LOC103023211 (LOC108424883,LOC107732187)


Basic Information

Item Value
gene id LOC103023211
gene name LOC108424883,LOC107732187
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 882987 ~ 942741 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234082.3
gagagagagagagagagaagagagaggtgGCCATGGGTCTGTGTGCTGTGCTGCTTATCTGTCTATCGCAGGCTGAACTGGCCAGGGTATGGAGTCAGGAGCTATCAGGTCCGCTCCATGGCCGATCATCACGGTCAGATGGAGATCCCTCAGATGTACAGAGAGTCAGGAGAGACCAGCAGGAGTCCAGCAGACGCTCACAGAACAGGACGACTCAGGAGGCGTCAACAGGCCTGGCCATAGATACACTGCCTGACAACATGACCAAAATAGTGgaggACTCTCAGAGGTATTATTCATGGCGCAGTTTTGGTCCAGGCGACAGGCGGACTCCGGAGCTCTGGGTGGACTTGAACTCGGTCCAGCAGGGTCACGTCCGAGTGCACGGCATTCTGTCCAACACACACCGACAGGCAGCGcgAGTGGCTCTGTCCTTTGACTTCCCCTTCTATGGACACCAAGTGAGGCAAATCACCATAGCAACTGGAGGGTTCATCTTCACGGGTGAGATTACACACCGCATGCTGACGGCTACCCAATATATTGCTCCACTCATGGCCAACTTTGACCCCAGCTTCTCCAAGAACTCCACTGTGCGCTATCTGGACAATGGTGAGGTCTTTGTGGTGCAGTGGGACAAGGTACGGCTTCAGGGCAGGGAGGCAGAGGGAGCCTTTACCTTCCAGGCCAGCCTTCATCGCAACGGCACCATTGTCTTTGGCTACAGGGATGTGCCTTTACCTGTGGAGAAGATTAACTCTACTGAGCACCCGGTGAAGGTGGGCTTGTCTGATGCCTTCATGGCCCTCCTCTCTTCCCCACAAACCCCAGCAGATGCCCGAAGGAGGACGATCTACGAGTACCACCGTGTTGAAGTGGACACTACTAAGATTGTAAACCGCTCTGCTTTTGAGTTCAGCCCATTACCTACCTGTCTCCAGCACACCACGTGTGACCAGTGCCTGCGCGCTAACCTCACTTCAGGTTGTGGCTGGTGCAACGTCCTGCAGAGGTGTTCAGATGGGATAGACAGACACCGACAAGAATGGCTTGACTACAGCTGCTCAGAGGAGGCAAAGGAGGGCACATGTGAAGATTATCCTCCGGGAGGTGACAGCTCCATTAGCCCCTACAGCTCCTCTGCTCCCGCAGCCACCCCCTCTCCCGCAGCCAGGCCAGGTGGCACTGAGGacGACACCAAACTCCTTCACCACCATGGCAATGATTCCCCGACAGTCCCAGCAGATGAGGAGGAAGCTCCAGAGCACACAGCGATCATCGCAGGTGTAGTTGCGGCCCTGGTCCTGCTGGTGTTCCTGACCCTGTTGGCTGTCTACTACATCAACACACATCCCACTGTCGCCCCTCCATTCTACCTCATGCAGCGCCGCACCAATAATTACTGGCCCTCCATGAAGTTTCGGAATCAGGGGTGCCACTCCAGCTACGCTGAGGTTGAACTTGGAGTCCATGAAAAAGAGGGATTCATCGAGGCAGAGCAGTGCTGAGGAGGCAGGTCTTCCGGCACCAAGGAGCCATCTCCAacctttttgttttatctttttttttttttttttttggtgggagAGCTCAAAGACAAAGGGACTATGCTGAGCTATCAACTACCGCTGAGGGGACACCAGAGACTGACCATAGTTACTTCACAAGCTTTCTCTGCCTCCCTAGATTTTACAGTTCCATCCTGCAACACCTCTTATGCTATCCGTTTAGGACCGaggaatttctttttttccttctttttttaaaaataaggaaCTGTGGATGATACTGGCAAGTTCACTGAATACACTCTTTTGATGAGAACGGGATTTGAattagccatgatgaaacccTGCAGTTTATGTACAGTACAATATGACTTTCTAGAATTTTCATTTTGAGAAAagatattttgtgttttctaaTGTGTCGTGTTCAATGAAACGAAGAAAATAGGTCTATGATGCCTAAGACTCAGTTAGCTACATGGACTGGACTGCACTTTAATTGAACAATCTCATTAGTAGTAGTGGAATAATGTGATCTGATCTCATgacttctttttgtatttagccCTTTACAAAATGAAAAGGCTTCATCAGAATGATCAAAGTGTTGCAAGGAACCTGATTTAAAGCCTCTGGCCCACACAGACTGACAAATCAATCAGAAAACAACATATTGCGAACAAATGGGTGTCTTCGcagttgttatttttaaataaaaaagaactgtTTGTGCACTCAATAATGAGAAAACATCTTCTCCAGGCAATAATTCCATTCACATGAACATGGTTTTAATTTACTGTCTAAAGTATTACACTGTCCTGACATAACTCTGTGATTGTTACAGTTTGGGATGATCAAATTACAGTTACACATACAATGAGCTCAGAtgggtaaatatataaaactacagGAACAACACGAGTACATTATTGTTGAAGGTTGCTTTTCAAATGTCATTACAGtgtcacattttaaacatacagtgtGCTAATAGTGAAACAATAAAGTGAAAATGCTGTTTTGAAAAA
>XM_007234083.3
gagagagagagagagagaagagagaggtgGCCATGGGTCTGTGTGCTGTGCTGCTTATCTGTCTATCGCAGGCTGAACTGGCCAGGGTATGGAGTCAGGAGCTATCAGGTCCGCTCCATGGCCGATCATCACGGTCAGATGGAGATCCCTCAGATGTACAGAGAGTCAGGAGAGACCAGCAGGAGTCCAGCAGACGCTCACAGAACAGGACGACTCAGGAGGCGTCAACAGGCCTGGCCATAGATACACTGCCTGACAACATGACCAAAATAGTGgaggACTCTCAGAGGTATTATTCATGGCGCAGTTTTGGTCCAGGCGACAGGCGGACTCCGGAGCTCTGGGTGGACTTGAACTCGGTCCAGCAGGGTCACGTCCGAGTGCACGGCATTCTGTCCAACACACACCGACAGGCAGCGcgAGTGGCTCTGTCCTTTGACTTCCCCTTCTATGGACACCAAGTGAGGCAAATCACCATAGCAACTGGAGGGTTCATCTTCACGGGTGAGATTACACACCGCATGCTGACGGCTACCCAATATATTGCTCCACTCATGGCCAACTTTGACCCCAGCTTCTCCAAGAACTCCACTGTGCGCTATCTGGACAATGGTGAGGTCTTTGTGGTGCAGTGGGACAAGGTACGGCTTCAGGGCAGGGAGGCAGAGGGAGCCTTTACCTTCCAGGCCAGCCTTCATCGCAACGGCACCATTGTCTTTGGCTACAGGGATGTGCCTTTACCTGTGGAGAAGATTAACTCTACTGAGCACCCGGTGAAGGTGGGCTTGTCTGATGCCTTCATGGCCCTCCTCTCTTCCCCACAAACCCCAGATGCCCGAAGGAGGACGATCTACGAGTACCACCGTGTTGAAGTGGACACTACTAAGATTGTAAACCGCTCTGCTTTTGAGTTCAGCCCATTACCTACCTGTCTCCAGCACACCACGTGTGACCAGTGCCTGCGCGCTAACCTCACTTCAGGTTGTGGCTGGTGCAACGTCCTGCAGAGGTGTTCAGATGGGATAGACAGACACCGACAAGAATGGCTTGACTACAGCTGCTCAGAGGAGGCAAAGGAGGGCACATGTGAAGATTATCCTCCGGGAGGTGACAGCTCCATTAGCCCCTACAGCTCCTCTGCTCCCGCAGCCACCCCCTCTCCCGCAGCCAGGCCAGGTGGCACTGAGGacGACACCAAACTCCTTCACCACCATGGCAATGATTCCCCGACAGTCCCAGCAGATGAGGAGGAAGCTCCAGAGCACACAGCGATCATCGCAGGTGTAGTTGCGGCCCTGGTCCTGCTGGTGTTCCTGACCCTGTTGGCTGTCTACTACATCAACACACATCCCACTGTCGCCCCTCCATTCTACCTCATGCAGCGCCGCACCAATAATTACTGGCCCTCCATGAAGTTTCGGAATCAGGGGTGCCACTCCAGCTACGCTGAGGTTGAACTTGGAGTCCATGAAAAAGAGGGATTCATCGAGGCAGAGCAGTGCTGAGGAGGCAGGTCTTCCGGCACCAAGGAGCCATCTCCAacctttttgttttatctttttttttttttttttttggtgggagAGCTCAAAGACAAAGGGACTATGCTGAGCTATCAACTACCGCTGAGGGGACACCAGAGACTGACCATAGTTACTTCACAAGCTTTCTCTGCCTCCCTAGATTTTACAGTTCCATCCTGCAACACCTCTTATGCTATCCGTTTAGGACCGaggaatttctttttttccttctttttttaaaaataaggaaCTGTGGATGATACTGGCAAGTTCACTGAATACACTCTTTTGATGAGAACGGGATTTGAattagccatgatgaaacccTGCAGTTTATGTACAGTACAATATGACTTTCTAGAATTTTCATTTTGAGAAAagatattttgtgttttctaaTGTGTCGTGTTCAATGAAACGAAGAAAATAGGTCTATGATGCCTAAGACTCAGTTAGCTACATGGACTGGACTGCACTTTAATTGAACAATCTCATTAGTAGTAGTGGAATAATGTGATCTGATCTCATgacttctttttgtatttagccCTTTACAAAATGAAAAGGCTTCATCAGAATGATCAAAGTGTTGCAAGGAACCTGATTTAAAGCCTCTGGCCCACACAGACTGACAAATCAATCAGAAAACAACATATTGCGAACAAATGGGTGTCTTCGcagttgttatttttaaataaaaaagaactgtTTGTGCACTCAATAATGAGAAAACATCTTCTCCAGGCAATAATTCCATTCACATGAACATGGTTTTAATTTACTGTCTAAAGTATTACACTGTCCTGACATAACTCTGTGATTGTTACAGTTTGGGATGATCAAATTACAGTTACACATACAATGAGCTCAGAtgggtaaatatataaaactacagGAACAACACGAGTACATTATTGTTGAAGGTTGCTTTTCAAATGTCATTACAGtgtcacattttaaacatacagtgtGCTAATAGTGAAACAATAAAGTGAAAATGCTGTTTTGAAAAA
>XM_007234084.3
gagagagagagagagagaagagagaggtgGCCATGGGTCTGTGTGCTGTGCTGCTTATCTGTCTATCGCAGGCTGAACTGGCCAGGGTATGGAGTCAGGAGCTATCAGGTCCGCTCCATGGCCGATCATCACGGTCAGATGGAGATCCCTCAGATGTACAGAGAGTCAGGAGAGACCAGCAGGAGTCCAGCAGACGCTCACAGAACAGGACGACTCAGGAGGCGTCAACAGGCCTGGCCATAGATACACTGCCTGACAACATGACCAAAATAGTGgaggACTCTCAGAGGTATTATTCATGGCGCAGTTTTGGTCCAGGCGACAGGCGGACTCCGGAGCTCTGGGTGGACTTGAACTCGGTCCAGCAGGGTCACGTCCGAGTGCACGGCATTCTGTCCAACACACACCGACAGGCAGCGcgAGTGGCTCTGTCCTTTGACTTCCCCTTCTATGGACACCAAGTGAGGCAAATCACCATAGCAACTGGAGGGTTCATCTTCACGGGTGAGATTACACACCGCATGCTGACGGCTACCCAATATATTGCTCCACTCATGGCCAACTTTGACCCCAGCTTCTCCAAGAACTCCACTGTGCGCTATCTGGACAATGGTGAGGTCTTTGTGGTGCAGTGGGACAAGGTACGGCTTCAGGGCAGGGAGGCAGAGGGAGCCTTTACCTTCCAGGCCAGCCTTCATCGCAACGGCACCATTGTCTTTGGCTACAGGGATGTGCCTTTACCTGTGGAGAAGATTAACTCTACTGAGCACCCGGTGAAGGTGGGCTTGTCTGATGCCTTCATGGCCCTCCTCTCTTCCCCACAAACCCCAGCAGATGCCCGAAGGAGGACGATCTACGAGTACCACCGTGTTGAAGTGGACACTACTAAGATTGTAAACCGCTCTGCTTTTGAGTTCAGCCCATTACCTACCTGTCTCCAGCACACCACGTGTGACCAGTGCCTGCGCGCTAACCTCACTTCAGGTTGTGGCTGGTGCAACGTCCTGCAGAGGTGTTCAGATGGGATAGACAGACACCGACAAGAATGGCTTGACTACAGCTGCTCAGAGGAGGCAAAGGAGGGCACATGTGAAGATTATCCTCCGGGAGGTGACAGCTCCATTAGCCCCTACAGCTCCTCTGCTCCCGCAGCCACCCCCTCTCCCGCAGCCAGGCCAGGTGGCACTGAGGATTCCCCGACAGTCCCAGCAGATGAGGAGGAAGCTCCAGAGCACACAGCGATCATCGCAGGTGTAGTTGCGGCCCTGGTCCTGCTGGTGTTCCTGACCCTGTTGGCTGTCTACTACATCAACACACATCCCACTGTCGCCCCTCCATTCTACCTCATGCAGCGCCGCACCAATAATTACTGGCCCTCCATGAAGTTTCGGAATCAGGGGTGCCACTCCAGCTACGCTGAGGTTGAACTTGGAGTCCATGAAAAAGAGGGATTCATCGAGGCAGAGCAGTGCTGAGGAGGCAGGTCTTCCGGCACCAAGGAGCCATCTCCAacctttttgttttatctttttttttttttttttttggtgggagAGCTCAAAGACAAAGGGACTATGCTGAGCTATCAACTACCGCTGAGGGGACACCAGAGACTGACCATAGTTACTTCACAAGCTTTCTCTGCCTCCCTAGATTTTACAGTTCCATCCTGCAACACCTCTTATGCTATCCGTTTAGGACCGaggaatttctttttttccttctttttttaaaaataaggaaCTGTGGATGATACTGGCAAGTTCACTGAATACACTCTTTTGATGAGAACGGGATTTGAattagccatgatgaaacccTGCAGTTTATGTACAGTACAATATGACTTTCTAGAATTTTCATTTTGAGAAAagatattttgtgttttctaaTGTGTCGTGTTCAATGAAACGAAGAAAATAGGTCTATGATGCCTAAGACTCAGTTAGCTACATGGACTGGACTGCACTTTAATTGAACAATCTCATTAGTAGTAGTGGAATAATGTGATCTGATCTCATgacttctttttgtatttagccCTTTACAAAATGAAAAGGCTTCATCAGAATGATCAAAGTGTTGCAAGGAACCTGATTTAAAGCCTCTGGCCCACACAGACTGACAAATCAATCAGAAAACAACATATTGCGAACAAATGGGTGTCTTCGcagttgttatttttaaataaaaaagaactgtTTGTGCACTCAATAATGAGAAAACATCTTCTCCAGGCAATAATTCCATTCACATGAACATGGTTTTAATTTACTGTCTAAAGTATTACACTGTCCTGACATAACTCTGTGATTGTTACAGTTTGGGATGATCAAATTACAGTTACACATACAATGAGCTCAGAtgggtaaatatataaaactacagGAACAACACGAGTACATTATTGTTGAAGGTTGCTTTTCAAATGTCATTACAGtgtcacattttaaacatacagtgtGCTAATAGTGAAACAATAAAGTGAAAATGCTGTTTTGAAAAA

Function

NR:

description
PREDICTED: plexin domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234082.3 True 2539 mRNA 0.48 14 882987 942741
XM_007234083.3 False 2536 mRNA 0.48 14 882987 942741
XM_007234084.3 False 2506 mRNA 0.48 13 882987 942741

Neighbor

gene id symbol gene type direction distance location
LOC103022903 lasp1,LOC108424884,LOC108274031,LOC108413872,LOC107689048,LOC108258608,LOC107745925 coding downstream 2684 852955 ~ 880303 (-)
LOC103021879 LOC108424885 coding downstream 51879 760921 ~ 831108 (-)
LOC103026030 NA coding downstream 147236 714271 ~ 735751 (-)
LOC103046699 LOC108424888,LOC108273813 coding downstream 169950 687091 ~ 713037 (-)
LOC103045678 LOC108424889 coding downstream 201638 673185 ~ 681349 (-)
LOC103024569 LOC103024569,LOC108424881,LOC105905426,LOC103382382,LOC105007889 coding upstream 43598 986339 ~ 991081 (-)
LOC103025106 LOC103025106,LOC108424880,LOC107654006,LOC108273509,LOC107988878,LOC106613508 coding upstream 103801 1046542 ~ 1051167 (-)
LOC103032113 LOC108424879 coding upstream 127376 1070117 ~ 1112683 (-)
mrpl58 mrpl58 coding upstream 180475 1123216 ~ 1125264 (-)
trnaq-cug NA coding upstream 182724 1125465 ~ 1125536 (-)
G33389 NA non-coding downstream 270919 605749 ~ 612068 (-)
G33296 NA non-coding downstream 413348 418513 ~ 469639 (-)
G33290 NA non-coding downstream 508841 370373 ~ 374146 (-)
G33289 NA non-coding downstream 510222 369727 ~ 372765 (-)
G33286 NA non-coding downstream 528146 354200 ~ 354841 (-)
G33539 foxk2 non-coding upstream 210691 1153432 ~ 1156177 (-)
G33545 NA non-coding upstream 231699 1174440 ~ 1174655 (-)
LOC111192344 NA non-coding upstream 775907 1718648 ~ 1720446 (-)
LOC111192345 NA non-coding upstream 778070 1720811 ~ 1727257 (-)
G33690 LOC108413510 non-coding upstream 914227 1856968 ~ 1857715 (-)
LOC111192416 NA other downstream 481675 389434 ~ 401312 (-)
G33675 NA other upstream 867845 1810586 ~ 1812622 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 1079330 2022071 ~ 2042303 (-)
G33823 srcap other upstream 1226282 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 1252016 2194757 ~ 2196095 (-)
G33904 NA other upstream 1360521 2303262 ~ 2309329 (-)

Expression


Co-expression Network