pagr1 (pagr1,LOC107708911)


Basic Information

Item Value
gene id pagr1
gene name pagr1,LOC107708911
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17796834 ~ 17802617 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248683.3
TGCTGCTCTCTCCTCCCGTACTGAATGTAGGCGGCGGGAGTCTCGTTAGGAGATAAACACTGGCCTCTGTTCATGAATATCAGCAATGAAACTCACATTATCTGCAGGTTATCGCTGAATTAcagctgtgttttatttaatttcaactTTTACACAAATACTGGAGTGGTTTAAGCTGTGCTGCATGTAATCTCGGTGCTGTAGCCGCATTTACTCGGACTTAATGCTCTAATCTTTTGATACATCCGTTAGCCTGTGAGCTAACTTCTCATCTGTCAGGATGCAGGCGGTGGAGGAAACTGAGTCCTCCCTCTCTGACAGAGTTGAGCAGATAGCTGTGAGGGAGGATGACAAATCAAAagaagaggagagtgagaaagatgGAGGTGAACAGACAACACAGACTACTGAAGAGACCAAGGATGATGAGGGGAAAGATGAGTTGAAAGACAAGGAGACAGAAGAGCAGAAAGAGGGGACGAAGGCAGACGACGAGATGAATGGAGGCGTGCAGGCTCCtgcagaggaggaagaagattGGGAAATTCCATACAGCGATGAGGAGATGGAGGACCCAAAGACCTGGATGCCTCAGCCACAGGAGATAAAGCACCTGTATGAGTTGCTGGCTAAAGGAGAAGAACTGGAGCTGAAGTGGGTTCCTCTCCCCCGAAGACCACCCACTCCCCCACGCACCCCTTCACCGGAGAGAGACGGTGAAGACTCTCAGGAGGCCAAGGAGGACGACAGCCAGTGCAAAGCTCCGTCACCGACTGAGTTTGACTTTGATGAAGAGCAAACCATGGCGACTCCTAGGAACTCCTTCCTCAGCCGACGCAGGACGCCAGGCTCGTCCGCCCGCTCCTCAGTGAAGCGTGAGGCCCGGCTGGACAAGGTTCTCTCCGACATGAAGCGGCACAGGAAGATCGAGGAGCACATCCTCAGAACAGGTCGTGATCTTTTCAAAAGTGAAAAACCGCCCCCCAGGCCGCCCCCTCAGGAGCGCTTATCTCCCAACAGCCAGCgggagcgagagaaagagagagagagggacagcgACCCCAGCACTGTCTTCAGCCCCAGGCAGAGGAGATACTGAAGAACCTCCCACACAAACTGTTCAGCACGGACCCTCATTTTTCAGGAGGGCTGtgatttaacttaatttttaataacGGGTTTAATGTTCATGacgtttctttaaaaaaacaaacaaaaaaaaaacaatcagctgtatatgcgtatgtgtgtggctttgagtgagtgagaggtcGAGTATGTGAAAAAGAGAATTTTTTTAACTTGAATAAATGTATGTTCAGATGGTAGCTGTTTGATTTTAGGAAATGTATTGTTTGAAACTAAATGAGCGATATAAAATACATCATATTGTCGCCGTcaaaaaagctgtttattttttttattatctggcAGCTGTTATTTATATTGTCAGAATTTCATGAGAAATGAACCAAtgtaaatgctccaaaatgattgGAAATAAAGgtcttttacattgactttc

Function

symbol description
pagr1 Predicted to enable estrogen receptor binding activity. Acts upstream of or within brain development. Predicted to be part of MLL3/4 complex. Is expressed in brain. Orthologous to human PAGR1 (PAXIP1 associated glutamate rich protein 1).

NR:

description
PAXIP1-associated glutamate-rich protein 1 isoform X1

GO: NA

KEGG:

id description
K14973 PA1; PAXIP1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248683.3 True 1525 mRNA 0.47 5 17796834 17802617

Neighbor

gene id symbol gene type direction distance location
g6pc3 NA coding upstream 262557 17521497 ~ 17534277 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding upstream 305770 17483919 ~ 17491064 (+)
LOC111188179 NA coding upstream 372640 17423685 ~ 17424194 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 386900 17397153 ~ 17409934 (+)
dmc1 dmc1 coding upstream 400777 17391730 ~ 17396057 (+)
cabp5 cabp5a,LOC108425940,LOC107708978,LOC107562016,LOC107693687,LOC105909107 coding downstream 75978 17878595 ~ 17888249 (+)
nif3l1 nif3l1 coding downstream 94173 17896790 ~ 17903709 (+)
LOC103030008 NA coding downstream 114247 17916864 ~ 17924970 (+)
LOC103029386 NA coding downstream 226481 18029098 ~ 18039806 (+)
mapk7 NA coding downstream 325823 18128440 ~ 18138878 (+)
G37108 vps25 non-coding upstream 3033 17792026 ~ 17793801 (+)
G37097 NA non-coding upstream 82743 17713885 ~ 17714091 (+)
G37096 NA non-coding upstream 83147 17713461 ~ 17713687 (+)
G37092 NA non-coding upstream 86998 17684712 ~ 17709836 (+)
G37089 NA non-coding upstream 98182 17693790 ~ 17698652 (+)
G37120 maz non-coding downstream 19794 17822411 ~ 17828668 (+)
G37137 NA non-coding downstream 90045 17892662 ~ 17892962 (+)
G37141 NA non-coding downstream 110205 17912822 ~ 17913085 (+)
G37151 eif3c non-coding downstream 139231 17941848 ~ 17949188 (+)
G37153 NA non-coding downstream 141041 17943658 ~ 17944500 (+)
G37099 NA other upstream 77458 17718231 ~ 17719376 (+)
G37098 NA other upstream 80842 17715129 ~ 17715992 (+)
LOC103045739 LOC103045739 other upstream 88237 17705679 ~ 17708597 (+)
tnrc6b tnrc6b other upstream 455942 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 514603 17250981 ~ 17282231 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 55300 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 149963 17952580 ~ 17960304 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other downstream 159323 17961940 ~ 17970999 (+)
LOC103046566 NA other downstream 261366 18063983 ~ 18099979 (+)
G37404 NA other downstream 304947 18107564 ~ 18113926 (+)

Expression


Co-expression Network