LOC103047415 (LOC103469343)


Basic Information

Item Value
gene id LOC103047415
gene name LOC103469343
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 752588 ~ 754996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234073.2
GACTGAAAACAATCGGTGAATTATGGGAAAGCGAGTTTGTAAGAGGAGCTCTCCATTATAAAGCAACGACGACATGAACTCCAAGTCCCAGAAAGCGGGGAAAAACGAGGGCTGGCCGCATGCGCCTTTTACGTGGGGGAGGTGATAAATTCACAAGCCCCAGTCCATTCCGTAGCAGAAGCGAAAAGGAGTTTCCAACGGGTGGAAATGTGCTCGGTTCTGTCAGGAAAGTCAGCTAGTCGCGGACGGAACAGAAAGAGTTAACATATAACAGACGTTTAAAGTAGCGCAACAGTAGACTTGGGATAGACGGTGGGAGTGTACAGTTATGGAGCTCATTAAAAGCGACGCTGCTCCGGAGGCCGACGATAGGGGTCGGCAGAGAGACGAAAAacatcagcagcagcggcagcagcagaagaGCAGCTCAGAGAAACAAGTGCAGCGGAGTCAGCTGGAGGTCTGTCCGGGGCTCGTGCCTGGAGACCGCGGCCGGGAGAGAACTGATCCCGAGCCCAAAGCCGGTGACGCTGCGGGCGACCATGGCCTCCTGGTGGAGAAGGCGACGTCGAGGGATGTGCAGAATAAAAGGCATCAGCCACCAGGCTGTCCTGGAGCAACCTCCCACCCCCATGGAGCACCGGATGGCCGCCAGGGCAAGAAGAAGCACCGGCGGCGACCGTCCAAGAAGAAGAGGCGCTGGAAGCCGTACTTTATGCTGACCTGGGAGGAGAGGAAGGAGCTGGACGAGCGGGAGACGGCGCGGGCGTCAAGGATTAGAGCAGAGATGTTCGCTAAGGGTCTGCCCGTGGCGCCGTACAACACCACGCAGTTCCTGATGGAGGAGCACGACCGAGAGGAGCCTGACCTCAACACCGAGCTCTGCGGCCGCTTCGAGGACTCTGCGAGTGAGGACGATGCTGCCGCCGCCGAAGACGAGGACATGGAGACCCTGCTGGAAGAAGAGGAAGGAGAGGGAAGCGACGGCATGGGGTGGCCGGGCCACGCGGTAAGAGGTGGTGGGGGAGCGGCcgcggcggcagcagcagcagcagcggcggcagcagctGGAGGCGCAGGCAGCGGTAGCGGAGGAGAGTTTCTGCAGCGGGACTTTTGTGAGACGTACGAGCGCTACCACGTGGAGACGCTGCAGAACATGTCCAAGCAGGAGCTGGTCAGGGAGTACCTGGAGCTGGAGAAGTGCATGTCGCGCCTCGAGGAGGAAAATAACCGGCTGTTGCGGCGCGCGCGCCGGAGCGCGGGAGGGGTTGGTGGTGGCGGTTCTGGTAGTGGGAccgaagcagcagcagcagcaacaacaacaacagcagcagcagcgggcgaaggggaaggaggaggaggcatCGAGAGCGCGCAGCAGCGCGTGCGCGAGTTGGAGAGCGAGGTGGAGAAACTGAAGGCGCTGAACGGAGAGCTTCTGctgaaccagcagcagcagggacTGAACGGTTCTGCAGCGGTAGAGCCAGAGCCCGAGAACGAGAAGCAGTGatggacagagaaaaaaaaacaaaaaatgtggaGAAAATGTTCGGTTTCTGTTTTTAATCGTCCACTCATTCATCGGAGTCATTGTCTTAACTGTAAGCTGCGGTAGCTTTAATATGTGATGCGCTTTTCAGCCAGActggaaaaaacaacaaaaaataaaaaggaggtAAATTTGTTTTCGTACcaagtttttttaatattacagttGTACGTGCGGTCCTATACAGTTGGTCAGTTTGTTGTAacatagtttagttttttttttttcacacgtAATTTCAATTTGCTAAAGACTGCTTCGCTTTTAGAGATGGTGGTCAGCGCGAGGAACAGATGTTACTTTAAACACGCTGTTGTGCTAAAACGTGAGCTTTTCTCACACAGCTGAAAGGCCTGTTTTAAGTTGACAGTAAACATTTTCATGAATGTCCGAGTGCTTTTCGTCTCGATCCGTTattggagataaaaaaaaataccaagagCTTATTTGGCGTTTTGCTGCTGGTGCACCTGATATTCCTGCTTTCAACTGTTAATGCATGACCAAGGCAGTATGTAATAAAACTGGAAAAGTCCTGTTTTCCTCCAAATACAGTGtcgattaaattattttaaaggg

Function

NR:

description
PREDICTED: protein HEXIM-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K15189 HEXIM1_2; protein HEXIM1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234073.2 True 2134 mRNA 0.54 2 752588 754996

Neighbor

gene id symbol gene type direction distance location
acbd4 LOC107662569 coding upstream 7445 735828 ~ 745143 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding upstream 269357 457171 ~ 483231 (+)
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 705025 42719 ~ 47563 (+)
LOC103022594 LOC108424886 coding downstream 83309 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 126371 881367 ~ 881438 (+)
LOC103026642 LOC108424836 coding downstream 215640 970636 ~ 973482 (+)
LOC103037439 LOC108424843 coding downstream 359592 1114588 ~ 1120630 (+)
trnar-ucg NA coding downstream 366400 1121396 ~ 1121468 (+)
G33329 NA non-coding upstream 140477 606044 ~ 612111 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding upstream 176289 500477 ~ 576299 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding downstream 103652 858648 ~ 944469 (+)
G33426 NA non-coding downstream 157392 912388 ~ 921558 (+)
G33454 NA non-coding downstream 233924 988920 ~ 991094 (+)
LOC111192341 NA non-coding downstream 284046 1039042 ~ 1046503 (+)
LOC111192399 NA non-coding downstream 430069 1185065 ~ 1221130 (+)
LOC111192417 NA other upstream 328117 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 520671 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 586198 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 651537 96303 ~ 101051 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 228171 983167 ~ 985381 (+)
trnal-aag NA other downstream 237316 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 614177 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1295746 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2809034 3564030 ~ 3659132 (+)

Expression


Co-expression Network