LOC103024569 (LOC103024569,LOC108424881,LOC105905426,LOC103382382,LOC105007889)


Basic Information

Item Value
gene id LOC103024569
gene name LOC103024569,LOC108424881,LOC105905426,LOC103382382,LOC105007889
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 986339 ~ 991081 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234088.3
TTGGGGACCGATACCTCTTCTGCCATGACGTACGTTGGGGGGGCCGTGTTGTGATACGTCATGTAAAGTGCGACGAGCGATAAAAACGGGTAAAAATGGCTCCATCTCCAACCAAGAGAAAGGACCGCTCTGAGGAAAAACCAAAAGAACGAGGGAAGGACAAAGCAGGAGTTAAAGAGAATGCTGAAAAGGAGAGGGGCAGAGAGAAGGCCCGCAAACGACGGAACGCATCTAGTGGCAGCAGTAGctccagctccagcagcagttCTGGTTCCAGCTCTGGCTCATCGAGTGGCTCCAGTTCATCCTCTGCTTCCAGCCGCTCTGGCTCCTCCAGCTCACGCTCCTCTAGTTCCTCAAGCTCATCTGGCTCTCCCAGTCCCAGCCGGCGTCGACATGACAACCGGCGACACTCCCGATCTAAATCCAAGTCTGTTAAGAAGGATGACAAGGATCGTCGCAGGAGGAGCCCGAGTCCACGTCCCACTAAGGTTTACTTGGGACGTCTGACCAGAAACGTCATTAAAGAACACATTCAAGAGATCTTCTCAACCTACGGAAAGATCAAGATGATTGATATGCCAGTGGACCGATTGCACCCTCACCTCTCTAAGGGCTATGCTTATGTGGAGTTTGAAACTGCGGATGAAGCAGAAAAGGCTCTCAGACACATGGATGGAGGTCAAATCGATGGGCAAGAGATCACTGCTACAGCTGTTCTGACCCCAAGGGTGCGCCCTGCCCCCCGCAGACTCACGCCTCCACGCAGGATGCCACCCCCACCGCCCATGTGGCGACGAACTCCTCCCCGAATGAGGCGCAGATCACGATCTCCGCGAAGGCGTTCTCCACCGCGCCGCAGGTCCAGATCCAGGTCACCAGGGCGCCGTCGCCATCGCTCCCGCTCCAGCTCAAACTCCTCACGATAGAGGACAGCACGTCTCTCCCCCTTCTGATAAGCGACTCTGCCATAATTTCAAATGAAGAGTCCTCTTGGTGGTTTTTGGACACTGTTTGTTCCAAAACACTGTGCCATATTTGTTCCTAAATAATGCTGTCTCCTTATAGTCACccatttattgtaaatattttaaattatttgaaatgTTAAAGTTTGCATTGTAAATATTTGGTGACTGTTGGATGGTAACTGAAGTATTGTTTCAAACGATGTGTTTGAAGTATAGACATGACCTATAGTCAGTGATTCATTTTatcctgacagttttttttttgttacattattttaagtgtCAGAATTCTTTGTTGTGCTTACTGTGAAAACGGTACATTGAATATTGAAACCGGCCTAGACGATTAGTTTGAGAATAgagttttgtttctttgttgcaGCTCTGGAAGTCCACATAATTAAACTTTGCATAATTAATGTGTATAATCACCCTTTGATTTGATCACTAAATGATACCAGACAAAATATTCAGCATTTTTTCAGCCTTTCTATGTAGCAGTTCATACATTTCATTAACCTGACTTTGATTTTTTGCTGATTTACAgattaacagtaacagtaatgatTAACTGAGTCGCTGTATCTCACCATAAATACTGTGAAATATTCTTGTAAATGGAATAAGCATAATAAAGAAATTCCATTTTAAAAT

Function

NR:

description
RNA-binding protein with serine-rich domain 1-like

GO: NA

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234088.3 True 1625 mRNA 0.46 7 986339 991081

Neighbor

gene id symbol gene type direction distance location
LOC103023211 LOC108424883,LOC107732187 coding downstream 43598 882987 ~ 942741 (-)
LOC103022903 lasp1,LOC108424884,LOC108274031,LOC108413872,LOC107689048,LOC108258608,LOC107745925 coding downstream 106036 852955 ~ 880303 (-)
LOC103021879 LOC108424885 coding downstream 155231 760921 ~ 831108 (-)
LOC103026030 NA coding downstream 250588 714271 ~ 735751 (-)
LOC103046699 LOC108424888,LOC108273813 coding downstream 273302 687091 ~ 713037 (-)
LOC103025106 LOC103025106,LOC108424880,LOC107654006,LOC108273509,LOC107988878,LOC106613508 coding upstream 55461 1046542 ~ 1051167 (-)
LOC103032113 LOC108424879 coding upstream 79036 1070117 ~ 1112683 (-)
mrpl58 mrpl58 coding upstream 132135 1123216 ~ 1125264 (-)
trnaq-cug NA coding upstream 134384 1125465 ~ 1125536 (-)
trnar-ccu NA coding upstream 135314 1126395 ~ 1126467 (-)
G33441 NA non-coding downstream 64693 912388 ~ 921646 (-)
G33389 NA non-coding downstream 374271 605749 ~ 612068 (-)
G33296 NA non-coding downstream 516700 418513 ~ 469639 (-)
G33290 NA non-coding downstream 612193 370373 ~ 374146 (-)
G33289 NA non-coding downstream 613574 369727 ~ 372765 (-)
G33539 foxk2 non-coding upstream 162351 1153432 ~ 1156177 (-)
G33545 NA non-coding upstream 183359 1174440 ~ 1174655 (-)
LOC111192344 NA non-coding upstream 727567 1718648 ~ 1720446 (-)
LOC111192345 NA non-coding upstream 729730 1720811 ~ 1727257 (-)
G33690 LOC108413510 non-coding upstream 865887 1856968 ~ 1857715 (-)
LOC111192416 NA other downstream 585027 389434 ~ 401312 (-)
G33675 NA other upstream 819505 1810586 ~ 1812622 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 1030990 2022071 ~ 2042303 (-)
G33823 srcap other upstream 1177942 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 1203676 2194757 ~ 2196095 (-)
G33904 NA other upstream 1312181 2303262 ~ 2309329 (-)

Expression


Co-expression Network