCTCATCAAAGTTTCGTTTCAAACCGACGTGTTTGAGAACAACATTGGTTACCTTCGCTTCGACATGTTTGGGGAGTTCAACCAAATCCCAGTGGTTGCTCAGATCATTGTCGAGCAGGTCTGGAACAAAGTGGTGGACACAGACGCAATGATTATTGACCTCAGGAACAACGCCGGAGGGTCTATAAACCCAATTGCCGGGTTCAGCTCTTACTTCTTTGATGCGGACAAGGAGATTGTGTTGGACAAACTATATGACAGACCTTCAGGCACCACAAAAGACCTGGTCACCCTTTCAGAGCTTACTGGGAGAAGATATGGCTCCAAGAAGAGTCTGCTGATTCTGACGAGTGGCGCGACGGCTGGCGCAGCAGAGGAATTCGTTTACATCATGAAGAATCACGGCCGTGCCATGATCATTGGCGAGACGACCAGTGGCTCCTGCCAACCACCGAAGCCTTTCCCAGTTGGAGACACTAGTATCATCCTGGCCATTCCCACCACCCACTCAGACACTGCTCAGGGTATCGCCTGGGAAGGTGCTGGAATCGCCCCTCACATTCCAGTGCCCGCCGAAGCAGCCCTGGACACAGCCAAGGGTATTCTAAACAAGCACTTTTCAGGCCAGAAGTAAGTTTCTAAACATAAAGCTTGTATTATGCTTTTAGCAAGTGCTCTCCCACATGCTTAAACCTTCTGTAGACGTCCTTAAGCGTTCTTTTATCCTATTTTTcctagaaaattaaaaaactggAACCTTGAAATTATGTCAGGTACACTGTTTCAAACCAGTTCAATTTTATTTACGTCTTGTCTGTACTGTCTCTCTACGGTCATGcaattgtatttttgttttacactgAAACGTCATCACGCTAATCCGATACCTCATGTTTGAACGTAGGCAGGAATTTTCAAACTGTGAAATTCATATGGTATAGAAAGACATTGTAATTTTTCCTGTTTTGCAACATATTTGATGTGTAATTATGCTAACTGACATGAAATGATGAACCTAATAAAGACAATGGGGAATAATTCCCATTGATTTTGAAGAAACTA

Function

NR:

description
PREDICTED: retinol-binding protein 3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K23911 RBP3; retinol-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233565.3 True 2335 mRNA 0.48 4 19604241 19606942

Neighbor

gene id symbol gene type direction distance location
mms19 mms19,LOC107578808 coding downstream 116994 19457300 ~ 19487247 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding downstream 167957 19422900 ~ 19436284 (-)
lrrc45 lrrc45 coding downstream 250452 19342029 ~ 19353789 (-)
LOC111192386 rac3b,rac3,LOC100712409,LOC107571767,LOC108444292,LOC106535622,LOC106610298 coding downstream 263293 19330667 ~ 19340948 (-)
LOC103043551 LOC108444285,LOC108273949 coding downstream 313231 19279986 ~ 19291010 (-)
LOC103040263 NA coding upstream 9469 19616411 ~ 19623377 (-)
LOC103045380 NA coding upstream 20658 19627600 ~ 19632328 (-)
frmpd2 LOC108437313 coding upstream 71507 19678449 ~ 19708609 (-)
LOC103041296 LOC108437306,LOC108274024 coding upstream 134191 19741133 ~ 19780495 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding upstream 195060 19802002 ~ 19816181 (-)
G37834 NA non-coding downstream 82848 19521071 ~ 19521393 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding downstream 89638 19509466 ~ 19514603 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding downstream 95659 19489836 ~ 19508582 (-)
G37775 NA non-coding downstream 223309 19261479 ~ 19380932 (-)
G37771 col1a3,LOC108444293,LOC106610502,LOC106589632 non-coding downstream 251764 19275151 ~ 19352477 (-)
G37895 NA non-coding upstream 50577 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 169955 19776897 ~ 19792611 (-)
G37893 NA non-coding upstream 191635 19798577 ~ 19799242 (-)
G37921 NA non-coding upstream 193618 19800560 ~ 19800813 (-)
G37920 NA non-coding upstream 194006 19800948 ~ 19801247 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 2957 19544225 ~ 19601284 (-)
G37616 NA other downstream 969143 18633578 ~ 18635098 (-)
G37603 NA other downstream 1031065 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1286284 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1808253 17789951 ~ 17795988 (-)
c4h10orf128 NA other upstream 211326 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 904729 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2266378 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2406563 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 3773703 23380645 ~ 23387442 (-)

Expression


Co-expression Network