LOC103032028


Basic Information

Item Value
gene id LOC103032028
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18348497 ~ 18358860 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248729.2
gaagtgctctcttgcttatttccaaagctgtattcgTTTCCGGTCTTACTAgtgcacttgtgtgtgtgtgtgtgtgtgtgtgtagggaacTGGGAGCTATTTGGGACGTGCCCGAAGTCGTAGAAGGGGGCGCGGCTAATGATGCAATGTCTGGATTCGGGGCGTGGCCTCCGCGGAATAATTATGAAGGAAGGACGGCGTGGGCGTGGTAAACAGTCGATTTACCGCTGTATGGGCGTGGCTTTATGTGGGTGGGAGGAGCTGGGTAAAAGAGGGTGACGTCGAAATGGGAAAACGAAACTGATGTGGTGGGATTTCCAGAGAAAAGCTGTAGTGCTGAGTAGAGATATCTTGCTATAAAAACAGCAGTAGCAGCTGTTAGCAGTCGGTTAGCGTCTTCAACACAGCGGAGAGAGCATTTTTAACGATTTAAGCACAGATATTGAGCATCGATGGCCCAAAACAAGCCGCTGTTCATCCCGTGGCTGCGGCAGCAGATCGACAGCGCTCTGTACCCCGGAGTGAACTGGCTCAACCCCGAGCGCACGCTCTTCACCGTCCCCTGGAAACACGCTCTGAGACAGGACTCCAACAGCGACGATGTGCGAATATTCAAGgCCTGGGCCAGAACGAGTGTGAATTCTGGAGAGATGATCCCAGGTGATGCCTCGGTGTGGAAGAGGAACTTCCGCAGTGCTCTCAGAGCCAGAGGCTTTAAGATGCATCAGGACAACAAGAACGACACGGCCAACCCTCACAAGATCTTTAAGTGGCCAGAGGACGGACAGTCTGGGGGAGACTCCAGGGAAAGTTCACAAGATTATGATGGGAATTTTCCTCTAGATGCTCTGGATCTGGATAATGAAATTTTGTTTCGAGacGGAGCCCAAGCACACCAGATTCTGGAGGAGTGTCTTCAGGCCCTGAATATTGCCCAACCTGAGCAAGAGTCTGTAGGTGTGGTGGATCCGTATCTGCTGGGAGGGTCAGCAGGGGCAGATCTGTACTCGGCTGCAGCTCCTGCAGCGTCCTGTCTGCTGAACAGTCCCGTCAGTGAGGTGTTCTCTGATCAGGCTGTTGGTGGTTTGGGACACATCTCTCCTGCTGAAGCCTCTGCAGCTCTCGGACAGTTTTCTCCACTGGAGGGAGCTTTCACAGGCACACAAGACCCACTTCCTGTTCAGGACACTGCTAATGACTCAGGTATCAACAACTTTCCAACCCATTATAATGTGAGCGTTTACTACAGAGGGAGCAAAGTGTTGGAGCAGCTGGTGGAGAATGAGACTGGATTCAGGATTATGTTCAGGAATGACCTCGGCCTAATGACAGACACACTGCCGGTTATAAGACTGCCTGACACTGACTCTATCCTGGACCAGACCCAGGCCAGTTCAACCAGGGATATCCTGGTTAATCTGGGGGGTCTGGAGGTCAGGAAGAAGAGCGGTGTTGTTTTTGGGCATCGCTGGGGAGACAGCCGGGTCTTCTGGGGTCTGTGTAAACATGAGCGCACCGACCAGCCCAGACCTCTCGCTAAAATCCACCCGGAGCCAATTTACCACTTTAAGGATTTCTGCACAGgaaTAATGGACTTTATGCATTACAAAGGATCGTCTCCTTCATACACTCTGTATTTCTTTCTGGGCCAGAATTGGCCTGACCCCAAAAGAAAACCCTGGGAGAAGAAGCTCATTATGGTGGAGgTGGTGCTCACCTCACTGGAGAGGCTGAAGATGATGGCTGTTGAAAACGGAGCTTCTTCACTACAGTCTGATGAGCTGCAGCTTTCGCTGGAGCAGATGATGGAATTGTGCTGAAAATGATGCTGGAATCTGAGAGAAACTGGAGTCATGCACTTTCTGCAGTTTATTAAATCAATGTTTGGCCAGAGTTTGAGTTTACACGTACCTCAGATAGTCTGAATGCCGGTCTGTTATTTAGATTTtcactggagctatgaggctaacaCTGCTAGCACAATTTAAACCCAATataaacacagagttactgcagcagctcagaaaatgatgcttgttcttacagcctacaacacagagaccaagcagttaatcataatatatgatctataaGTTTATCTAAGGTAGcctggggggaatcactacactcTGATGGTTAACAGTGAACACTCTAAACTCTTACAtacattttgtctgatttattcTGTTAGCTTTATTACTTGTTAGCCATGTTAGCCTTGCAGCTTCAGTGCAAAAGAAACTTAACAC
>XM_007248730.3
tgaagtgctctcttgcttatttccaaagctgtattcgTTTCCGGTCTTACTAgtgcacttgtgtgtgtgtgtgtgtgtgtgtgtagggaacTGGGAGCTATTTGGGACGTGCCCGAAGTCGTAGAAGGGGGCGCGGCTAATGATGCAATGTCTGGATTCGGGGCGTGGCCTCCGCGGAATAATTATGAAGGAAGGACGGCGTGGGCGTGGTAAACAGTCGATTTACCGCTGTATGGGCGTGGCTTTATGTGGGTGGGAGGAGCTGGGTAAAAGAGGGTGACGTCGAAATGGGAAAACGAAACTGATGTGGTGGGATTTCCAGAGAAAAGCTGTAGTGCTGAGTAGAGATATCTTGCTATAAAAACAGCAGTAGCAGCTGTTAGCAGTCGGTTAGCGTCTTCAACACAGCGGAGAGAGCATTTTTAACGATTTAAGATATTGAGCATCGATGGCCCAAAACAAGCCGCTGTTCATCCCGTGGCTGCGGCAGCAGATCGACAGCGCTCTGTACCCCGGAGTGAACTGGCTCAACCCCGAGCGCACGCTCTTCACCGTCCCCTGGAAACACGCTCTGAGACAGGACTCCAACAGCGACGATGTGCGAATATTCAAGgCCTGGGCCAGAACGAGTGTGAATTCTGGAGAGATGATCCCAGGTGATGCCTCGGTGTGGAAGAGGAACTTCCGCAGTGCTCTCAGAGCCAGAGGCTTTAAGATGCATCAGGACAACAAGAACGACACGGCCAACCCTCACAAGATCTTTAAGTGGCCAGAGGACGGACAGTCTGGGGGAGACTCCAGGGAAAGTTCACAAGATTATGATGGGAATTTTCCTCTAGATGCTCTGGATCTGGATAATGAAATTTTGTTTCGAGacGGAGCCCAAGCACACCAGATTCTGGAGGAGTGTCTTCAGGCCCTGAATATTGCCCAACCTGAGCAAGAGTCTGTAGGTGTGGTGGATCCGTATCTGCTGGGAGGGTCAGCAGGGGCAGATCTGTACTCGGCTGCAGCTCCTGCAGCGTCCTGTCTGCTGAACAGTCCCGTCAGTGAGGTGTTCTCTGATCAGGCTGTTGGTGGTTTGGGACACATCTCTCCTGCTGAAGCCTCTGCAGCTCTCGGACAGTTTTCTCCACTGGAGGGAGCTTTCACAGGCACACAAGACCCACTTCCTGTTCAGGACACTGCTAATGACTCAGGTATCAACAACTTTCCAACCCATTATAATGTGAGCGTTTACTACAGAGGGAGCAAAGTGTTGGAGCAGCTGGTGGAGAATGAGACTGGATTCAGGATTATGTTCAGGAATGACCTCGGCCTAATGACAGACACACTGCCGGTTATAAGACTGCCTGACACTGACTCTATCCTGGACCAGACCCAGGCCAGTTCAACCAGGGATATCCTGGTTAATCTGGGGGGTCTGGAGGTCAGGAAGAAGAGCGGTGTTGTTTTTGGGCATCGCTGGGGAGACAGCCGGGTCTTCTGGGGTCTGTGTAAACATGAGCGCACCGACCAGCCCAGACCTCTCGCTAAAATCCACCCGGAGCCAATTTACCACTTTAAGGATTTCTGCACAGgaaTAATGGACTTTATGCATTACAAAGGATCGTCTCCTTCATACACTCTGTATTTCTTTCTGGGCCAGAATTGGCCTGACCCCAAAAGAAAACCCTGGGAGAAGAAGCTCATTATGGTGGAGgTGGTGCTCACCTCACTGGAGAGGCTGAAGATGATGGCTGTTGAAAACGGAGCTTCTTCACTACAGTCTGATGAGCTGCAGCTTTCGCTGGAGCAGATGATGGAATTGTGCTGAAAATGATGCTGGAATCTGAGAGAAACTGGAGTCATGCACTTTCTGCAGTTTATTAAATCAATGTTTGGCCAGAGTTTGAGTTTACACGTACCTCAGATAGTCTGAATGCCGGTCTGTTATTTAGATTTtcactggagctatgaggctaacaCTGCTAGCACAATTTAAACCCAATataaacacagagttactgcagcagctcagaaaatgatgcttgttcttacagcctacaacacagagaccaagcagttaatcataatatatgatctataaGTTTATCTAAGGTAGcctggggggaatcactacactcTGATGGTTAACAGTGAACACTCTAAACTCTTACAtacattttgtctgatttattcTGTTAGCTTTATTACTTGTTAGCCATGTTAGCCTTGCAGCTTCAGTGCAAAAGAAACTTAACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248729.2 True 2249 mRNA 0.49 11 18348497 18358859
XM_007248730.3 False 2245 mRNA 0.49 11 18348497 18358860

Neighbor

gene id symbol gene type direction distance location
LOC103031500 LOC108441168 coding downstream 69796 18270382 ~ 18278701 (-)
LOC103031189 NA coding downstream 94663 18242919 ~ 18253834 (-)
LOC111192383 NA coding downstream 107375 18235138 ~ 18241122 (-)
LOC111192382 NA coding downstream 115934 18220871 ~ 18232563 (-)
LOC111192381 NA coding downstream 188437 18142817 ~ 18160060 (-)
LOC103033182 LOC108441158,LOC108273897,LOC107664611,LOC107708947 coding upstream 1712 18360572 ~ 18384405 (-)
LOC103033508 si:ch211-255p10.4,brsk1,LOC108441159,LOC107598587,LOC108247084,LOC103033508,LOC107557374,LOC108274928,LOC107654020,LOC107658484 coding upstream 29818 18388678 ~ 18409918 (-)
LOC103047794 mapt,LOC108274153,LOC108441162 coding upstream 94086 18452946 ~ 18498356 (-)
LOC111192385 NA coding upstream 116127 18474987 ~ 18477121 (-)
LOC103034677 NA coding upstream 144780 18503640 ~ 18512085 (-)
G37459 NA non-coding downstream 159053 18188473 ~ 18189444 (-)
G37458 NA non-coding downstream 160489 18187049 ~ 18188008 (-)
G37457 NA non-coding downstream 161586 18186368 ~ 18186911 (-)
G37456 NA non-coding downstream 162207 18185594 ~ 18186290 (-)
G37455 NA non-coding downstream 177143 18171142 ~ 18171354 (-)
G37565 NA non-coding upstream 51661 18410521 ~ 18449197 (-)
LOC103033820 NA non-coding upstream 52487 18411347 ~ 18418294 (-)
LOC103035005 NA non-coding upstream 173756 18532616 ~ 18534771 (-)
G37596 LOC108435052 non-coding upstream 188765 18547625 ~ 18547908 (-)
G37597 scn4a non-coding upstream 189223 18548083 ~ 18550231 (-)
LOC103047479 LOC108441156 other downstream 30540 18282490 ~ 18317957 (-)
vps25 vps25 other downstream 552509 17789951 ~ 17795988 (-)
cntd1 NA other downstream 643474 17692497 ~ 17705023 (-)
LOC103025753 LOC108425979,LOC108274047 other downstream 659113 17534703 ~ 17689384 (-)
LOC103025140 NA other downstream 871619 17473910 ~ 17476878 (-)
G37603 NA other upstream 213831 18572691 ~ 18573176 (-)
G37616 NA other upstream 274718 18633578 ~ 18635098 (-)
LOC103045068 antxrl,antxr1c,LOC108437311,LOC105893913,LOC106589351,LOC107720085 other upstream 1185365 19544225 ~ 19601284 (-)
c4h10orf128 NA other upstream 1459408 19818268 ~ 19825652 (-)
slc39a11 slc39a11,s39ab,LOC107653972,LOC107693650 other upstream 2152811 20511671 ~ 20679431 (-)

Expression


Co-expression Network