LOC103029702 (LOC108441164,LOC108413442)


Basic Information

Item Value
gene id LOC103029702
gene name LOC108441164,LOC108413442
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18123021 ~ 18126382 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248722.3
AATCAGAGCGCTTCTCTCAGTTCCTCCACGTTGCAGAAGTTTTTTATTGACTCGGTAGAACTGTGCTGTAGAGTCAGTGCGGTCCGGGCTGGATCTAAAGGCTGTTTCTCTGATATTACAGGTTTTTACCGCGGGTTTTAGAGTCGCTATGGCGCCGGGTGGAGCTCCTGCTGGGGTGCCGGGCTGGGAGCGGGCTGCCCGGGTCCTGCTCTGCTCTTTAGGGCTGCTTCTCTCGGTCTACGCGCTCCACGTCGAGCTTTCCAAGGAGCACGACCCCAAATACAGAGCCATGTGTGACCTGGCGGAGTCTGTGAGCTGCTCCAAGGTCTTCACCTCCAGGTGGGGTCGTGGATTTGGGCTTGTCCAGATAGTCACTGGTGAAGACAGCATTCTAAACCAACCCAACAGTCTGCTGGGCATCGTTTTCTACAGTCTGCAGCTCGGCCTGGGTCAGATGTTGTCCGGTTCAGCAGCTCACGCGCTGGTGATAATGTCCTGGGTGTCTGTAGCCGGCTCCATTTACCTGGCTTCAATTTTGGTCTTTATCCTGGGAGACTTCTGCGTGGTCTGCGTCTCAACGTACATCGTCAACTTTGCTCTCCTGTACACCAACCTGAAGAGACAGACGGGGCTCATgcacaaactacaaaaaaacaagactggCTGAGGAgagtgaagagtgtgtgtgtgagtgtgagaggaaAAGGTAGAGAAATAGAGACACCTCTTTTAAAAGGACCTATATGTGGGTTTACTGAGGCGGTGTCCCAAACCACacctttagtttttttgtatgcagatcattttataatatttataatacattttacatttataacagGACATTTCGTTATACACAATTTAGATTAGAGCAGTGTGTAGTTTGGGACACAACCTCAGGCCCTAGTTTACAAAAACTAGTCTATGTACTTACACtaccaaaagtttgtggacttACCTTCCAGTTAATGCATTCAGCTGCTCTAAAATTGCATCAATTGCTGATATAGATGTGCAAatgtgcacacacagcttgtcctAGACCCTGTagaaaagtattgccaatagaataggactctctggagcagataattCTGACCTATTGAACTATGCCTTATGCAAGATGTGGGATAGAGGGGAATAAATCCCCAAGCACTGAGCTTTttagcagtggaactgtgttctctgcaatggtggtgctccattcagtacttttgggatgagctggataGTTGGTCATCCCATGTTCTGTCCTCACTTATGCTCcggtgtcccagtacttttgttcTAACAGGAAACTTACATCACTTTTTAGCTAACAGCAGTTTAGACGCATCCAGTGAGACCCAATGACTTATTTAGTGGGAAATGCTGGAAATAGACAAGATTAACAATTATGAAGCAGTGTTttgaataaatatgaattattgCTGTTGATTTGCTGCTGTATTGGGACCCGATTAATAAGCTCTGCCGTGGCATTAATGTTTATGTCCCTTACAATTATATCAGACTGTTACAAGCTCaatcagtgttaattttgactgTTTTGgatgttttaattaataaagactTTATACACCTGAAA

Function

NR:

description
PREDICTED: vitamin K epoxide reductase complex subunit 1-like protein 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG:

id description
K05357 VKORC1; vitamin-K-epoxide reductase (warfarin-sensitive)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248722.3 True 1588 mRNA 0.45 3 18123021 18126382

Neighbor

gene id symbol gene type direction distance location
LOC103046869 NA coding downstream 5168 18100566 ~ 18117853 (-)
aldoa aldoa,aldoab,LOC101465268,LOC107720037 coding downstream 66292 18043042 ~ 18056729 (-)
LOC103046263 NA coding downstream 107927 17992067 ~ 18015094 (-)
LOC103023915 NA coding downstream 136532 17972588 ~ 17986489 (-)
ppp4c ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding downstream 152001 17961930 ~ 17971020 (-)
LOC111192381 NA coding upstream 16435 18142817 ~ 18160060 (-)
LOC111192382 NA coding upstream 94489 18220871 ~ 18232563 (-)
LOC111192383 NA coding upstream 108756 18235138 ~ 18241122 (-)
LOC103031189 NA coding upstream 116537 18242919 ~ 18253834 (-)
LOC103031500 LOC108441168 coding upstream 144000 18270382 ~ 18278701 (-)
G37333 LOC103045739 non-coding downstream 414416 17705734 ~ 17708605 (-)
G37309 NA non-coding downstream 567099 17553572 ~ 17555922 (-)
G37298 tmem101,LOC107720276 non-coding downstream 628606 17488885 ~ 17494415 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 732600 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 785699 17335591 ~ 17337322 (-)
G37443 NA non-coding upstream 152 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 872 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 11567 18137949 ~ 18139122 (-)
G37450 NA non-coding upstream 14410 18140792 ~ 18141076 (-)
G37451 NA non-coding upstream 15625 18142007 ~ 18142377 (-)
vps25 vps25 other downstream 327033 17789951 ~ 17795988 (-)
cntd1 NA other downstream 417998 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 433637 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 646143 17473910 ~ 17476878 (-)
G37290 NA other downstream 656997 17432972 ~ 17466024 (-)
LOC103047479 LOC108441156 other upstream 156108 18282490 ~ 18317957 (-)
G37603 NA other upstream 446309 18572691 ~ 18573176 (-)
G37616 NA other upstream 507196 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1417843 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1691886 19818268 ~ 19825652 (-)

Expression


Co-expression Network