LOC103039374


Basic Information

Item Value
gene id LOC103039374
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10437323 ~ 10441938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240714.3
TGGCGGGGGCGCTGTTCCCTCGCCGCGGTTCTCCTGCAGGAGTGAAGCGAAGAAGGAGCGGAGCGGCcgcagagctgcaggaggagcagAGCTGCCGGAGaaatgaaagaaattttCTCACAACCCACCTCTCTCAGTTTTAACTGACCTCCACAAACACATCCTAGCTGATATCAAGGGAAATTAATCGTGACGTATGGCATCCAGAAGCGTCGACTCTCTGCAGACCGTCTCTGCTACTCTTCACTCAAACAAACCCagcaaagaaataaagaaaagtgtaGTAAAGAAGAAAACTTACCGCTGTCCAGTGTGTGGGAACAGTTATAAGAAACGAAACTATCTCCATGTGCACatgcgcattcacacaggagagaagccGTATCGCTGCTTGGACTGTGGTAAAGGGTTTGGTGAGAACGGTACCCTCATAAAACAccggcgcattcacacaggagagaaaccgtatcagtgcccAGACTGTGGCAAGAGTTTTAGAGACAATAGTACCGCCAGAAAACACCAGCTCACtcatacaggagagaaaccgcacgagtgctcagagtgtgggaagagctttGCTCTACAGGGTAGTCTCCGACGCcaccaacgcattcacactgggGAGAAACCGTATTGCTGTTCAGATTGTGGAAAGAGCTTTACTGTTCAGAACAATCTCCAACTCCACCAGCGCGtccacacaggagagaaaccgtattactgctcagagtgtgggaagagctttaGAGACGGCACTTTCTTTAAGAAACATCAGCACCTTCACACCGGACAGAAGCCACATGACTGCCCAGAGTGTGGCAAGAGTTTTGCTCTAAAACATGCTTTACAAGCACacaagcgcattcacacaggagagaaaccgtatcagtgcgcAGAATGTGACCAGAGTTTTAGGTATTCCAGCACTTTTAAGAAACACAAGTGCACTATGATGGACACGGATGCAATTATGACGATTGTCATGTAATGGATGAAtgttaccctgcgttcacattGGCAGGCAAGTAGCTGCTTGTGTTGCCCTAAGTATGTCTCCTGTGGGTGTATTAGAGGCTGTTGGCTTGTATACCATGGCCAGATAGCATGCTGGCATAACATAGCAAGCACCCGATTGTGCTATCTGCTGCTTTCTTTCATGCTTTAATTTTCTTCACATTGTTTTTGGccaaatatgcattattacaaaatggaaaaatggcAACAATGAATCGATGTTTAGAACCACACTTGTGGGTATAAAAGTGAAGTACGGTAGGAATCAAATGTTCACAGACCAGAAGCTGGAGACCTCAGAGTATGTGATTGATCCAAAGAATTCGTTTggccaatcgggttagaataTCTGTTCATTGCATCATAATTAATTTGCTTGAAGTTCAGAAAATCTAAATTCAATTTGTTAATTGTCGCTGTGTCACTTGCCACTTGTTACCAAATCGTGACAACCAATCGCCTGCTAGTGTGAACACAGGGTTACAATATTATCTTGTATATTTGTGGATTGCTTAGCACCTGATGTAaggaattattaatatttaaaggaaCATAGATAATGAATTTCCATTTGTTGTGCAACTAGTCTTTGTACAATGGTGTgtttgtaggttttttttttatgtaacaaaTTTACTTGATTTGCTTGTTGAGCCAAACTATAATATAAATGGTGAAGTATAGTAATGTAAactaaatgtattgtaatgtaaacaGACTATATTATCATGAAATTATATTGTAGAACTGCTTCTGTCAGGTCAAGAGCTTACATAGAAATACCCAAGGTATATCTCCTGCAGCAGATTTCAGTCTACACATTAATTCACCCAAACCTTGGGGCAATTTAGCAAAGCCTTCTACGTCTTTTTGGCAAACTTACATGGACACACAACTCCAAGCTCCTGGGATTAACCTGTATTCTAGCAAATCTGTGCATGTTGTTGTTCCAGTGCACAATTTAGGATTTAAACTGCTGGATAAATGATGGTGTGTGTAAACAGGTATATCGCTAGCTAGCTTTGTGTTGGtgcactagctagctaactaactagctagatCCATTTGGTAAAGCTTGCCACTCGTTTTTCTCTTGTCAGCTACAATACAGTAAATGGAATTTGTGACAAAACCAGTGTCTTGCTTTTACAATGTGTCATTGTTTTACAGGCTACAGGTAAATTagggttaatatatatatataaaaaaataagaatacagcAGCCTACTACTGTGATAATAATTAAACTAAtgtgattattactgtgatacaatatttataatatgtattatgaTACATGTACATTATGCATACTGTCAAATTACTGTCAATGTCAAATACATACTGGTTTCTGTACATTTCACAGTGCATTTATTCTTTTTAGGATATCCAGTAAGATCCTGGTGCTTTGGTTGGCCAATAATGCCAGTGTACTCTTTACAGTGAGTGGACTCTAATGACTGTTATGTGTTTACGTGTAAAATCTGGTCCTGCTATTCCCTGCTCTGGACACTAGAGGTCCTCCTTACCAAAAAAACTGACTTGAGGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240714.3 True 2569 mRNA 0.41 2 10437323 10441938

Neighbor

gene id symbol gene type direction distance location
cdc42ep4 NA coding upstream 13078 10385012 ~ 10424245 (+)
LOC103040920 sdk2,sdk2b coding upstream 63982 9829485 ~ 10373341 (+)
LOC103043335 npffr1 coding upstream 1169727 9220731 ~ 9267596 (+)
LOC103022911 LOC108413183 coding upstream 1229639 9177238 ~ 9207684 (+)
LOC103023541 LOC108441018,LOC107709014,LOC107595168 coding upstream 1408168 8994443 ~ 9029155 (+)
trim65 trim65 coding downstream 34452 10476390 ~ 10485798 (+)
foxi2 foxi2 coding downstream 598760 11040698 ~ 11042893 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding downstream 742952 11184890 ~ 11217372 (+)
glrx3 glrx3,LOC107745700 coding downstream 1631425 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 2162019 12603957 ~ 12664928 (+)
G35677 NA non-coding upstream 354235 10081497 ~ 10083088 (+)
G35645 NA non-coding upstream 477456 9959325 ~ 9959867 (+)
G35621 NA non-coding upstream 602607 9833163 ~ 9834716 (+)
G35609 NA non-coding upstream 731021 9706049 ~ 9706302 (+)
G35554 NA non-coding upstream 982506 9454482 ~ 9454817 (+)
G35748 NA non-coding downstream 45177 10487115 ~ 10488053 (+)
G35794 NA non-coding downstream 291840 10733778 ~ 10734007 (+)
G35810 NA non-coding downstream 405949 10847887 ~ 10848371 (+)
G35825 NA non-coding downstream 636934 11078872 ~ 11079443 (+)
LOC103033033 NA non-coding downstream 648354 11090292 ~ 11264386 (+)
LOC103024481 adamts14,LOC103367006 other upstream 1585931 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 1964334 8442132 ~ 8472989 (+)
fasn fasn other upstream 1998458 8386173 ~ 8438865 (+)
G35021 NA other upstream 3533326 6902417 ~ 6903997 (+)
G34931 NA other upstream 3705899 6730954 ~ 6731424 (+)
G35744 mrpl38 other downstream 29442 10471380 ~ 10475783 (+)
dock1 dock1,LOC107740868 other downstream 305699 10747637 ~ 11001805 (+)
G35903 NA other downstream 1359520 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 1669752 12111690 ~ 12566941 (+)
G35967 NA other downstream 1924602 12366540 ~ 12370962 (+)

Expression


Co-expression Network