LOC103035226 (rab5c,LOC103035226,LOC108431395,LOC108274320)


Basic Information

Item Value
gene id LOC103035226
gene name rab5c,LOC103035226,LOC108431395,LOC108274320
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18708985 ~ 18716376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248736.3
GATCACCCGAGGTGTCCGTATGCGGATGTGGGTCTGAAGCAGAGGCCCGAGGAGCCGCGGGGAGCGTCATGTTGTTACAGCGGGAGAATTAACGTTACCGCAGAACGGAGACAGGACGGTCCGTGACCCGCTGTTTAATCAGCGCGTGAACCCCCCCCTAGGATCAGGGCATCGAGACTGACTCTGGGCCAGACATTGTGACCTGACCAGTCCTAATCCAGGACCTTCAGTTTTTTGAGTTTTCGCTCTGCCCCTGTGGCCTGTGGCCCAGGTTTCAGCACTTTGTCTCAGCAGCGAATCTTTTTGACACTATGGCGGGTCGACCCAACGGGCCGGCCGCAGGGAATAAAATCTGCCAGTTTAAACTGGTTCTGCTTGGAGAATCGGCAGTGGGAAAGTCCAGTCTGGTCCTGCGCTTCGTCAAAGGCCAGTTCCATGAGTACCAGGAGAGCACTATCGGAGCTGCATTCCTCACACAGACAGTATGCCTGGATGACACAACAGTAAAGTTTGAGATTTGGGACACTGCTGGACAGGAGCGATACCACAGTTTGGCCCCCATGTACTACAGAGGAGCACAGGCTGCTATTATAGTCTATGACATAACAAATACaGACACATTCACACGAGCAAAGAACTGGGTGAAGGAGCTGCAGCGGCAAGCCAGTCCAAACATAGTCATCGCTCTGTCCGGGAACAAGGCCGACCTCGCCAACAAGAGAGCAGTTGACtttcagGAGGCTCAAGCTTATGCTGATGACAACAGCCTTTTGTTCATGGAGACATCTGCCAAAACAGCCATGAATGTCAATGAAATTTTCATGGCCATTGCTAAGAAGCTGCCGAAGAACGAGCCTCAGGGTGGTGGAGGAGCGAGCGGCAGGGGAAGGACCGGCGTGGATCTGCAGGACTCCGCCCCCCAGGCCTCCTCCGGCAAGTGCTGTTAAATGTCCACCGCAAAGGGTCCAATATAACAGAACCTTGGAGACAGAACGACCGATTATCAGAAGGAGAGCAATCGCACTTAcgagagattattattattatttctgcagagattgggtttgtttttgtagttttttttgttgttttttttctttgatcaAAAGAGTTTTCTGAAAATCATAAGCTAGAGGGAGTGCCACAgtgcctctctctttcactctgtttctctctctctccccccatGTCTCGATTCTTATCGTTATTTTATGATAATACTAACCTGATTCTGTCTTAAGGCTTATTTTTAAAGATGGAGAGATGAGTACCTAATATGTTGTATGTTTTGGTGATGGGTGCatgtagcatttatttttttcatattatatgttcatattcttgtttttttttttttttgttttgtttttttcatttctggCATTTACTTATCTTCCTTATCAGCGGAGACGGAGCCGTGGGGAGGGCAACAAAGAATCATACACTTCcaaatttgtctgtttttgtaaatgaactagtattgtttttattacagcAGCTCCACCTTAGATATATCATGGCATTACTGGGGTTGAATAACACATGCGTACGGggctgtgtgtgtctctgatCAATGTGTAATATGATAACTCCAATGAAGTGCAAAGTCAGCATTACCACTTAAACCAGAAAACATTTTTAGCATCATGTTTTTCAATCTGTAAGATATTATGGTGATacaagaataaaacaataaagtgGGAAAGATTTA

Function

symbol description
rab5c Predicted to enable GTPase activity. Acts upstream of or within several processes, including angiogenesis; gastrulation with mouth forming second; and regulation of endocytosis. Located in early endosome. Is expressed in axial vasculature; blood; and intermediate cell mass of mesoderm. Orthologous to human RAB5C (RAB5C, member RAS oncogene family).

NR:

description
ras-related protein Rab-5C

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248736.3 True 1711 mRNA 0.46 6 18708985 18716376

Neighbor

gene id symbol gene type direction distance location
plekhm1 plekhm1 coding upstream 68837 18615248 ~ 18640148 (+)
cd79b NA coding upstream 110155 18591905 ~ 18598830 (+)
LOC103021833 scn4a,scn4aa,LOC108435052,LOC107732174,LOC107654028,LOC107598592,LOC107664628,LOC107708946 coding upstream 125204 18533534 ~ 18583781 (+)
LOC103021514 NA coding upstream 179030 18518908 ~ 18529955 (+)
LOC103034039 LOC108441161 coding upstream 259782 18420193 ~ 18449203 (+)
LOC103023065 LOC108431394,LOC107590592 coding downstream 9516 18725892 ~ 18806982 (+)
LOC103035736 dnajc7,LOC103035736,LOC105007721,LOC108431365,LOC100706534,LOC101467049,LOC102783216,LOC105919562,LOC106589259,LOC106607285 coding downstream 98396 18814772 ~ 18827717 (+)
LOC103023371 LOC108431393,LOC103369716 coding downstream 113591 18829967 ~ 18865676 (+)
klhl11 klhl11,LOC107551837,LOC107694394,LOC107556757,LOC107674689 coding downstream 152770 18869146 ~ 18878812 (+)
LOC103036574 NA coding downstream 167519 18883895 ~ 18895851 (+)
G37592 NA non-coding upstream 67890 18589222 ~ 18641095 (+)
G37557 NA non-coding upstream 236412 18470159 ~ 18472573 (+)
G37534 NA non-coding upstream 322333 18386414 ~ 18386652 (+)
G37501 LOC108441156 non-coding upstream 391033 18313306 ~ 18317952 (+)
G37492 LOC108441156,LOC108274106 non-coding upstream 419599 18286903 ~ 18289386 (+)
G37652 NA non-coding downstream 96363 18812739 ~ 18812951 (+)
LOC111192409 NA non-coding downstream 246861 18963237 ~ 18964036 (+)
G37735 NA non-coding downstream 498192 19214568 ~ 19214818 (+)
G37751 NA non-coding downstream 625723 19342099 ~ 19342794 (+)
G37767 NA non-coding downstream 758246 19474622 ~ 19476578 (+)
LOC103022762 NA other upstream 1257 18645635 ~ 18707728 (+)
G37531 LOC108441158,LOC108273897,LOC107664611,LOC107708947 other upstream 332640 18371378 ~ 18376345 (+)
G37404 NA other upstream 595059 18107564 ~ 18113926 (+)
LOC103046566 NA other upstream 609006 18063983 ~ 18099979 (+)
G37155 ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 other upstream 737986 17961940 ~ 17970999 (+)
G37749 NA other downstream 612992 19329368 ~ 19331661 (+)
G37812 mms19,LOC106578995 other downstream 764680 19481056 ~ 19484915 (+)
LOC103039215 ubtd1b,ubtd1,LOC108437310,LOC107720068 other downstream 772523 19488899 ~ 19511441 (+)
G37943 NA other downstream 1439352 20155728 ~ 20158339 (+)
G38079 kif22,LOC107664627 other downstream 2302793 21019169 ~ 21030797 (+)

Expression


Co-expression Network