LOC103031867


Basic Information

Item Value
gene id LOC103031867
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 25016336 ~ 25020657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235879.3
CGTCTGGCAACCCTGAGAACCCTCCGTCTATGAGCTTTGTTGACGTTAGCCTGAGAGGATAGCATGCTACCTGCTTTAGCCTGTTAATACACAGGATTATATAGTATTGTGGGGATATAACGCGGTAgttgtgtgttttaatgcttGCTTTAGGCGAGACTTGCTGAAATGTGTGAGCAGTTTTTATATGGGtgataaataatgaatttattCTAGTAAAGCTAGCTGGGCTCGTTGGGTTtaaactaggttagctaatcgCTGTTTCTGCTGTTTAACACTTCACAGTGAGAGGAGACCTCCAGCACAGCAGCCATGTCGAAAGTGGAACGCCTGAATGCCCGGGTTGCCAAATTGCTCACAGTCGCCGTACAAGAAGTGTTGGAAGCCGTGAGGGAGACGGTCTCGGAATACCAGGAAAAAACTGccagaacacagagagagaacgagagactcAGGAAAAAGTTACATGAACTCCAGGCCAAATCAACCAGAAATGATGGAGGGGACCATCCTGTTAGTCCAAGCCATGATTTTCTGAAAAGGTCTGAAACTGACTCTTCATCGATCAGCGTTCAGAAGAATGGAGAGGTGAAGAAGACACTTGACTGTCTAAATGTTGAGCAGACAGATCTCAGCGAACCAGACACGAGTCCTACCTATCCTGAACCTTCCCGTCAAAGCCCACTAGTGTTTTCCTACGATTTGGAGCCAAAGGTACAACCATCTACATCTGGGCTTGATGTCAAAGCAGAAACAGAGCGTCAAGTCTTGGTTCCTGAGCTCTGTAAATCATCAGACTtcatttcccataatgccacaTCAcctaaaaagacagaaaatcgTGCAAGGCAGTACAGTACAAACACAAGCGTTAATAAAGTCTCTACTGACAACCAGCTTCATTTGTCAGTTCATGAGATCAAAACGGAAGCAGAAACGGACGACTACGTGGGGTACGCACCTCAAGAATTGTTTTACGAGGCTATAGCATTTCGCACAAATGTAGAACAGGCCGAACAACCCAGCGGCTCTGGACTCCAGTTTGACCTTAATGGACCTTTTGACAGGCTGACGGCTGAGGACATGAACGATATTAACGCCACTCTAGATGTAAGGAACCAGAGACACAATGAACTTCTAAATGGCTTCCCATTCAGAAACGTCCACGAAAAGCGCTTCTGCTGCCCCTTCTGCGGACGGAGCTTCAGCCACGCCGGAGACTTCAAGAAGCACAAGAGGGTTCACACGGGAGAAAAGCCGTATCTGTGCACTATATGTGGCAAACGCTTCAGTCAGTCCGGCTACCTGAAGATCCATCAGAGGTACCACACAGGGGAACGGCCGTACGGCTGCGGCCTCTGTGGAAAACGCTTTAGCCACTCCAGTAACTACAGAAAGCACCAACAGACTCATATTGGTCAGAACATTTAGGATTGGTGATTGTATTTTGACATTTTGGTGAACCTGCAGGTGTAGACTGCTCCAAATGACAGGACTTTGTTGTGAATTTGAAATTGTTCTAGAAGTATTATAATAGGAATACTGCAGTATGTTGTGATTGGACACTTCATGACTGCAAATTCTGCCGCTTATGtctggttcacactacacgaatATATAAGTAGTCAGGTGGTTGTGCTGTTCACCATGGGAAATTGCAGACTCACTTTTCCAAAAACAGAACTAAACGCACACAAGAACTAGTGGTGCCATGCCAGAGAATGTCTAGAGAAGATAATATTCACCAGAAGTGAGTCCaatgaatgggttcatatggaGCAGTTGAGCAAAATGagtttatatatgtttgatCATTTTGTACTGAAAATGTTCGCATTTCCTCAACACAGATTAATATCAAACTGTTACTGCTCAGGCTGTAACTGCAGGATCAGcccaccaaccaatcagctcacagtagcagtaatccAGCATCTTCACTCACTGAAAcatgtttactgtagaaaagtTTTCTTAGCTTTTgtaaaatagttcattttacttttctaaaattaaaggaataccCTGGACAAGTgtataattactatttttaatttaagtttttagcCATTTAGCTCTGTTCACCCCATTCATGGAGGACTCACTCGCAAGCTCTGTTGTGTTTAAGTTATTTTCTGATATAACAGGAGAAACAGAAAGTGGGCACGCTCTTAATAAACAGCACTGATCATTCAGAAGATATTTTGGTTGGACACATGGTTCTCTCTCTACATTATTCCATTGGCTGTAGGTAGCTGCTGCTCACAGACTTACAGTTGTTGACTGGTCTAGATATTATACCTGCTAGATGTTTGCTGGGTGTACGTGACTGGTTAGCAATGACTTGGTAAGGGCTCGGCGAGCACCTTTCAGCAGTTCACAGTACACGAGTGAGTGTGTGTCGAGTGATTGCCAGTGTGCTTCTGAGCAGAGGTTTTTTAGTCAGcaatctgcaaaaaaatatgggCTAAAATCGTATAGTGTGAGCTAGCCATtaaagtaaaactcttccatttttatctaataaatattaaaccATGTTGACCTGA
>XM_022669397.1
ACGTCTGGCAACCCTGAGAACCCTCCGTCTATGAGCTTTGTTGACGTTAGCCTGAGAGGATAGCATGCTACCTGCTTTAGCCTGTTAATACACAGGATTATATAGTATTGTGGGGATATAACGCGGTAgttgtgtgttttaatgcttGCTTTAGGCGAGACTTGCTGAAATGTGTGAGCAGTTTTTATATGGGtgataaataatgaatttattCTAGTAAAGCTAGCTGGGCTCGTTGGGTTtaaactaggttagctaatcgCTGTTTCTGCTGTTTAACACTTCACAGTGAGAGGAGACCTCCAGCACAGCCATGTCGAAAGTGGAACGCCTGAATGCCCGGGTTGCCAAATTGCTCACAGTCGCCGTACAAGAAGTGTTGGAAGCCGTGAGGGAGACGGTCTCGGAATACCAGGAAAAAACTGccagaacacagagagagaacgagagactcAGGAAAAAGTTACATGAACTCCAGGCCAAATCAACCAGAAATGATGGAGGGGACCATCCTGTTAGTCCAAGCCATGATTTTCTGAAAAGGTCTGAAACTGACTCTTCATCGATCAGCGTTCAGAAGAATGGAGAGGTGAAGAAGACACTTGACTGTCTAAATGTTGAGCAGACAGATCTCAGCGAACCAGACACGAGTCCTACCTATCCTGAACCTTCCCGTCAAAGCCCACTAGTGTTTTCCTACGATTTGGAGCCAAAGGTACAACCATCTACATCTGGGCTTGATGTCAAAGCAGAAACAGAGCGTCAAGTCTTGGTTCCTGAGCTCTGTAAATCATCAGACTtcatttcccataatgccacaTCAcctaaaaagacagaaaatcgTGCAAGGCAGTACAGTACAAACACAAGCGTTAATAAAGTCTCTACTGACAACCAGCTTCATTTGTCAGTTCATGAGATCAAAACGGAAGCAGAAACGGACGACTACGTGGGGTACGCACCTCAAGAATTGTTTTACGAGGCTATAGCATTTCGCACAAATGTAGAACAGGCCGAACAACCCAGCGGCTCTGGACTCCAGTTTGACCTTAATGGACCTTTTGACAGGCTGACGGCTGAGGACATGAACGATATTAACGCCACTCTAGATGTAAGGAACCAGAGACACAATGAACTTCTAAATGGCTTCCCATTCAGAAACGTCCACGAAAAGCGCTTCTGCTGCCCCTTCTGCGGACGGAGCTTCAGCCACGCCGGAGACTTCAAGAAGCACAAGAGGGTTCACACGGGAGAAAAGCCGTATCTGTGCACTATATGTGGCAAACGCTTCAGTCAGTCCGGCTACCTGAAGATCCATCAGAGGTACCACACAGGGGAACGGCCGTACGGCTGCGGCCTCTGTGGAAAACGCTTTAGCCACTCCAGTAACTACAGAAAGCACCAACAGACTCATATTGGTCAGAACATTTAGGATTGGTGATTGTATTTTGACATTTTGGTGAACCTGCAGGTGTAGACTGCTCCAAATGACAGGACTTTGTTGTGAATTTGAAATTGTTCTAGAAGTATTATAATAGGAATACTGCAGTATGTTGTGATTGGACACTTCATGACTGCAAATTCTGCCGCTTATGtctggttcacactacacgaatATATAAGTAGTCAGGTGGTTGTGCTGTTCACCATGGGAAATTGCAGACTCACTTTTCCAAAAACAGAACTAAACGCACACAAGAACTAGTGGTGCCATGCCAGAGAATGTCTAGAGAAGATAATATTCACCAGAAGTGAGTCCaatgaatgggttcatatggaGCAGTTGAGCAAAATGagtttatatatgtttgatCATTTTGTACTGAAAATGTTCGCATTTCCTCAACACAGATTAATATCAAACTGTTACTGCTCAGGCTGTAACTGCAGGATCAGcccaccaaccaatcagctcacagtagcagtaatccAGCATCTTCACTCACTGAAAcatgtttactgtagaaaagtTTTCTTAGCTTTTgtaaaatagttcattttacttttctaaaattaaaggaataccCTGGACAAGTgtataattactatttttaatttaagtttttagcCATTTAGCTCTGTTCACCCCATTCATGGAGGACTCACTCGCAAGCTCTGTTGTGTTTAAGTTATTTTCTGATATAACAGGAGAAACAGAAAGTGGGCACGCTCTTAATAAACAGCACTGATCATTCAGAAGATATTTTGGTTGGACACATGGTTCTCTCTCTACATTATTCCATTGGCTGTAGGTAGCTGCTGCTCACAGACTTACAGTTGTTGACTGGTCTAGATATTATACCTGCTAGATGTTTGCTGGGTGTACGTGACTGGTTAGCAATGACTTGGTAAGGGCTCGGCGAGCACCTTTCAGCAGTTCACAGTACACGAGTGAGTGTGTGTCGAGTGATTGCCAGTGTGCTTCTGAGCAGAGGTTTTTTAGTCAGcaatctgcaaaaaaatatgggCTAAAATCGTATAGTGTGAGCTAGCCATtaaagtaaaactcttccatttttatctaataaatattaaaccATGTTGACCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235879.3 True 2552 mRNA 0.43 3 25016337 25020657
XM_022669397.1 False 2550 mRNA 0.43 3 25016336 25020657

Neighbor

gene id symbol gene type direction distance location
pkmyt1 pkmyt1 coding upstream 8309 24995486 ~ 25008027 (+)
pelo pelo,LOC107653258 coding upstream 150382 24848136 ~ 24865954 (+)
LOC103035674 LOC108411004 coding upstream 229626 24773731 ~ 24786710 (+)
LOC103035168 sult1st6,LOC108274358,LOC108411008,LOC108274122,LOC108411004 coding upstream 250600 24751051 ~ 24765736 (+)
LOC103035992 NA coding upstream 272204 24730900 ~ 24744132 (+)
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding downstream 1534 25022191 ~ 25025894 (+)
LOC103022724 NA coding downstream 273596 25294253 ~ 25333929 (+)
LOC103022410 NA coding downstream 338802 25359459 ~ 25364883 (+)
LOC111192426 NA coding downstream 400668 25421325 ~ 25433217 (+)
LOC103024180 tlk2,LOC108431425 coding downstream 415798 25436455 ~ 25461136 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding upstream 23358 24945980 ~ 24992978 (+)
G38947 tgfb1i1 non-coding upstream 54151 24959233 ~ 24962185 (+)
G38946 NA non-coding upstream 63360 24948785 ~ 24952976 (+)
G38905 LOC108413689,LOC108274218,LOC101064018,LOC103392690 non-coding upstream 176971 24835552 ~ 24839365 (+)
G38907 NA non-coding upstream 202499 24769159 ~ 24813837 (+)
G39119 NA non-coding downstream 187840 25208497 ~ 25208996 (+)
G39123 NA non-coding downstream 197390 25218047 ~ 25218306 (+)
G39177 NA non-coding downstream 348122 25368779 ~ 25369315 (+)
G39185 NA non-coding downstream 392994 25413651 ~ 25413994 (+)
G39191 NA non-coding downstream 442109 25462766 ~ 25465369 (+)
G38870 NA other upstream 398884 24616784 ~ 24617452 (+)
G38817 NA other upstream 1041816 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1266143 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1266245 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1266347 23749917 ~ 23749989 (+)
G39179 NA other downstream 354302 25374959 ~ 25375344 (+)

Expression


Co-expression Network