G52379


Basic Information

Item Value
gene id G52379
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2448366 ~ 2451640 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59670
ATATCTTTAATTTCATATTGTTTTATACAAAAACAACAGACGAATCGGCGTTGAATTAATATTTTTTTTTACTATTTATTCTAAAATAGTTATGAAAAACTGCGATACAAACCAGTGTACTGGCTATTCCACTACAAAATGACGGACAAAACCCCGAATTAACAGGGTAATCTTTGGATATGAGGCAGATGTGAGATAATTTGTTCACTATAAAATTTCCAAAAGGTTCACAATAATCACGTAAACAAATAATCTCTATAAATAGTTTCTAAAAGAAAAAATAAACTACTTTGAGATCATTTTTGGTCGCAGCAAAGAAAGCGTCTATGGGTAGCTTATAGACTTGGGAGGCAATTAAGCAACTCTTTATGTATTAATCCAAATTATTTATGTGACGCTGATTATTATGTAGGCCTACATTTAATTTAGTCTAATGGTAGGCTATTTTTAATCAATCACAAGTCATCTGGTACCCAAGGCGCTATCTATGAGCACTTTGTAAACAAAATAAACAATACAGCAATAGATCCTATCCGATGGGAAGTGCTTCTCGTTATCATAGGACAGGACATCAACAGCAACACCATTATAATAACCGTAGTGCACACACAGCGAAGGCCCTCCTACTCCTAAGAAAACTGCCAATGAAAAGTGCAAATGAAAAGCAACAGTAAACCCAAACTTTGCGACATCAGTCTATGAATAATAATAAAACATTAAATATTTACACGCATACGTAAACACTTTAGATATGCTATTTTAAGGACACTCACATAACTTAATTTACTTCATAAATAAAATAAACAAAAATACATGTAGAAGAAAATAAATTAACAAATAAATTAACAACAAGGTTACGATTTGTTCCAGCACATAGATGTAGCCTATACATTTTTTTTCCCCCCAGATGGTTGGTAGCCTATAAAATCCGCTTGATTTATATTAAGATTGTGAAAGATAAATGTTATGTTGTTTCGTTTAGGCCAATGTGATGTATAAAGATCCAGCCCAAGTCAAATCTCTCCACAACAAATTACTGGCACAAATGTGCTTATGATATTGAACGTTGAACAGGATAGCTTTGAATGGTTATCCTAAACTCTTGTTATGGTGTCAAATACAACAATTTTCACTTATTGCAACACGTAAAACATTTTTGGGTAACTCTTTATAATAACCTTCTTCAGGGCTAATTATGTTTGTGATTAGCCTACTGAAACGTTTGAAAACACTGTCTAACAGAATACATTATGACTTCCTTCAGAATGCTGTATAATGCGCTGAAAGTTAGTCTAAACGTCCAAAACGTGGTTAAGATAAGAAATGTAACAGATAGCGAGACGAAGTATTTCTATCTTTGACAGCTTCTTGTCGGGTGGAAGTGTTGGTAGCAGCTTTCTAAGCTCAGCGAATGCTACGTTGAACGCTTCCACTCTGATGCGCTCGCGCGTGGCATGCGCAGAGCGGTACTTCGCAGTCGCGCGCCTCCTCCGTCTCTTCTCCTCTCTAGTGAGCGCGGCTGGCACGAGTGCGCGAGTCTTGCCGTCCTCGGCCTCTAAGGGCTCGTGAGCCACACATTCCACCTTCATGATGTTCAGACATTCCGTGTCCGACTGTGCCCAGGTGAGGTCAGGATCCGTCTGATCGGGGCTCAGCATCATTTTCAGATCCGTTTGATAAAAACTTCAAAAGTGCACTGATTGTTAACTGCCCTCTGTTGACGATGAACAGGACGAGAATCAGTTTATTCCCCAAAATCCCCTTTATCAAATCTGTTTTAGTGTTTCATGTTCATCTGTCCATTGTGCTTTCTGAATTTTTATTCTGGCATGAGCAACAGCATTTCTCAGCCTAATATTTTCCTCGCCACTAATTCCACTTATAACACAGCCGGTATCGTAGATTGTTGTTGTATGATGAAATTTCCGTGAACAGTGTTACAGAATGGATATTATAATAACAGGACCGGTAACGCACGCTCTGAGATGTGTTGCCCTCTGACCCGTGTGCGGATAACAATGGACACGCGTCCTCAGATAAGATCGATGAGATAAGAAAGTGTCGTCTCCGGCTCTCCTCTTTTCTGTTTCCCGTGGATTAGGATAATATTGCTCCAGCCATCCTTACAACCACGCGTGCTTGTCCTCGT

Function

NR:

description
PREDICTED: putative adenosylhomocysteinase 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59670 True 2149 lncRNA 0.46 3 2448366 2451640

Neighbor

gene id symbol gene type direction distance location
CI01000009_02403219_02417215 FAM160A2 coding downstream 31151 2403156 ~ 2417215 (-)
CI01000009_02391182_02393863 NA coding downstream 54503 2390445 ~ 2393863 (-)
CI01000009_02358636_02361913 HPX coding downstream 86417 2358470 ~ 2361949 (-)
CI01000009_02352214_02356619 NA coding downstream 91525 2352214 ~ 2356841 (-)
CI01000009_02327693_02335035 NA coding downstream 113331 2327693 ~ 2335035 (-)
CI01000009_02591882_02593586 RPL8.S, RPL8 coding upstream 140223 2591863 ~ 2593761 (-)
CI01000009_02610459_02610721 NA coding upstream 158620 2610260 ~ 2610721 (-)
CI01000009_02654102_02655554 CASK coding upstream 202462 2654102 ~ 2656438 (-)
CI01000009_02682050_02707583 NA coding upstream 229968 2681608 ~ 2707623 (-)
CI01000009_02786421_02791586 NA coding upstream 334671 2786311 ~ 2792435 (-)
G52378 NA non-coding downstream 20518 2427249 ~ 2427848 (-)
G52330 NA non-coding downstream 46986 2401035 ~ 2401380 (-)
G52328 NA non-coding downstream 47472 2399814 ~ 2400894 (-)
G52371 NA non-coding downstream 59827 2388314 ~ 2388539 (-)
G52342 NA non-coding downstream 232831 2214952 ~ 2215535 (-)
G52440 NA non-coding upstream 61317 2512957 ~ 2513671 (-)
G52409 NA non-coding upstream 112122 2563762 ~ 2566564 (-)
G52406 NA non-coding upstream 122846 2574486 ~ 2578978 (-)
G52469 NA non-coding upstream 359405 2811045 ~ 2811334 (-)
G52478 NA non-coding upstream 371322 2822962 ~ 2823928 (-)
G52098 NA other downstream 1040739 1401932 ~ 1407627 (-)
G52410 NA other upstream 100084 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 432048 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 809563 3261038 ~ 3262843 (-)
G52828 NA other upstream 1765780 4217420 ~ 4231469 (-)
G53515 NA other upstream 3050755 5502395 ~ 5505248 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037259 nhlh2 coding NC_007120.7 CM002893.2 32978302 ~ 32981660 (+)