tekt3 (tekt3,LOC107753251,LOC107684491)


Basic Information

Item Value
gene id tekt3
gene name tekt3,LOC107753251,LOC107684491
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12964782 ~ 12976020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248744.2
TGGAGGCTCTCTGGGTGCATTTATCCAGGTACTCTAAAGGTGCGTTGTGGTCCAGCCAGGTAGCACCTCTCCACAGCTTCAAAACACCTGAGACCACCAGGAAGGACAGGAAAGTATCGTAACGTTTTTGATTGACACATGGAGCTGATTGGATCCACGCAGACGGCCACGTACACGCGGCCCAAGACCAGCAACTTCCTACCTGCCATTTCCACCACAGCGTCCAGCTACAGGAACTTCCCGCCAGCCTTAACCGCCAACCAGAACGCCAACATGCCCTGGAGGACTAACACCTACTTCAGGAGCGGAAGTGCTATTCCCTCCATCCTGTCCTCCTCCCAGAGAGACAACCTGGAGCTGGTCCGGGCCAAGACCATGTTCTACCCCTCCAACAGGGCGGCGATGAGCACGCGCTACATGCCGGACGACTGGTTCAAATCCAACTACAACAACTACAGGGAGTCCGAGTCGTCCAGGAACAGCGCGGAGAGGCTGCGGAGGGATACGCTCAGACTGATCCAGGACCGAGACCAGATCACCCGCTGGACACAGGAGAGCACCAGCAAGAACCTCGGAGAGAGGCTGAACGACATCACCTTCTGGAGGTCTGAGCTGCACCACGAGATCGATAACATGGTGTCAGAGATAGCAGCGCTAACCGAGGTGAAGAGGAGGCTGGAGAGAGCGCTCGCCGAGACCGAGGGGCCACTGCAGaCGTCGCAAGAATGCCTGTTCCACAGAGAGAAGAGAATGTCCATTGACCTCGTTCATGATGGTGTAGAAAAAGACCTGATCAAGGAAGTGGAGGTGATAAAGTCGTGTCAggagaggatgaggaggagtcTGGACAAGGCTATCGCTCAGCTAGCGTCAAATCGAGCAGCTCAGCATGAACTGGAGAGAGATCTGAATGATAAGGTAACGGCTCAGCGGATCGACGACAGGTGTCACCAGATGAGGAACACTTCAGATGGAATCAGCTACTACAGAGGCATCGATCGCCTCGATCCATCCCTGAGTTTACCCGATTCCTGGTCCAAATTCACGGACGACAACATCCTGCTCTCTCAGAGCGAACGATCCACATCCCACAAACTCCGAGACGAGATCGAGGTTCTCCTCAACACCACCGCGAACGAGATGTGGAACCAGTTCAACTCCGCCAACGTGTCCTTCACCAACCGCATATCTGAAATGGCTGAGGCCAAGAACAGCCTGCAGACTCATTTGGCGAAGACTCTTCAGGAGATCTTCCAGACCGAGATGCTCATTGAAACCTTGAAAAAAGCCATTCGAGATAAGGAGAACCCTCTGAAAGTGGCTCAGACCCGTCTGGAGGAGAGAACCCGCCGACCCAACGTAGAACTCTGTAGAGACAATCCACACCACAGGCTGGTGGGTGAGGTGAGGGAGATCGAGGACTCGATCTATAAGCTGAGGGAGAGGCTGGCGGAGGCTGAGAACACTCTGCAGAACCTGGTGAAGACTAAAGTCACTCTGGAGCATGACATCTCAGTCAAGGCCAACTCCCTGTTCCTGGATCAGGAGAAATGCATGAGCATGAGGAGAAGCTTCCCCAGCACCCCACGTCTGGTGGGCTATACCTAAACCACAGGATccaacattt

Function

symbol description
tekt3 Acts upstream of or within cilium assembly. Predicted to be located in motile cilium. Predicted to be active in microtubule cytoskeleton and sperm flagellum. Is expressed in neuromast; neuromast hair cell; and otic sensory epithelium. Orthologous to several human genes including TEKT3 (tektin 3).

NR:

description
tektin-3

GO: NA

KEGG:

id description
K18630 TEKT3; tektin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248744.2 True 1627 mRNA 0.54 8 12964782 12976020

Neighbor

gene id symbol gene type direction distance location
LOC103024023 LOC108273716,LOC108429130,LOC107690938 coding upstream 133463 12717653 ~ 12831319 (+)
LOC103039392 chmp6b,chmp6,LOC108429718,LOC107749864,LOC107684156,LOC107755461,LOC107690936 coding upstream 254414 12704338 ~ 12710368 (+)
dpysl4 dpysl4,LOC107653119,LOC107706606,LOC107582189,LOC107654562,LOC107568139 coding upstream 272714 12671545 ~ 12692068 (+)
jakmip3 jakmip3 coding upstream 299854 12603957 ~ 12664928 (+)
glrx3 glrx3,LOC107745700 coding upstream 870051 12073363 ~ 12094731 (+)
pmp22 pmp22,LOC107684480 coding downstream 15123 12991143 ~ 13009673 (+)
psme2 psme2,LOC107653260,LOC107716467,LOC107556770,LOC107674582,LOC107551845,LOC107727955 coding downstream 321528 13297548 ~ 13305858 (+)
LOC103038526 NA coding downstream 376835 13352855 ~ 13359288 (+)
heatr1 heatr1 coding downstream 447017 13423037 ~ 13459971 (+)
arg1 arg1 coding downstream 484631 13460651 ~ 13471964 (+)
G36106 NA non-coding upstream 10071 12954411 ~ 12954711 (+)
G36011 NA non-coding upstream 127462 12835279 ~ 12837320 (+)
G36004 NA non-coding upstream 170578 12772988 ~ 12794204 (+)
G35992 NA non-coding upstream 267574 12696949 ~ 12697208 (+)
G35972 NA non-coding upstream 269166 12694830 ~ 12695616 (+)
G36129 NA non-coding downstream 240764 13216784 ~ 13278356 (+)
G36146 NA non-coding downstream 331073 13307093 ~ 13311608 (+)
G36154 avl9 non-coding downstream 347154 13323174 ~ 13325570 (+)
G36155 NA non-coding downstream 349915 13325935 ~ 13336434 (+)
G36166 NA non-coding downstream 416625 13392645 ~ 13394580 (+)
G35995 NA other upstream 261726 12702305 ~ 12703056 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 other upstream 397841 12111690 ~ 12566941 (+)
G35967 NA other upstream 593820 12366540 ~ 12370962 (+)
G35903 NA other upstream 1162578 11801458 ~ 11802204 (+)
dock1 dock1,LOC107740868 other upstream 1962977 10747637 ~ 11001805 (+)
LOC103039668 LOC108435045 other downstream 526226 13502246 ~ 13520702 (+)
G36371 NA other downstream 1487117 14463137 ~ 14463639 (+)
LOC107197918 NA other downstream 1588905 14564925 ~ 14567912 (+)
G36439 LOC103041415 other downstream 1813360 14789380 ~ 14790833 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 2456809 15432829 ~ 15440157 (+)

Expression


Co-expression Network