LOC103022594 (LOC108424886)


Basic Information

Item Value
gene id LOC103022594
gene name LOC108424886
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 838305 ~ 850262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234080.3
CTCTCTCTGCACTCGCTCTCAGTCCCAGCTGAGTCTGTCCCTCAGAGTTTCCTGTTAGCATACCCATCCTCATACTGTAAACACTCTCGGCTAATTCCTGTTCCTGCCCCGCCGCCTCTTCACCCAGCGACGCCGCCGAGCCGCATCACTGAccggcagcagcagcgctgAGGACCGCGGCCGGGCTGATGGAGGTTCCGGCTCGGAGTGACCACACGGCGGTCCTGTCTGGAGACGTGCTGTATGTGTGGGGAGGCTGCCAGTATGTGGATGGAGAAGATGTCGCTTTTCCCAGTGATGAGATCTGGCTCTATGATATGGAAAGTGGAAAGTGgTCTCGCAGGGAAATGGGCGGGGAGGTTCCTCCTCTGCTCTCTCAGGCATGTGGCTCATTTCTCCAgggtatactgtatgttttcgGGGGCTGTGACAGCAATGGCCACACCAACCAGATGTACTGTGTAGACTTGCAGGATGGAAAATACACCTGGAGGAAAATAAAAAGCTGTGTTGGAGCACCTCCCTCCCCCAGAGACAGGCACTCCTGCTGGGTCTTCAAGGACAGgCTCATCTACTTTGGAGGATATAGCTGCAAATCAGTGCGAGAGGTCAGCAACTTCAAGAGTTTCACTGTAGATGAGACATCATGGGCGATGATCGGTAGTGAGTTTTTCCGCTTCTGGGGTTGGAATAATGAAGTTCACATGTTTGAACCCGGCTCTGCCACCTGGACTGAACCACACACCCAGGGTCAGCCTCCTGAGCCAAGATGTTCCCATGCTAATGCCACCCTGGGCACCAAGGGCTACGTCTGTGGGGGACTGGAAACAGAGACCATAGACATTCACTGTTTAGACCTGCTCACATGGACTTGGAGCCAAATgGAGCCTGTGGCCACTCCCGTGCCCAAGGGCCGCATTCTACACAGCCTCACACCCACCTCACACAACACGCTGTTCCTATTTGGAGGCCTCAGCACCTCTGGACAGGTTCTCAATGATGGCTGGGAGTTTGACACTACAGCgagagaatggagagagagggagcatcCTCACAAAGACAAGCCCAGATTGAGGCACTCCGCTGTACAGGGGAAGGATAATGATGTGGTGGTTTTTGGAGGAAGTCATGACTATGTCCTGATGATGGATTCGGTCACGGTGCTCAGGTGTCCATCTCAGACCCACTGCAGAGATGTTCTGGTGTTTCAGACTCAGCCCCTCTCCCTCTCCAGatTATGTGAGGACTGCGTAGGAAAACATGCTTCAACTCTGCAGGAACAAGCATCATGTTTACCACCCAGAGTACAGGAAACTCTTCATAAGAGGATGTCTTACTTCAGAACACTAACAGAACTGCAGGAGCGTGCCACTTTAACACACTGACTTTACAGCCTCATTATAATGCCTTGGTTTGGTCTGCTGCTCTGAGGGCATGTCCATTTAAACAGGAGTGCTGGAATGTATATGATCTGTTTTGGAATTTAAAGGCACCAATAGAATAATAGTGGGCCAGTTCCAATATCCAATATTTTTGCATACTTTTCTGccaatacttaaaaatgtataaaatagacTTGGGGTTGACTACATCTACCTGGAGTCTAACATGTAGTGTTCGTTAGGGgtaaatatgattaaatattgctttaagaaaaaaaaataataataaatatat

Function

NR:

description
PREDICTED: kelch domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234080.3 True 1677 mRNA 0.50 13 838305 850262

Neighbor

gene id symbol gene type direction distance location
LOC103047415 LOC103469343 coding upstream 83309 752588 ~ 754996 (+)
acbd4 LOC107662569 coding upstream 93162 735828 ~ 745143 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding upstream 355074 457171 ~ 483231 (+)
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 790742 42719 ~ 47563 (+)
trnac-gca_9 NA coding downstream 31105 881367 ~ 881438 (+)
LOC103026642 LOC108424836 coding downstream 120374 970636 ~ 973482 (+)
LOC103037439 LOC108424843 coding downstream 264326 1114588 ~ 1120630 (+)
trnar-ucg NA coding downstream 271134 1121396 ~ 1121468 (+)
trnam-cau_18 NA coding downstream 271539 1121801 ~ 1121872 (+)
G33329 NA non-coding upstream 226194 606044 ~ 612111 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding upstream 262006 500477 ~ 576299 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding downstream 8386 858648 ~ 944469 (+)
G33426 NA non-coding downstream 62126 912388 ~ 921558 (+)
G33454 NA non-coding downstream 138658 988920 ~ 991094 (+)
LOC111192341 NA non-coding downstream 188780 1039042 ~ 1046503 (+)
LOC111192399 NA non-coding downstream 334803 1185065 ~ 1221130 (+)
LOC111192417 NA other upstream 413834 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 606388 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 671915 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 737254 96303 ~ 101051 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 132905 983167 ~ 985381 (+)
trnal-aag NA other downstream 142050 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 518911 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1200480 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2713768 3564030 ~ 3659132 (+)

Expression


Co-expression Network