ppp4c (ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278)


Basic Information

Item Value
gene id ppp4c
gene name ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17961930 ~ 17971020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248697.3
GGGTTGTCGGCCTTTAggcggcgagagagagagagggctggTGATGTAAACTGGATGGCAGGCGGAGGGAGGCGCTGAAAGCCGGTAGGACGACGAGCCGGTGGAGCAAAGAGGGGAAAAAACGGATCTCACTTAAACTTAATTCGATTTAACTTGAACCCACTGAACGTGAGATCGAGGCGGATCAGGTGGCTTCGCTCGCATTCGTCCTGCCCTCTCTTAGCTCCTTTACgtagtgtgtgtctgtctgtctgtctatttgtctgtgTGCTGGCATTGTCTGTCTGTGAGGTGCGCTGTGAGAGGCCGTGTGGGTTGCAGGAGGCTGTGCACGGTGACGCGAGTGTGTGGGGAGACACAGGCAGACTCTGTTTGGGCCGTTCACTATGGGTGACATCAGCGATCTGGACAGACAGATTGACCAGCTGAGGAGGTGTGAGCTCATCAAGGAGAATGAGGTCAAAGCCTTGTGTGCCAAAGCCAGagAGATTCTAGTAGAGGAGAGCAACGTACAGAGAGTGGATTCTCCAGTTACAGTGTGTGGTGACATCCACGGACAGTTTTATGACCTGAAGGAGTTATTCAGAGTGGGTGGTGACGTTCCAGAAACAAACTACCTCTTTATGGGAGACTTTGTGGACAGAggtttttacagtgtggagACTTTCCTCTTGCTTCTGGCCCTTAAGGTTCGCTACCCAGACAGAATCACGCTGATCCGGGGGAACCACGAATCCAGGCAGATCACACAAGTCTACGGCTTCTACGACGAGTGTTTGAGGAAATACGGCTCTGTTACAGTGTGGAGGTACTGCACGGAAATCTTCGACTATCTTTCCCTCTCAGCCATCATCGACGGCAAGATTTTCTGTGTGCACGGTGGCCTCTCGCCTTCCATCCAGACTCTAGACCAGATCAGAACCATCGACAGGAAGCAAGAAGTACCGCATGATGGACCAATGTGTGACTTATTGTGGTCTGACCCTGAAGATACTACAGGCTGGGGAGTTAGCCCGAGAGGAGCAGGATATCTGTTCGGCAGTGACGTTGTGGCCCAGTTCAACGCAGCCAATGACATCGACATGATCTGCAGAGCCCACCAGCTTGTAATGGAAGGCTACAAGTGGCACTTTAATGAGACTGTGCTTACTGTGTGGTCTGCTCCTAACTACTGCTACAGGTGTGGTAATGTGGCGGCCATCTTGGAGCTGGATGAGCACCTGCAGAAGGAATTTATCATATTTGAAGCTGCTCCACAGGAAACTCGAGGCATTCCCTCCAAAAAGCCAGTGGCTGACTACTTTCTGTGAGGCTGCCGTgactttaggattttttttctgcaggaaGTGGAGTCCTGTGTCTACTCGTATTTCTATATCTATCCGCCCTTTCCCTGCCCAACTGTCTTAActgtgcttattttttttattctctatcATTACAATCTTTTCTATTTACTTTTTGTCCTTTATGAACATCTACCTTCAgcacattctctttctctttgccaGAAACTCTCTCTATTACCTGGACTTCTTTTGCCATacagacacaccaacacacacacacacacacacacacgtgtgcacTCTTTCACACAGACATGGCATTCTAGTCTCTTGTGCTGCTGTGAAGTTTCCGCTCTCACAAGTATGCCGTTAGCTGTAGGCAACTCTGTTTCTAACTAATGTGAATGGCACTACGGAGAGTTGAGGCAAAGACTCAAAGATTCAGATTTGGGAGTTATATGcattactcattttttttattgtatattcttTCCATTCTATTCTCTTATGTTTTAAACGTGTAGGAACGCGCAAGTGACCATTTCTGCTCTCTGTTCTAGATTATGCATCTTTTTACCCCCAGTCATAGTCTTACAGATTTTGACTTTTGTGAAGGAATTGCTGCAGCAATTTACAAACGTACACTGGAAAGAATCGGAACACAACACACAGAACCAACCTGTTTTTAGACatgctttattttctttctctttttttttttctctgactgTTCTCTCTATAGGTctaaatgttgatttttattattatttgtgacAATAAACTGTACTTTTGTATGAACATAA

Function

symbol description
ppp4cb Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Acts upstream of or within determination of ventral identity and positive regulation of BMP signaling pathway. Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in blastoderm; fertilized egg; and head. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit).
ppp4c Enables protein serine/threonine phosphatase activity. Involved in regulation of double-strand break repair via homologous recombination. Located in cytosol; nucleoplasm; and plasma membrane.

NR:

description
serine/threonine-protein phosphatase 4 catalytic subunit

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0007420 brain development biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248697.3 True 2092 mRNA 0.46 9 17961930 17971020

Neighbor

gene id symbol gene type direction distance location
LOC103023166 LOC108425993 coding downstream 1639 17941850 ~ 17960291 (-)
prodh2 prodh2,zgc:92040 coding downstream 22845 17929307 ~ 17939085 (-)
LOC103022355 NA coding downstream 43133 17904204 ~ 17918797 (-)
taok2 taok2b,LOC107693686,LOC108273910,LOC107562015,LOC107708977,LOC107571768 coding downstream 89776 17839427 ~ 17872154 (-)
maz maz coding downstream 125024 17822758 ~ 17836906 (-)
LOC103023915 NA coding upstream 1568 17972588 ~ 17986489 (-)
LOC103046263 NA coding upstream 21047 17992067 ~ 18015094 (-)
aldoa aldoa,aldoab,LOC101465268,LOC107720037 coding upstream 72022 18043042 ~ 18056729 (-)
LOC103046869 NA coding upstream 129546 18100566 ~ 18117853 (-)
LOC103029702 LOC108441164,LOC108413442 coding upstream 152001 18123021 ~ 18126382 (-)
G37333 LOC103045739 non-coding downstream 253325 17705734 ~ 17708605 (-)
G37309 NA non-coding downstream 406008 17553572 ~ 17555922 (-)
G37298 tmem101,LOC107720276 non-coding downstream 467515 17488885 ~ 17494415 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 571509 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 624608 17335591 ~ 17337322 (-)
G37443 NA non-coding upstream 155514 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 156234 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 166929 18137949 ~ 18139122 (-)
G37450 NA non-coding upstream 169772 18140792 ~ 18141076 (-)
G37451 NA non-coding upstream 170987 18142007 ~ 18142377 (-)
vps25 vps25 other downstream 165942 17789951 ~ 17795988 (-)
cntd1 NA other downstream 256907 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 272546 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 485052 17473910 ~ 17476878 (-)
G37290 NA other downstream 495906 17432972 ~ 17466024 (-)
LOC103047479 LOC108441156 other upstream 311470 18282490 ~ 18317957 (-)
G37603 NA other upstream 601671 18572691 ~ 18573176 (-)
G37616 NA other upstream 662558 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1573205 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1847248 19818268 ~ 19825652 (-)

Expression


Co-expression Network