LOC103034039 (LOC108441161)


Basic Information

Item Value
gene id LOC103034039
gene name LOC108441161
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18420193 ~ 18449203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248734.3
GCGCTGCTGCTGCGTCTGTTCGAGCCAAAGCTGAGGGAGACGGACGAGCCGCCATCTTCCGTGCGCTTCTCCCTCCAACGATGAGCAAAATACGTGGAAAACGGCGCCCTATGACCACTCAGATACACGAATAAAGCCGCATACTGACGGGACTCGTGGTTGAAAACAAAAAAGCGGGTGGATGTTGTGTGGAAACGGTCACTTTTTCGGGGGGCGTTCGCCGTCCTTAATCTGCTGAGGCGCTGTTCGCTCGGTTCCTCGCCCATTTCGCGATTACGGACCGATACCGAGAGGACTCCCGGCTGAGAACGGGGTCTGTGCGTGGCAGAAGCGATGGGAAGCTGTGAGGACCGCCTGCGCGTGGTTTTCTAGTGTGGAATTTGCGTTTTGTACATAAAAAACACGCAGATATTGAGCCGAATCGTTGGCGAAATTCCCCCGGACAGAGCGCGGCCGTCACGTGGCTCTGTGGGTGGGCCGGTGTCCCAGAGCGGAGGACCAGGCTGGTGTTGCCCTTTCCCTAGCCCTGCATGGCTGCGATGGCGCCCGCTCTGACCGACGCCCCAGCCGAAGCCCGCCACATCCGCCTGAAGCTGGCCGCTGCCTCATCTGGCCTTTCCCCCGGCAGCGCAGAGAACAACGGCAACGCCACCAACCTCCTCCTGTCCTCTTCTGTCTCCCCGTCCACTGCCTCACCTGCAAACGGCAAGCGCCGCCTCCCGCAGGACTCTGAGGACGGCTGCCGGAGCTGCTGCTGCAACGGCAAAGGCCAGCCGCAGGAGCCCCTGAGCCTGGGCAAGCTGCAGCCGCTGGTGGCGTCTTACCTGTGCTCGGATGTGGCGCCCGTAGCGAAGGAGTCTCTGAAGGTGCAGGGCGTCCTGAAGAGCCACAGCCTGCTGAACGGCACGCTGTTCCACGGCGCTGAAGGTGGAGATTTCCTGCTGCGTAAGGCGCTGAGTGGAGGTGGACAGGTGAAGAGCCTTGTCAACAGAAGAGGAGCAGCAGGAACAGGGGGTAGCGCCATGGTTCCTGTTAATGGCCTGGCCAAGAAAACGGCGGTGCCCAGCACGGCTCTACCCGAGAAAGGTTGCATTGCCACAGTGAACGGAGACAACGCCAAACCTCCGACCAGCAGCGAAGCCTTGTTACCCCTGTCTTCAAAGTCGGGAGACGTCATGCCCTTGATAACTGCGCCAAGGGGTGACTGCAAACAGCAGAGAGAGTCGTCGGACATCTTCAGCCGAGCACCAGAAGACACGGGTATTGCAACGCAAAGCGCGGAGGTCAAATCTGAAACAGACTGCCTGCCCTGTAGTGGCCGGTTACAATCTTCCAAATCAATAGCGCTTACAGAAACAGTGAACAGTGACCATACAGATCGCCTTGAAGACCCTCAGTCATCCCCTGCCCCTCACTGCCCATCCCCCACGTCCTCCCTCAACCTGGAGGCTCTGCTGCAGGAGCGGGCCCAGCAGAGCCGACGCAGGCACACAGACATTTCAGGGCGGCTGCATCGCCTCTGCAAGAGGCTGCAGGTGGTGCAGGCCAAGCAGGTGGAGCGTCACGTCCGTCAGCAGGTCACTGGATTTCTGGACTGCGCCCTGAATCAGAGCTTTGCCTTCAGCCGCAGAGCTGACCTGCACACGGACTCCCTGGGCCATTTCCTTAAGGGAGGGTCCGTCCCCTCCGAGCTGGAGAAGCTGCACCTGAGCGGCAGCACTAATCTGAGGACAGCGGAGGCACAGTTTGACTCTGACGCCACGGAGAGCAGCTCGGGTGGAGAGAGCGacgtggaggaggaggagctttcCAGAGTGGACATCGAGCAGCGGCACATTAAACTGTGGAGAAGAGCAGAAGGCCGTTTCGCTCTGGAGAGAGCCTCCATCATAAGCCGGTGGACGTGGCTTCAGGCTCACATATCGGACCTGGAGTACCGCATCCGCCAGCAGGCTGACATCTACCGGCAGATCCGTGCCAGCAAGGGATCTGTTGAGCTGGGAGATTCTGCCACGTCGGGGCAGATCAGGGCAGATAAAGTGGAGAACCTGAACACACAGAGTGCAGCAGAGGGGCTCAGCCAGTTCAGCAGATCTGTTCAGAACCGCTTCCTCCACAGTGGCAGTACGGAGACATCGGCTGCTGACAGCAGCTGCACATCTGCTCGCGTTCGGCCTCTAATCAGCTGCAAAAGACGGCGCCTTATTCAACCCAACATGGTCCAGAACCTCAATGGCAAGGTACAGAGGCTGTGTTGTTCTCAGACGAGACAGTGTGACGTAAACGCCTCCTGCGTAATGTGTGGGGGCGACCGCCTCCCGCCCAAGGCAGAAGTGCCGTATGAGCGCCCTCTGGTGGAGAGAGTGGCCCTCTACGACCCCAGCATCCACACCACCCTCTCCCTGCAGTCAGACATGTCTCTCAGTGTGCAGCTCCAGAGTGTGCTGAAGTCTCATTTTCAGACTCGGCGCATCGAGAAACTGAAGCCCTTAAAAAAGCTCTCGCTCAAACACAAGCTCTCCCTCTTCTCCCCCTCTTCGTCATCCACACTGTCCAAACACAAGTTCAGGCTCTCCAACTCACACATGGCTGCAGTCAAGTTGTCTCGGCATAAGAGCAAATCGGAGAAATTGCGAAAGCAGCAGCAAGCTGAGGGCAGTGTCCGCACGCCTACGCTGGACACACccacctcacacaccacacacaccccctgCAGGACAGAGCACTTGCTGGACAGGAGCCTCAACCGCAAGAGGACCAGAGAGCACTCACTGGACAGAACTGAGTCCCCAAAGCTGCTGGTTGACACGGGAAGCCCGATTCCATCTCAGTCCAGCGCCCAGCCATCCACCCCGAGCTCCCTGAGCCGACAGCTGTCCCTCCCCACCGACACCTCCACACCGCTGGCCCCCAGCAGCCAGACTGCCTCCTGCTCCATGGCGatgaaaaagaggaaaagtgAAAACTCGTTTGACATCAACAACATAGTCATCCCCATGTCTGTGGCAGCCACTACTAGAGTGGAGAAGCTCCAGTACAAGGAGATAATCACACCAAGTTGGAGGGAGGTGGACGTGTTTTCCAGATCCCTCGCTGAGGAAGACAAGGATGTAGAGgtgGAGGACATGTCTGATGCTGCTTTCTCGCATCTCCATCAGAAGTATGAGGATCAGGAGCGCTCGCGCTGGAGGTGGATTGCCCTCGCGCCGGCCAAGAGGAGAGGCAGCAGGTCGTACAAGTCTTTGGATGGTCGGACTACGCCGTCTCTGAGCGGAACGAACCCGTCAACTCCTCAGCCCTCGTCCCCGGACACCGGACACTTCCACCTGCTGCAGGATTACGGCCCCGTCCCATCACCCCTCAGCCCTCCCAGTCCAGATACGCCCTGCTCCCGCGACGCACACACACCTCACTCCAGAGACGCCCATCGGCTGCTTTACAGCGAGGACACGCGCTGCTCAACACCAGACTGCACCTACGAGGAGAAGACAGTGCATCCCTGGGAGCAGAGGAGCTTCCCCCTCTCAGAGGATCCGGTCGCGGAGCCGCCTCCACACCATCAGAGACTTCCACTGGGCCTCCAGAACACCGGTCACTGCAGAGCCCGCTCAGAGAGCGAAGCTTACTCGCCATGACTGCTTTCTACAGCATAAAGAAGCCCCACTCAGCTACCGGGGACCATAAATATAAACCACACCCCTCCTTCTGGCATTAAtgacacatacatacatacacacaaaaaagacatgaactcATACTAaatgaaaacaagaaatattaaCGGACTTCTGTTGTTTGATATTCAAACATCAGCCAAatattttcacagtttttagTGAACATCAAGGAACGTAGAAATCTAAACCTGTCTCCTGAGGCCGTCTTttctcacagaaaaaaaaaaaaagagttaaatgtatggtaaaaaaaaaaaaaagaacaaaaccacaaaaaaaaaaaaaaatcaaaagcatAATTATTCTTATAGTCAGCTAAACTATGTTCTTGGTGTGGTATTCTAACCTGTCAGGTGATCACTTCGTAGCGCACTATGTAGCAGACTTCAGGAAGGGGACTTGACCAAAAGGGTGTTTCCTTGCTGACTAGTTTGTGTATGCTTGTACTGTGGAGTGACAACGACCAAATCCAGACGAAGTAGGTTTTCCCTCCTCATTAATCTCAACTAATAGACACACATCGAATCATCAGAGCATCCACGACTAGAAGCACTTCATACGATGTTCGTATCTGTCTGTACACAGTCTGTCCATCTCCTCTGCACTCTTTCAGCAGCCCTGTTTTTCTCCAGTCACCCCTCAGATACGGAGTTAATCCACATCGGCAGAAATCGCAGTCTGATTCTACATCATGTAGAGAATTCACAGCTGGGGCTCATAATGAACATTATGGAAGCTGAGCTCAGTTCAAGTTCCTCCACAAGTTCCTCCACATCGCCGTCATATCTTCATCCCTTCTTACCTTCTTCCTCTCCCAGTCATTTTGTAACTAAAGAAAGTAATCTTTCATGCCTAACATCTCCAACTTCCCCGACCCTCCTTACTCTCAGGTTCTGCAGTTCTACAGGCGTCCGTTTCTCTCCAGTGAagcttctgtttattcttgTTCGCCATTTGTGTTTAAATGCAGCAGATCTGATCTCAGTTTCATTTCCTCTTCAGCACTGTCGCCCGGAGTAACTACTGGCTATGCAACTCAACATTTATTATGGTTTATGATCATCTCATAATCTTGTCCctgtttgtctttgttttttttccttcaatcacagtttttgttttctgttttatttttctttgttcctttttttcctccatGGTCTTTGTTTTTGTAGTTACTCAAGACAGGTTTCATTGTACGTTTTAATTGTTCGAGAAGTTAAATCATTTGCAGGAAAAAAAGGCTTGTAAATAGTACCATTAAAACAAGTCAAACCCCTCAAA

Function

NR:

description
PREDICTED: KAT8 regulatory NSL complex subunit 1-like isoform X1

GO: NA

KEGG:

id description
K18400 KANSL1; KAT8 regulatory NSL complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248734.3 True 4961 mRNA 0.54 14 18420193 18449203

Neighbor

gene id symbol gene type direction distance location
LOC103032559 LOC108441169 coding upstream 76732 18332474 ~ 18343461 (+)
LOC103030877 NA coding upstream 205989 18200351 ~ 18214204 (+)
LOC103047175 LOC108441166,LOC108273636,LOC107557340 coding upstream 234210 18171354 ~ 18185983 (+)
mapk7 NA coding upstream 281315 18128440 ~ 18138878 (+)
LOC103029386 NA coding upstream 380387 18029098 ~ 18039806 (+)
LOC103021514 NA coding downstream 69705 18518908 ~ 18529955 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding downstream 84331 18533534 ~ 18583781 (+)
cd79b NA coding downstream 142702 18591905 ~ 18598830 (+)
plekhm1 plekhm1 coding downstream 166045 18615248 ~ 18640148 (+)
LOC103035226 rab5c,LOC103035226,LOC108431395,LOC108274320 coding downstream 259782 18708985 ~ 18716376 (+)
G37534 NA non-coding upstream 33541 18386414 ~ 18386652 (+)
G37501 LOC108441156 non-coding upstream 102241 18313306 ~ 18317952 (+)
G37492 LOC108441156,LOC108274106 non-coding upstream 130807 18286903 ~ 18289386 (+)
LOC111192384 NA non-coding upstream 166421 18232596 ~ 18253772 (+)
G37424 NA non-coding upstream 202910 18192610 ~ 18217283 (+)
G37557 NA non-coding downstream 20956 18470159 ~ 18472573 (+)
G37592 NA non-coding downstream 140019 18589222 ~ 18641095 (+)
G37652 NA non-coding downstream 363536 18812739 ~ 18812951 (+)
LOC111192409 NA non-coding downstream 514034 18963237 ~ 18964036 (+)
G37735 NA non-coding downstream 765365 19214568 ~ 19214818 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 43848 18371378 ~ 18376345 (+)
G37404 NA other upstream 306267 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 320214 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 449194 17961940 ~ 17970999 (+)
G37152 LOC108425993 other upstream 459889 17952580 ~ 17960304 (+)
LOC103022762 NA other downstream 196432 18645635 ~ 18707728 (+)
G37749 NA other downstream 880165 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 1031853 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 1039696 19488899 ~ 19511441 (+)
G37943 NA other downstream 1706525 20155728 ~ 20158339 (+)

Expression


Co-expression Network