LOC103031500 (LOC108441168)


Basic Information

Item Value
gene id LOC103031500
gene name LOC108441168
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18270382 ~ 18278701 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248728.3
gtgactatgCGGCTGGTCTATAGTGGTCAGTCTCcattctctcactccctctagAAGAGCCAAATAAGCAGGAGACCCACAGTCAGCCCAACTTAACCAGCAGGTTCTTCTCTTCTTGAGTTCTTCTCCTCCTTTGTGAGGAATCTTTGCCTTTTGCCTTGGGCTGCTGCTGGGTGGAGACTTTATGACTGCAGTGAAATAGCTCACTCTAATCTGAAAGGTTCTGGTTCGTCTGATTGTTCTTCTGAGAGGAACTGGAAGGTCTGAGAGATGGCGGCACGGCGTTTCGGGCCTGTGGTTCTGCTGCTGGTTCTGCTGAGTGCGGGAGCGTGGATGGTTCaggctgaggaagaggaggaggaggaccgTGCAGACGAAGGGCAGCTGGAAAGCCTGGGCGGTGGAGATGTGAGTGATGAAGAAGGAGCGGAAGATAACCTAGAGGGAGAAGCTGAAGACACTGATGAAAATGAAGACCATGAAGAAGGAGAGGAAAACGAGGGGGAGAAGGGTGaggctgaagaagaagaagaagctgaggaagaagaggaggtgGAGCTAACTGAGGTtgatgaggaggaagaggaagaagaagatacTGCACTTGATCAAGAGGACCAAGAGGACGATGAGGAGGAAGACGAGGAGAACACATCAAATGAAGAAGCTGGAGATGTAGATTCTGAAGAGGAAGGAGAACAAGCagaagaggaagatgatgatgatgataatgatcaAGAACATAACGAGGAAGATGACAATGATAAAGATGAGGATGAATCTGAAGCTGCTGGAGAAGATTCTGAGGAGGaagatggtgatggtgatgaggaTGAGGCTGGAGCTGATGGAGACCAtaatgaggaggaggagaaggaggaggacaATGAGGATGAGGCAGAAGCAGCTGAAGAACAtactgaggaagaggaggaggatgaggttggagctggagctgctgatgaagaagaagaagaagagggtgAAGATAAAAGAGCAGCAGATGAAGTAGTTGAGGAAAAGGCTGAAGACGTCAGGGcagcagaggaagaggaggagactGCATCAACACATGGAGCTGAAGAATATCACTCTGGATCTCTGTGTAGCCTCTGCTCCATCTGTGAGAACTGTGGAAGCTGTGATCAGTGTCCGTGTGAGGAGGGAGACTCATCAGCACACTGTCAGCACTGTGAGcaatgctcctaCTGTTACATCTGTCCTGTTATCTGTGAGACAGTCTGTGAACCAGGTGGTCTTGTGGATGTTCTGTCTGGAACTTTTTATCAGACTGTTGCCTCATACCTCTGAGTACCTTTGACTCCAGCGCCATCCTGTGGAGAAGAGCAGAAGTACAGCTCAGCTCAGGGTTCTGTATCGCGTGTTAGAGGATGAACAGATTCCCCGGTTTagaacagatacagatacagatacaggactGGGGAAACAACATGGCCCTTCTTCATCTGTACAGCTGAGGACCGGACACCACGGGGCCTGATGTTTACCATGGCACAAACAACTACAACACAATATGGCAGCAGGAATTATCAGTTGTATATTGTAGAGATATATTTATGAAATGAATTATAAatgtgtcatttttttgttctggtcattaaaaaactctgttttaatgaataattctTATTCATCTGGTTCCAGTACAAATATATTTCCAGTGGGGGATGTATTTGCACTGGATGTGAATTTCTAACATCTAACAGCATTTCCAAAATAAACCAATTTCACATGAAAA

Function

NR:

description
PREDICTED: spore wall protein 2-like

GO: NA

KEGG:

id description
K23450 HRC; sarcoplasmic reticulum histidine-rich calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248728.3 True 1759 mRNA 0.47 6 18270382 18278701

Neighbor

gene id symbol gene type direction distance location
LOC103031189 NA coding downstream 16548 18242919 ~ 18253834 (-)
LOC111192383 NA coding downstream 29260 18235138 ~ 18241122 (-)
LOC111192382 NA coding downstream 37819 18220871 ~ 18232563 (-)
LOC111192381 NA coding downstream 110322 18142817 ~ 18160060 (-)
LOC103029702 LOC108441164,LOC108413442 coding downstream 144000 18123021 ~ 18126382 (-)
LOC103032028 NA coding upstream 69796 18348497 ~ 18358860 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding upstream 81871 18360572 ~ 18384405 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding upstream 109977 18388678 ~ 18409918 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding upstream 174245 18452946 ~ 18498356 (-)
LOC111192385 NA coding upstream 196286 18474987 ~ 18477121 (-)
G37459 NA non-coding downstream 80938 18188473 ~ 18189444 (-)
G37458 NA non-coding downstream 82374 18187049 ~ 18188008 (-)
G37457 NA non-coding downstream 83471 18186368 ~ 18186911 (-)
G37456 NA non-coding downstream 84092 18185594 ~ 18186290 (-)
G37455 NA non-coding downstream 99028 18171142 ~ 18171354 (-)
G37565 NA non-coding upstream 131820 18410521 ~ 18449197 (-)
LOC103033820 NA non-coding upstream 132646 18411347 ~ 18418294 (-)
LOC103035005 NA non-coding upstream 253915 18532616 ~ 18534771 (-)
G37596 LOC108435052 non-coding upstream 268924 18547625 ~ 18547908 (-)
G37597 scn4a non-coding upstream 269382 18548083 ~ 18550231 (-)
vps25 vps25 other downstream 474394 17789951 ~ 17795988 (-)
cntd1 NA other downstream 565359 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 580998 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 793504 17473910 ~ 17476878 (-)
G37290 NA other downstream 804358 17432972 ~ 17466024 (-)
LOC103047479 LOC108441156 other upstream 3789 18282490 ~ 18317957 (-)
G37603 NA other upstream 293990 18572691 ~ 18573176 (-)
G37616 NA other upstream 354877 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1265524 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1539567 19818268 ~ 19825652 (-)

Expression


Co-expression Network