phyhipl (phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536)


Basic Information

Item Value
gene id phyhipl
gene name phyhipl,phyhiplb,LOC107727060,LOC107746456,LOC107654056,LOC107695536
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23628687 ~ 23685558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235380.3
TAGAAGGGGGGAGCGAGGActgacagagagtgagagagcacgTGAGAGGCACACATCCATCCACATTCCCTCCCCCCTCTACTCTGGTCGAtcaagggagagagagagagagagagaaagagagcgagagagggcaCACTcagcctccctccctccctccctccctccttcctcgAGACCCGTCCTGCGGCACGGGCAGTTTCAGTGTTGCAGGCGTTTGGGGGGTAAATACACCAGAATGGAGGTTCCACGACACAGCCTGAGCAGCCCCACCAGCCCCTGCGAGGAGATGATGAAGAACCTGAGCCTGGACGCCATCCAGCTTTGTGATCGGGAAGgaAATAAGTCCCAGGACAGTGGAATCGCAGAGATGGAGGAGCTTCCTGTTCCGCAGCACATCAAAATCAGCAACATCACCTGCGACTCCTTCAAAATCTGCTGGGATATGGACTCCAGGGTAAAGGAACGCATCACGCACTACTTCATCGACCTCAACAAGAAAGAGAACAAGAACGCCAACAAGTTCAAACACAAGGACGTCCCCACTAAACTGGTAGCGAAGGCGGTGCCTCTGCCCATGACAGTGAGGGGGCACTGGTTCCTGAGCCCCCGCACCGAGTACACTGTAGCAGTGCAGACTGCGTCCAAACAGGGCGACGGGGACTACGCCGTGTCTGACTGGAGCGAGATAGTAGAGTTCTGCACGGCCGATTACTCCACAGTCCATCTCACGCAGCTGCTGGAGAAAGCAGAGGCGATCGCCGGCAGAATGCTCTACTTCTCTGTGTTTTACCGAAACCAGCACAAAGAATACTTCGACCATGCCAGGGAGGCCCAAAACAACAAGATGCTGCCGTCAGTCAAGGACAACAGCGGGAGCCACGGCTCCCCCATCAGTGGGAAGCTGGAGGGCATTTTTTTCAGCTGCAACACCGAGTTCAACACAGGCAAGCCGCCGCAGGACTCTCCGTACGGCCGCTATCGCTTCCAGCTGCCCGCCGAGACGCTCTTCAACCCCGGCACCAACCTGTACTTCGCAGACTTCTACTGCATGTACACGGCCTACCACTACGTCATCCTGGTGCTCGCGCCACACGGCTCGCCAGGAGACGAGTTCTGCAAGCAGAGGCTCCCCCTGCTGGACATCGCTGACAACCGCTTCCTGACATGTGTGCAGGACGAGGACGGGCGCCTGACCTTCCGGCATGCACAGGACCTCATCCTGGAGGTCATCTACACAGACCCGGTGGACCTGAGCCTGGGCACAGTGGCTGAGATCAGTGGCCACCAGCTCATGAGCCTGTCCACAGTCAATGCCAAGAAGGACCCCAGCTGCAAAACCTGCAACATCAGTGTGGGCCGCTAGCCGACCTGCTTCACCTTTGTCCTCCAGCTCCCTCTGATGTGTGGTTTGACATATTGCACCCCCATTTcactttttcgttttttttcctgagttttttttctcttaagtTATCTGTAAACTCCTTCCTATTATGGCCTAAAAGCTCCTCCACAGCAGTAGTTTCTAATCCTGGTCCTGAAGTGTCCCTGTCAGGAATATTTTGTTCTAATCAGAGATGTTTTCCAATTAGATGTGGGGCACTTTCAAAGTCACAACTTTCCtaatctgaaaaacaaaaagaacacaacccAAAAGAGATTTAATCACTGTTGTATGAATTATTGGGCTATAGCCACCCATTTCTGTGATTAGATTAGTAGATTAGCACACAAAAGCTGTGTGCTACTACCCTAAGGGCCAGTTTCCTAAACAGGGACAAATTCTAGTCCTGATGATGATTTTTGCATTGAAGGGAGAATTAAAGCCAAATGCCATTTCACTCCTTGGCTCTACCACTTAGCCATACCCCTTCATTTAGCATGTGCTCTCCTAGGGCTACTGTGTCCTAATTCTTGTTTATCTAGTGGGTTAGGTGGAATATCAGTGATTAATCTTCAAACTCTTCAAATTTCTCAAGAATTCAGTCCAGCAGTGTTCAAAGTTCCAAATACCCACTGTGTATTAAAtactaaagtaaatgtaaagtaaaagtaaatgccTCTGGTATGAAtggcataaaattataataaatagcaTAGAAAACTATAgcaattgtttattttgtattaagcaAGTTGCAGCCTGGCAATTTGCTTAgaacacacagcacatttaggctttcatcattataattagaaaaagacacagaaaatattaaaagtataagtcTTCCCTTTtcagaaattacagataaagccAGAGTgcagtgagtactgtttcctacaccttcaaaacaCTCGGGGAGAAAGGGGAGAAAACTGATACATAAAGAGgtttggctgacccacatggcaacggctatagctcagcttaacactaAACAAATTCTCAGtttcagcaattttttttttcaactaaaCTAGACACTAAAGTCTTCAGGACAGGGGTACTCCAGGACCTGGATTTTAAAACACTGCTCTAAAGCATGCAtctcacagtttttaatttctttttgggtttattgtattgtatcccCAAGTTTTCTGTTTGTTGGGGAGTGTCGATGATGGGATTGTCTTTACAGCGTGAACTTTCCTCCCTTAAACTTCCTATTCCAGAGCTatgatgtacatttttttttattttgccaaaGGTGATGACGGCTAACGTAGCCCACAAGGTCAAGCCGCTGTAGTCGACCGATTGTAGCCAAGTTTAACGAGGCATTATAGACGTGTACTAATGAAACACACTCACGGGATCATTCTAAAGAGCATGCTTCCCGCAGCATGACGCTAATACtgataaaaagttaaaagactCCAGCACTTCTGTAGTCCTCGTTGTCGCTGCAGTGTTTCATGTTATTTATTCAAACTGAAAACCACCACTTATGACTGTGTATAACACAAGAAATAAACATGCAGAGgagtataaatagaaaaatatttattttttattggtgtATAGAAAATGGACGGAACCAGAAGTGCACAATACCGAGGGTTTTTTTGTGTGGCAAGTTCACAGTAgagcaaaataaatgaacaagtaaataaataaataagcagaaACTCACAAATCTGCTGCATAAACCAATGCAGAAAGGAACGTGCACTAAAAGCTAACATTCAAATAGAGTAGTTGATCATCGTGGCTGTGTACACTGAACCGAATCCTGTTAAATCTGGAACATAGCAGATATAACACAGAACAAACCACATCTGATTGCAGAACAGttcaacaactttttttttctttttttctt
>XM_007235381.3
TAAGCCCTCTGTAAGCCAGTCAGTCGCCTGTGGCTATCGGCCTGGTCAGTTGGGTCAGTGCTGGAGCCGGACTCTCGGCCATGACCGATCTGGACTGTGTTCAGAGCGCAGCAGGATGGACCCGTACAGTGGCTGTATGAGGGGGAAGCAGTGTGCAGCTGgaAATAAGTCCCAGGACAGTGGAATCGCAGAGATGGAGGAGCTTCCTGTTCCGCAGCACATCAAAATCAGCAACATCACCTGCGACTCCTTCAAAATCTGCTGGGATATGGACTCCAGGGTAAAGGAACGCATCACGCACTACTTCATCGACCTCAACAAGAAAGAGAACAAGAACGCCAACAAGTTCAAACACAAGGACGTCCCCACTAAACTGGTAGCGAAGGCGGTGCCTCTGCCCATGACAGTGAGGGGGCACTGGTTCCTGAGCCCCCGCACCGAGTACACTGTAGCAGTGCAGACTGCGTCCAAACAGGGCGACGGGGACTACGCCGTGTCTGACTGGAGCGAGATAGTAGAGTTCTGCACGGCCGATTACTCCACAGTCCATCTCACGCAGCTGCTGGAGAAAGCAGAGGCGATCGCCGGCAGAATGCTCTACTTCTCTGTGTTTTACCGAAACCAGCACAAAGAATACTTCGACCATGCCAGGGAGGCCCAAAACAACAAGATGCTGCCGTCAGTCAAGGACAACAGCGGGAGCCACGGCTCCCCCATCAGTGGGAAGCTGGAGGGCATTTTTTTCAGCTGCAACACCGAGTTCAACACAGGCAAGCCGCCGCAGGACTCTCCGTACGGCCGCTATCGCTTCCAGCTGCCCGCCGAGACGCTCTTCAACCCCGGCACCAACCTGTACTTCGCAGACTTCTACTGCATGTACACGGCCTACCACTACGTCATCCTGGTGCTCGCGCCACACGGCTCGCCAGGAGACGAGTTCTGCAAGCAGAGGCTCCCCCTGCTGGACATCGCTGACAACCGCTTCCTGACATGTGTGCAGGACGAGGACGGGCGCCTGACCTTCCGGCATGCACAGGACCTCATCCTGGAGGTCATCTACACAGACCCGGTGGACCTGAGCCTGGGCACAGTGGCTGAGATCAGTGGCCACCAGCTCATGAGCCTGTCCACAGTCAATGCCAAGAAGGACCCCAGCTGCAAAACCTGCAACATCAGTGTGGGCCGCTAGCCGACCTGCTTCACCTTTGTCCTCCAGCTCCCTCTGATGTGTGGTTTGACATATTGCACCCCCATTTcactttttcgttttttttcctgagttttttttctcttaagtTATCTGTAAACTCCTTCCTATTATGGCCTAAAAGCTCCTCCACAGCAGTAGTTTCTAATCCTGGTCCTGAAGTGTCCCTGTCAGGAATATTTTGTTCTAATCAGAGATGTTTTCCAATTAGATGTGGGGCACTTTCAAAGTCACAACTTTCCtaatctgaaaaacaaaaagaacacaacccAAAAGAGATTTAATCACTGTTGTATGAATTATTGGGCTATAGCCACCCATTTCTGTGATTAGATTAGTAGATTAGCACACAAAAGCTGTGTGCTACTACCCTAAGGGCCAGTTTCCTAAACAGGGACAAATTCTAGTCCTGATGATGATTTTTGCATTGAAGGGAGAATTAAAGCCAAATGCCATTTCACTCCTTGGCTCTACCACTTAGCCATACCCCTTCATTTAGCATGTGCTCTCCTAGGGCTACTGTGTCCTAATTCTTGTTTATCTAGTGGGTTAGGTGGAATATCAGTGATTAATCTTCAAACTCTTCAAATTTCTCAAGAATTCAGTCCAGCAGTGTTCAAAGTTCCAAATACCCACTGTGTATTAAAtactaaagtaaatgtaaagtaaaagtaaatgccTCTGGTATGAAtggcataaaattataataaatagcaTAGAAAACTATAgcaattgtttattttgtattaagcaAGTTGCAGCCTGGCAATTTGCTTAgaacacacagcacatttaggctttcatcattataattagaaaaagacacagaaaatattaaaagtataagtcTTCCCTTTtcagaaattacagataaagccAGAGTgcagtgagtactgtttcctacaccttcaaaacaCTCGGGGAGAAAGGGGAGAAAACTGATACATAAAGAGgtttggctgacccacatggcaacggctatagctcagcttaacactaAACAAATTCTCAGtttcagcaattttttttttcaactaaaCTAGACACTAAAGTCTTCAGGACAGGGGTACTCCAGGACCTGGATTTTAAAACACTGCTCTAAAGCATGCAtctcacagtttttaatttctttttgggtttattgtattgtatcccCAAGTTTTCTGTTTGTTGGGGAGTGTCGATGATGGGATTGTCTTTACAGCGTGAACTTTCCTCCCTTAAACTTCCTATTCCAGAGCTatgatgtacatttttttttattttgccaaaGGTGATGACGGCTAACGTAGCCCACAAGGTCAAGCCGCTGTAGTCGACCGATTGTAGCCAAGTTTAACGAGGCATTATAGACGTGTACTAATGAAACACACTCACGGGATCATTCTAAAGAGCATGCTTCCCGCAGCATGACGCTAATACtgataaaaagttaaaagactCCAGCACTTCTGTAGTCCTCGTTGTCGCTGCAGTGTTTCATGTTATTTATTCAAACTGAAAACCACCACTTATGACTGTGTATAACACAAGAAATAAACATGCAGAGgagtataaatagaaaaatatttattttttattggtgtATAGAAAATGGACGGAACCAGAAGTGCACAATACCGAGGGTTTTTTTGTGTGGCAAGTTCACAGTAgagcaaaataaatgaacaagtaaataaataaataagcagaaACTCACAAATCTGCTGCATAAACCAATGCAGAAAGGAACGTGCACTAAAAGCTAACATTCAAATAGAGTAGTTGATCATCGTGGCTGTGTACACTGAACCGAATCCTGTTAAATCTGGAACATAGCAGATATAACACAGAACAAACCACATCTGATTGCAGAACAGttcaacaactttttttttctttttttctt

Function

symbol description
phyhiplb Predicted to be active in cytoplasm. Is expressed in dorsolateral placode; intermediate cell mass of mesoderm; nervous system; and ventral mesoderm. Orthologous to human PHYHIPL (phytanoyl-CoA 2-hydroxylase interacting protein like).
phyhipl Located in cytoplasm.

NR:

description
phytanoyl-CoA hydroxylase-interacting protein-like isoform X1

GO: NA

KEGG:

id description
K24497 PHYHIP; phytanoyl-CoA hydroxylate-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235380.3 True 3272 mRNA 0.46 5 23628687 23685558
XM_007235381.3 False 3095 mRNA 0.45 5 23659130 23685558

Neighbor

gene id symbol gene type direction distance location
bicc1 bicc1,LOC107653928,LOC107695510 coding upstream 34645 23418853 ~ 23594042 (+)
tfam NA coding upstream 232309 23387980 ~ 23396378 (+)
LOC111192392 LOC108416223 coding upstream 628064 22998679 ~ 23000623 (+)
dkk1 dkk1 coding upstream 1257200 22368776 ~ 22371487 (+)
prkg1 prkg1,prkg1b,LOC107695529,LOC106589397 coding upstream 1278605 22097751 ~ 22350082 (+)
LOC111192424 NA coding downstream 715560 24401118 ~ 24402659 (+)
LOC111192396 LOC108411010 coding downstream 946145 24631703 ~ 24648610 (+)
LOC103037544 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 967071 24652629 ~ 24663580 (+)
mto1 mto1 coding downstream 1011578 24697136 ~ 24713813 (+)
LOC103035992 NA coding downstream 1045342 24730900 ~ 24744132 (+)
G38633 NA non-coding upstream 104817 23520932 ~ 23523870 (+)
G38628 NA non-coding upstream 114719 23495072 ~ 23513968 (+)
G38611 NA non-coding upstream 174925 23453364 ~ 23453762 (+)
G38585 ube2d2,ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC107553913,LOC106607701 non-coding upstream 241266 23380968 ~ 23387421 (+)
G38589 NA non-coding upstream 273562 23349878 ~ 23355125 (+)
G38717 NA non-coding downstream 92716 23778274 ~ 23845827 (+)
G38710 NA non-coding downstream 98407 23783965 ~ 23784746 (+)
G38723 NA non-coding downstream 144928 23830486 ~ 23951902 (+)
LOC107197179 NA non-coding downstream 700178 24385736 ~ 24388302 (+)
G38832 NA non-coding downstream 740888 24426446 ~ 24426725 (+)
plce1 plce1,LOC107743958 other upstream 2331864 21166568 ~ 21296823 (+)
lgi1 lgi1,lgi1b,LOC107743957,LOC107664615,LOC107598600,LOC107654035,LOC107708938 other upstream 2499923 21109080 ~ 21128764 (+)
G38079 kif22,LOC107664627 other upstream 2597890 21019169 ~ 21030797 (+)
G37943 NA other upstream 3470348 20155728 ~ 20158339 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other upstream 4117246 19488899 ~ 19511441 (+)
trnar-ccu_1 NA other downstream 61911 23747469 ~ 23747541 (+)
trnar-ccu_2 NA other downstream 62013 23747571 ~ 23747643 (+)
trnar-ccu_3 NA other downstream 62115 23747673 ~ 23747745 (+)
trnar-ccu_4 NA other downstream 62217 23747775 ~ 23747847 (+)
trnar-ccu_5 NA other downstream 62319 23747877 ~ 23747949 (+)

Expression


Co-expression Network