LOC103041897 (vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934)


Basic Information

Item Value
gene id LOC103041897
gene name vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19802002 ~ 19816181 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233572.3
gagaggggggaaggaaagaaagagagtgagaaagagagagagggagagagaggggcgcCTTTCTGTGGAGACAGATTTAACTGAGGGGTTTATGGAGTCTGAAGGTCTGGGGAATGAAGATCTCTGCAGTGGTTTTCCTGACTAGTGTTCTCCTCGGAGATGTATGCAGAGCCATCAACGTCACGGTCACTCCGTCTCCGTTCACAGTGGCCGGCGAGGGCGAGAACGTCACGCTGTCCTGCCAGGTGAGCCAGCGCCGCAAGTCAGACAGCCTTCCCGTGGTGCGCTGGATGTTCCAGCCGGCATGGGGGGGCGACGAGCACCTCGTGGCCAAAGTGAACATGAGGAAGGCCAAGTTCTACGGAAACTACACCAAGAGCTTCCCCACGCCCAAGATGAAGCTGACTGTGGTCAAACAAGGGAAGATCTACAACCTCCtcatcatcaacatcaccaGCACTGACAGAGGCCTCTACAGCTGCAGAGTCCAGGAGTTTAAGAAGCACCGCGAGCGCTGGAAGGCCTCCACCAACTCCACCGCAGCAACAGAACTCAAAGTGCACGTCCTCCCAGACACCAGCGCCAAGGAGGGACTGTGGAGTCTGTTTGAAGACGTGTACCTGTGTGCGGTGCTGATCTGCAGTGTGGGGCTGCTCTGCATGTGTATGTTTACTGTGGCCGTAAGCTGCCAGTACCTGCAGAGGAAGAGGcatttaaaagAAAATTATCATTTGGTCAAGAGTCCTCAGAACAGTTCTGGGGAGACGGTCACTAGCGTGGTCAGCTTGTCTCCTGCTCTACCTAAGAAACAGAGGAagtacaagaagaagaaagcaGTAGAACAGGAGGAGGTGCCGCCGGAGATCCCCGCTAAAGCACCCATTGCAGACAAACTGCGGAAGCCAAAACTTTTAAAACCTCAGCCCAGAAAGATCATTTTGCCCAAGATTGCAGAGGAGAGCCTGACGTATGCTGAGCTTGAACTGGTGAAGCCACTGCCAGACACCAAAGCATCAAAGACAGGAACCGTTTACGCCCAAATCCTCTTTGAGGAGAGAATGATGTAGGGCTGAGCCATTTTACTGAggaattttgttatttataatacattgtatCCATTGTAATGTCTGTTACAGTTTTCTAACCCAGTGTAAATGTATACAGTGTTTTAtacgtgtgtttttttttacgaagtatacatttttgtacatagctttttgtttcctttattttgtCACTTTCACACATTCCACTGTATATCTCTGCGATTGGAATCTAAGCTAAATACCATATATTTCTTTGGTTTTGACTCTTGTAAATTTAACATTCATACAGAGGGTATGAATTCATGTCACATTCCTGCTCTTTGAGGTGTCAGAACATTCCACAACAATAAAGGAAACGGCCAAACTGTCAA

Function

symbol description
vstm4 Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: V-set and transmembrane domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233572.3 True 1417 mRNA 0.48 8 19802002 19816181

Neighbor

gene id symbol gene type direction distance location
LOC103041296 LOC108437306,LOC108274024 coding downstream 21507 19741133 ~ 19780495 (-)
frmpd2 LOC108437313 coding downstream 93393 19678449 ~ 19708609 (-)
LOC103045380 NA coding downstream 169674 19627600 ~ 19632328 (-)
LOC103040263 NA coding downstream 178625 19616411 ~ 19623377 (-)
rbp3 LOC108437312 coding downstream 195060 19604241 ~ 19606942 (-)
LOC111192421 NA coding upstream 35703 19851884 ~ 19858626 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 919122 20735303 ~ 20781329 (-)
cops3 cops3 coding upstream 967748 20783929 ~ 20797947 (-)
rasd1 rasd1,LOC108412952,LOC107653935,LOC107720458,LOC107602420 coding upstream 1050619 20866800 ~ 20869080 (-)
pemt pemt,LOC107719881 coding upstream 1060253 20876434 ~ 20968546 (-)
G37920 NA non-coding downstream 755 19800948 ~ 19801247 (-)
G37921 NA non-coding downstream 1189 19800560 ~ 19800813 (-)
G37893 NA non-coding downstream 2760 19798577 ~ 19799242 (-)
G37916 NA non-coding downstream 9391 19776897 ~ 19792611 (-)
G37895 NA non-coding downstream 143889 19657519 ~ 19658113 (-)
G37927 NA non-coding upstream 32692 19848873 ~ 19849320 (-)
G37928 NA non-coding upstream 35066 19851247 ~ 19851472 (-)
G37929 NA non-coding upstream 35363 19851544 ~ 19851803 (-)
G37934 NA non-coding upstream 160327 19976508 ~ 19976726 (-)
G37936 NA non-coding upstream 197965 20014146 ~ 20014354 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 200718 19544225 ~ 19601284 (-)
G37616 NA other downstream 1166904 18633578 ~ 18635098 (-)
G37603 NA other downstream 1228826 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1484045 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 2006014 17789951 ~ 17795988 (-)
c4h10orf128 NA other upstream 2087 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 695490 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2057139 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2197324 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 3564464 23380645 ~ 23387442 (-)

Expression


Co-expression Network