LOC103022724


Basic Information

Item Value
gene id LOC103022724
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 25294253 ~ 25333929 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237299.3
CTCTCACAGTGTGTTCTCTTTACTCAGGGAGAAGCAGCTCCCCTGGATTACTCCGAGACCCTGCGGCTGCGAGGACGAAAACAAGAAGACGtgactgagggagagagagagagagaaagaaagaaggaaggaaagaagatCCATCCTAACCCATTGTCCCACCCAGAACTGGAAAATAAGAGCTGTTGCATGTAAGCCAAACCCACAGGACTGAAAGGAGAGATAGAGGACAGGACTGGTCCAGCCGTCTGTCTGCTTTTGGGGTCTTCTCTGTTCCCACCAGTCACCGGAGCAGCCAGGATGGAGGGGGAGATGAAGGAGAGGAGGAAGATCCAGTTCTCTGTGCCCTCTGCTGTGCCCACCCAGCTGGACCCTAAACAAGTGGAGATGATTCGGCGACGGAGACCAACGCCTGCGACCCTCTTCCGTACGACTGACCATCCATCCCCAGAGGAGGAGAATCCAGGCCATCAGTTGGCTGTTTGTGATAATGGACTTTTGATGGGAAAACGAGTAAACACATCCATCTATCAGCCCCCGTCACTCACAGCGGTTCAGAAGATGGTGGAAGCTCACATGCAGTCAGAAACAGGCCAAGACAGTCCTTCCTCAGAAACCTCAGACAACGAAGAGGCTTCCCCGGACTCAGATAGAGATGACTCAAGATCTGATGAGTTAGAGCATCACCCAGGACACGAGGACACAGCTGAGGAACAGGACTCCACCCTCAGGCATGCTCCCGGGGAAGACAATGAGGGAGAACTACAGGAAGGATTTCACAGGAAAGCAGAAACCAGAGATAATGGAGACATTCAGAAAACGGCGCAAGCTGAAACCCCGTCTCTGAAGTTGGAGTCTAATTACCTGTGCACAGAATCACCTGAAAACACAGAGCTCCCCCCGAACCCTGTCACAGATCTTCCAGATGACACcagatctgaccaatcagaagatCAAGATCACTCTGCACCCAAGGTCACAGACAAGGGCACAGTCCCCACCCTGCTGTACGATGCTCCATGTGAAGGGGCGTCAGCTGAAACAGAAGACGAAGAGGAAAGAGTGGGAAAAAGTGCAGAAAGCCCAGAAAAGAGGAAGAGCATGGAGAAAGGGGAAGACTGAGATTACCTGATGAAATCAGTTGGTGTATTGATCcatgttaaaattaaagttaagtgaattatatgaatttataagagatgtatttttaaatgaggatatacagtatgtacctGAGGGTTTAAGCAGATTAAGCAGGTCAAATTAAAGCCCACAATATGAACAAGTGATGAAGGAGAAGCTAataacacagcagcagcagcagcagcactcagAACCACAGCactgaggacagatctgcacatcaAAATACCAAactctgcaactacaggaacacacactcacacacacacacacacacacacaccggaaaacatattcataaacaTTTTTCAAGCTTTTAACACATATTATTTGCTGTCTCAAGTGCCTTGATTATAAGTGAAAATTCTTGAATGATGTACATGAATAAGGAAGTACACactataaaacaatattataattaaaactATTAAGTTCAATGTTTCCAGTGTTTTACCAATATTCCCCAACAAGACAATCACTTTCAGATCCATGCATTAGAAATGTGATGATGAACTTAATAAAAGAATTATCTGGAGTAA

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237299.3 True 1682 mRNA 0.46 7 25294253 25333929

Neighbor

gene id symbol gene type direction distance location
LOC103032189 rpl19,LOC103032189,LOC107084780,LOC107567432,LOC102219718,LOC107670912,LOC107378566,LOC107754295 coding upstream 268359 25022191 ~ 25025894 (+)
LOC103031867 NA coding upstream 273596 25016336 ~ 25020657 (+)
pkmyt1 pkmyt1 coding upstream 286226 24995486 ~ 25008027 (+)
pelo pelo,LOC107653258 coding upstream 428299 24848136 ~ 24865954 (+)
LOC103035674 LOC108411004 coding upstream 507543 24773731 ~ 24786710 (+)
LOC103022410 NA coding downstream 25530 25359459 ~ 25364883 (+)
LOC111192426 NA coding downstream 87396 25421325 ~ 25433217 (+)
LOC103024180 tlk2,LOC108431425 coding downstream 102526 25436455 ~ 25461136 (+)
brca1 NA coding downstream 144607 25478536 ~ 25534478 (+)
G39123 NA non-coding upstream 75947 25218047 ~ 25218306 (+)
G39119 NA non-coding upstream 85257 25208497 ~ 25208996 (+)
G38945 patl2,tceb2,elob,LOC100708306,LOC102795145 non-coding upstream 301275 24945980 ~ 24992978 (+)
G38947 tgfb1i1 non-coding upstream 332068 24959233 ~ 24962185 (+)
G38946 NA non-coding upstream 341277 24948785 ~ 24952976 (+)
G39177 NA non-coding downstream 34850 25368779 ~ 25369315 (+)
G39185 NA non-coding downstream 79722 25413651 ~ 25413994 (+)
G39191 NA non-coding downstream 128837 25462766 ~ 25465369 (+)
G39204 NA non-coding downstream 207856 25541785 ~ 25545529 (+)
G39205 NA non-coding downstream 212185 25546114 ~ 25546488 (+)
G38870 NA other upstream 676801 24616784 ~ 24617452 (+)
G38817 NA other upstream 1319733 23974161 ~ 23974520 (+)
trnar-ccu_27 NA other upstream 1544060 23750121 ~ 23750193 (+)
trnar-ccu_26 NA other upstream 1544162 23750019 ~ 23750091 (+)
trnar-ccu_25 NA other upstream 1544264 23749917 ~ 23749989 (+)
G39179 NA other downstream 41030 25374959 ~ 25375344 (+)

Expression


Co-expression Network