trim65 (trim65)


Basic Information

Item Value
gene id trim65
gene name trim65
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10476390 ~ 10485798 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240718.3
CGGGCTTGCCATAAACCGGCTCTGGTGCGCCTGCGCGGATTTCCTCCTGTTTAAGAATCGTCTCATACAGTAATTGGAAGCGCTGTGATTTTGGCATGATGGAGGCGCACAACCTCAGCTGTGCCATCTGCTTGGACCGGTTTAAGTACCCGACGACGATCCCCTGTGGCCACACCTTCTGCATGGACTGCATTTCCAAGTACTGGGATCAGCGGGAGAAAGCAGGACCTCAGAGTGCTGAATTTAACTGTCCGGTGTGTAACGAGAAGTTCCCCAGCAGACCCACGCTGAAGCAGAACGTGTCCCTGTCTATGCTGACTGAAGCTACGGCTAACAGTGCTGTGCTGAAAGATGACGGAGCTTCCTGTAGAGGAGACTCAGCCGGATCAGAGCAGCTCTGTGGGCGCCATCAGAAGCCCCTGGTCATGTTCTGCAGGAACgatggcatgtgtgtgtgttgtgcgtgTGCTGTGAACGAGTGCAAAAACCACGACAAGgtactggtggaggaggagaggaagaaccGGGAGGCCGGGCTGAGAAAGAAGGGAATGGAGATGAGGAAGTGCAGAGAGGAGACAGAGCGGAACATTATGGAGCTCAGTGAGAACATCGCTAAAGCCAAGGTGTCGCTGCAGCAGACATCTCAGTGGGTGAATGCGAAGTTTTCACAGCTGCTGAAGGTTCTGGTGGAGAAGCAGGAGCTGACCCAGCGGTTTGTGGATCAGCAGCAGGAGACGGCCCTGTGCCAGGCTGAAGCTCAGCTCGGTGAGCTGCAGGAGAAAGCTCAGCAGCTTCTGGAGCAGGAGGAGCAGATCAGCAGCCTCTGCACTCTCAGTGACTACCAGCTCATACAGGACTCCAGGCTGGTGGAGGTTCCCCAGATGGGCGAAGTTCCTGTAGATGTCAATGTGAACATTCTAGAGAAGCTCAATCCCGTCACAGATGTCCTTTCTCGCGTGTCTAAGCTAGTGTGTGAGGACCTCGACAAAGCTGTATATGCAGTGGTCGGCCACGACAAGGAAGGTTCTCCTCAGGACAAAAGACCGGTGCTTGCTGTGGTTCCTAGTCCTGCCACTCCGTCCTATCCAGCAGGAAAGGAAGGcctaagtgcataCCATTGCTCTCTGACGTTTGACCCTCGGACCGCCAACGCCCACCTCCTCCTCTCCCAGAGCAATCGCCGGGCGGAACACTTGCCCTCCGGCCCGCGACCCGTCCCGGCCCACGAGGCTCGCTTTGACCACACCTGGCAGGTGCTGTGTTTTGAGAACTTCACCCACGGCCGCCACTACTGGGAGCTGGAGGTGTCCAAGCCGTGGGCGTACGTCGGGGTGACGTACCAGGCCATCCCGCGCAAGGAGAAGGGCAAGACGTGCATGCTGGGAATGAACGAGCTGTCATGGAGTCTGCAGCTGGACGAGCGGCAGCTGAGCGCCTGGCACGCCGGCCGCAGGGAGTCAGTGGCAGCGCAGCTGCAGGTTCACACGCAGCCCCTGCGCATCGGCATGCTGCTGGACTACGAGGGCGGGACTCTGACTTATTACGGGGAGGGTCAGGTGCGGCTACACGCCTTTCACTGCGTGTTTTCTCAGGAGCTGTTTCCCGCCTGCTGGATCGGGGAGGGGGTCAGTGTGACTCTCTGCCCGCCGTGAGTCTGAACTGCTGTAGCACCGAAGCACAAAATGCAGAAGATAAAGTCTTAAAAATAAGGGGCTTCAGATGGTTCCCTGAGGGACGTCATAGAAAAGGCCATAGAAAATCCTCACCTTGCACAAATGTTCTGTTCCTGGATCTGATCCTTGTTATCCTTGGTAGGTGTGACACTACATAGCCAATCAATTACATGAGCTGTTCCCATAATTTCCATTGACTTACAAGTCCAGTCCTGGAAACTGGATTTATGGTTCACATTTGGCACTGTGGACTATAGAAGAGCTGTGTTCCTAATGCAagatcttaataataataatttggttcaaaataaaaccaaaactgATTTCTCTACAATACAAGccaaagttttagaacactccCATTTTTCTAGCTTACATTGACAGTTAAGTCTAGTAAATCAACTGAAGTGGAACCTGAAAATACATGTAGAGCATCAGAACTATACCTAGTTGGGAGTGCAGAAACAAAGACAGGAGGAAAGGCAGGTAAAGTCTAGGCTTGGTCACTGGGTTTCAGCTTAAAAAGCTCTCAATCACAGAGTTAAAGAAGTAAAATCAACACAGGTATAAAGACTACACTCCAATTGTTCACTACATGCCCAAAAGTATTATTTCTACCAAAACCAGtgttattaaaaagagtttatcctgcttgtCATTTCTGGTCAAGCATTgctttgaggatttgattgcattcagccacatgAGCAGCATTAGGGAAGTCAAAGAAGCACCAACCAAACTCAGAATtgctggatggagctccattattccagaacacagttccactgctgcaCAGCTCAGAGCTTGGGTTAATAGAAAtagtgtttatctgctccagagagtcctattctattggcagtacttctctgcTGGAACTTCACAAGCTGTGAGTATCATCTTTTGTCAGCaatcagtgcagtttaaagtaaattagtcaaatgcagcattctttagaaaggatgtccacaaacatttggacatatagtgtactGTTCCTTCTGTTCCAGTGGTTTTGCTTCTGAAACCACCGTCATCATCGAACTGGAATCTTTGTGTATCCTATTTTGTCTGTTAGTTTCACTGGTTTATAATGATTGAGGGCAGTTAAAGTTGTACAgtagaaaatgtattaatgtgtatttttttctgagccaaaatatttgtataaatattcTTCAATCTGTCGTATGTAATTAGAACTGTAAAGAGAATCaaggtatttttaaaaatgtaaagttgtTTTAGACCTAAAAACATGTATTGTTACACTTCTGGGAGCAAAGTTCACaataatatagtgtatgtaataTGGGTCACTAGAAGCTGTTTACACCTTGCAATACTGTGCGTTTTTCTTATTCATAttcagatatttatatatatatatatatatatattcatatttgtgtgtatatatatatatataaataacatggAAGTAGTAATGTGTCCCATGGCCTATGGAAACTGACAGTTTTTTTCTCATGGTACGTTCTAGCCAAACGCCGCCAGTTACAGTTATTGCCTACATGATGCTTATCAACTAACACAGGTAGGGACTGATAAACTAATAGGAACTCATTATAAAGTTATTTCTTACTAGTTCCTATTAGATTTCCCATCAAGCTGGAATGGCAGATGtgattaaaggattttaaaagaCAGGTGGAAGCTGATGATTCACAGGTGAAGGTGACGTAGCATTAAAGTCTCACTCCATTTCAGAAAAGACGTAGGTCAGTGCAAGGTGTAAACAGCCTTGTTGGGCTAAACGTAATCTAGGATTAGGAAACTGGCctgtaatgtgtaatgtaaaCACAGCCTTTGGTTTATTAAAAGCAGAGAAATGAAGAGACTGCAGGGCGGTGGATTCACTGTTGAGAAGCCCAGCTCTGATAGCTGTAGTGCTGAAGTATACTGGGATCTGAGCCAGTGGACAATGCTCTGGTCCTGGAGTCGCCAAAATCTAAAGActttcacttttgagagacaaaTGGAGGATTTGTACTGCAGACTCCAGAACCTTCAGGATCATGATGTTGAGGATTACAGTTCAGAAGCTGCATGATATGAGCATCATCTTACTTTCTGAACCATCCTATGATGTTTTCAAGCACAAGACTGTTGATAAAGTGAAATGCTCTAATGTCTGCTGTTGTGAAAATGTTGAGacattgcactttttttttctgttgtttttagtcCCTTCTCCAAAACTCAAAGGGAAATGTACTTGTAAGACTTGTATTGCTGTGTATTTGCCCTTTATTTTTGGCATAAGCCttgtatattgtgttttatgACTGGTACCGTGTGACAGATTTATGTTTGAACTGtattttaagataatttaagACCACAAAACTAGTTTTGCAAGAAACCTCTGAAGGGCttcataatttattaaaattaatctgGTATTCTAGA

Function

symbol description
trim65 Predicted to enable zinc ion binding activity. Orthologous to human TRIM65 (tripartite motif containing 65).

NR:

description
tripartite motif-containing protein 65-like

GO: NA

KEGG:

id description
K12031 TRIM65; tripartite motif-containing protein 65

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240718.3 True 4106 mRNA 0.45 7 10476390 10485798

Neighbor

gene id symbol gene type direction distance location
LOC103039374 NA coding upstream 34452 10437323 ~ 10441938 (+)
cdc42ep4 NA coding upstream 52145 10385012 ~ 10424245 (+)
LOC103040920 sdk2,sdk2b coding upstream 103049 9829485 ~ 10373341 (+)
LOC103043335 npffr1 coding upstream 1208794 9220731 ~ 9267596 (+)
LOC103022911 LOC108413183 coding upstream 1268706 9177238 ~ 9207684 (+)
foxi2 foxi2 coding downstream 554900 11040698 ~ 11042893 (+)
ptpre ptpre,LOC103359937,LOC107387775 coding downstream 699092 11184890 ~ 11217372 (+)
glrx3 glrx3,LOC107745700 coding downstream 1587565 12073363 ~ 12094731 (+)
jakmip3 jakmip3 coding downstream 2118159 12603957 ~ 12664928 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding downstream 2185747 12671545 ~ 12692068 (+)
G35677 NA non-coding upstream 393302 10081497 ~ 10083088 (+)
G35645 NA non-coding upstream 516523 9959325 ~ 9959867 (+)
G35621 NA non-coding upstream 641674 9833163 ~ 9834716 (+)
G35609 NA non-coding upstream 770088 9706049 ~ 9706302 (+)
G35554 NA non-coding upstream 1021573 9454482 ~ 9454817 (+)
G35748 NA non-coding downstream 1317 10487115 ~ 10488053 (+)
G35794 NA non-coding downstream 247980 10733778 ~ 10734007 (+)
G35810 NA non-coding downstream 362089 10847887 ~ 10848371 (+)
G35825 NA non-coding downstream 593074 11078872 ~ 11079443 (+)
LOC103033033 NA non-coding downstream 604494 11090292 ~ 11264386 (+)
G35744 mrpl38 other upstream 607 10471380 ~ 10475783 (+)
LOC103024481 adamts14,LOC103367006 other upstream 1624998 8719354 ~ 8851392 (+)
LOC103037241 wac,waca,LOC107738973,LOC107665881,LOC107749376 other upstream 2003401 8442132 ~ 8472989 (+)
fasn fasn other upstream 2037525 8386173 ~ 8438865 (+)
G35021 NA other upstream 3572393 6902417 ~ 6903997 (+)
dock1 dock1,LOC107740868 other downstream 261839 10747637 ~ 11001805 (+)
G35903 NA other downstream 1315660 11801458 ~ 11802204 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other downstream 1625892 12111690 ~ 12566941 (+)
G35967 NA other downstream 1880742 12366540 ~ 12370962 (+)
G35995 NA other downstream 2216507 12702305 ~ 12703056 (+)

Expression


Co-expression Network