LOC103045380


Basic Information

Item Value
gene id LOC103045380
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19627600 ~ 19632328 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233583.3
GGTCAGAGCTTGTGTGTATGGAGTGAATGTGAGCGCAGAGTTAAGACTGATGCAGCTGAAGCTGGAACTAAAGGACTGTCCGGATACTTTTGGACACGCAGTCAGAGAGCCTCTGTTATCACGGGGaaattttattatctatttatttattaatttattaatgcattGACTGATCAGtcaattgattgatttatttgacTTGTGATACTCATTTCTGAACTCGCAATTCAACTCGTGCGCGCGCGCTCACTGCAGCATCCGCGCGCCTCCGGAGCATCTCTTCAGCTCGAGTGAACATGCCGCGCGCTCGGGTCTGCTGGCTCGTGCCGGTTTTGCTGGTGCTGGACGTGCTGGGGGTCCAGCTGGTGGTCTCGGACCGCGGGGACGCGCTTTCGGGCAGCATGTTCAAACTGTACGAGAAGTTCAGCAAGGAGCCGCGCGGGCACGCGCACGAGAACACCGTCAGGAGTTTCAGAGCAGCCGCAGTGTCCTCCAACAGCGACATCCTTTTTCACTTCAACCTGACCTCCATCCCTGATTCAGAGGCGATCCTGTCCGCAAGCTTGCACTTCCTGGACCAGCACAGTCGCCATCGGTCCTGGAGCTGCCGGCGTTCCCGGGGACCTTCATGCCGTGTCCAGCACCTCCATCCTTCGTCTCCTGTCCAGCTCGTTCTTCGAGGGAGTTTGGAAAACTCAGGTTCTTCTTCACCTTTGGGGAACATCACACTTGCTCCTCGCAGGAAAGGACCTTGGCAGGTGGCAGACGTGTCCTCGGCCATTCAGGAGGCACAAGCTCGGAATGACCTCATGGTTTCAGTGGAGTTTTACTCTGGCGAGAGGAGGCAAGATCGCTACTTGCCCAACAGCTTGCCTTACCTTCTGGTGTTCGCCAATGACTTGGCCATAACCGAGCCCAACAGCATCGCCATGAGCCTGCAGAGGTACAGCCCGTTACCTGCAGGGGAAGACCGAGAGACTAGACCACCCTTGGTGCCTCTGAGCTCCAGAATCAGAAGAAGCACCAACCATTTACAGGACAACTTCCTTCCAGACATTcaggacaatgacctgaaaCACAAGGACCTGTGGTACAATACTTACTTTGCTCTGAAGCCCAAACCCCTGCCGCGTAGCAAGAGCGACAGACCAGGCCACGAGGTCAAGCACAGAGGGGGCTCGTCTCAGGAGCTAAGCTTTGATGAGAGGACCATGAAAAAGGCCCGTCGTAAACAGTGGAGCGAGCCCCGAGTCTGCGCCCGGCGCTACCTGAGGGTGGACTTTGCAGATATTGGCTGGAGCGAGTGGATACTGGCCCCGAAAGCATTTGATGCGTACTACTGCGCAGGAACCTGTGGATTTCCCATGACCAAGGTTGTTCACCCCTCCAACCATGCCACCATCCAAAGCATCGTGAGGGCCGTGGGGATCGTTCCTGGCGTTCCAGAGCCTTGTTGCGTCCCTGAGAAGATGAGTCCGCTTGCAGTGCTGTTCCTGGACACCAGTAGGAACATGGTGCTGAAGGTCTACCCCAGCATGTCTGTGGACACTTGTGCTTGCCAATAAGAAGACCAAGAGCCTGAACAAACTGTGTTAAAGAGACCGTGGACAAGCTAAAGGCATGATACGCCACCCGCTGCTCAGATAAAGCAATTTCAGACACATTATTCAGTGACTGATCATGGTTTTCTACACACAAAACCTCTAAACCTCAAAAACTGCTACAACAAAACCTTATAAATGCACATTCCGGGTTTCCACTGTATTTAATACTGTCACTTATTGTAATGTGTAGTTAAAATAAACAGCTAAGTTTTTATTAAAGCCTCAGTAAGAAACTGCTAAAACAGAGCCAGGGCCTCAATTACAGATGTGCCGTATGTTTGATATTGACtaaccagccataacattaaaaccatgtGCCTAATTTTGTATAGGTCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048869 cellular developmental process biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233583.3 True 1940 mRNA 0.51 3 19627600 19632328

Neighbor

gene id symbol gene type direction distance location
LOC103040263 NA coding downstream 4223 19616411 ~ 19623377 (-)
rbp3 LOC108437312 coding downstream 20658 19604241 ~ 19606942 (-)
mms19 mms19,LOC107578808 coding downstream 140353 19457300 ~ 19487247 (-)
LOC103038385 prkar1ab,LOC103038385,LOC108444289,LOC107693667,LOC107708993,LOC107602422,LOC108274040 coding downstream 191316 19422900 ~ 19436284 (-)
lrrc45 lrrc45 coding downstream 273811 19342029 ~ 19353789 (-)
frmpd2 LOC108437313 coding upstream 46121 19678449 ~ 19708609 (-)
LOC103041296 LOC108437306,LOC108274024 coding upstream 108805 19741133 ~ 19780495 (-)
LOC103041897 vstm4,LOC108437315,LOC107720466,LOC107708899,LOC107653934 coding upstream 169674 19802002 ~ 19816181 (-)
LOC111192421 NA coding upstream 219556 19851884 ~ 19858626 (-)
LOC103037418 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 1102975 20735303 ~ 20781329 (-)
G37834 NA non-coding downstream 106207 19521071 ~ 19521393 (-)
G37828 ubtd1b,ubtd1,LOC108437310,LOC107693664,LOC107720068 non-coding downstream 112997 19509466 ~ 19514603 (-)
G37829 ubtd1,LOC106578996,LOC103038242 non-coding downstream 119018 19489836 ~ 19508582 (-)
G37771 col1a3,LOC108444293,LOC106610502,LOC106589632 non-coding downstream 275123 19275151 ~ 19352477 (-)
G37776 col1a1b,LOC108444293,LOC108273947 non-coding downstream 362421 19262976 ~ 19265179 (-)
G37895 NA non-coding upstream 25191 19657519 ~ 19658113 (-)
G37916 NA non-coding upstream 144569 19776897 ~ 19792611 (-)
G37893 NA non-coding upstream 166249 19798577 ~ 19799242 (-)
G37921 NA non-coding upstream 168232 19800560 ~ 19800813 (-)
G37920 NA non-coding upstream 168620 19800948 ~ 19801247 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other downstream 26316 19544225 ~ 19601284 (-)
G37616 NA other downstream 992502 18633578 ~ 18635098 (-)
G37603 NA other downstream 1054424 18572691 ~ 18573176 (-)
LOC103047479 LOC108441156 other downstream 1309643 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 1831612 17789951 ~ 17795988 (-)
c4h10orf128 NA other upstream 185940 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 879343 20511671 ~ 20679431 (-)
G38338 g6pc,g6pca.2,LOC107682718 other upstream 2240992 21873320 ~ 21878377 (-)
a1cf a1cf,LOC107654048 other upstream 2381177 22013505 ~ 22038504 (-)
ube2d1 ube2d1,ube2d1b,LOC105891213,LOC107583697,LOC108431657,LOC107733527,LOC107717106,LOC107553913,LOC106607701 other upstream 3748317 23380645 ~ 23387442 (-)

Expression


Co-expression Network