pank1 (pank1,pank1b,LOC108413682,LOC107753437,LOC107669213,LOC107683711,LOC107758439)


Basic Information

Item Value
gene id pank1
gene name pank1,pank1b,LOC108413682,LOC107753437,LOC107669213,LOC107683711,LOC107758439
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21446 ~ 37478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251147.3
TGCTTTAGCAGTGACGTCGCGAACCGGGTGTTTGACTCGGAAGCTGCGACGGCGGAGCGAAAAACccgtgaagaaaaaaaaggagaaacgGTTCTATAAACGGTTTCTGACCGTATTTGTCCGCTAATATCGCCAGTAAACAGACATATGATCTCTCATTAGTCAGAAACATTGAGGATTTGAAGGCTCCGTCGTCACATCGAGGACGAACAGGGAAGAAGAGACGGACGAACTCGCTCACCGCCTCGGTCTTCAGCTGTTTAACGCTCGCCTTGCTCGGCTCCCCCACTCGCCGTGTGACATTATGGAAAATGCCGACCAGAAAGGAACCCCCACACACTACACGAACGGGCTGCTGAACGGATTTCATCCGTCAAACGGAGCTGGAGGAGGCGGCGGAGGAGGAGGCAGCAGCGCTAGTGGCACTAACCCTCACTGTAGCGGTGGCCATCATGGTATTGAAAATTTCCACCATCTTCACAGACCTGATGTTCACAACAATGGCTCTCCTGCCAAGCGCTGCAGACTCAGGAGGCGGATGGACTCCGGGAAGAAGAACCGGCCCCCTTTCCCTTGGTTTGGCATGGATATCGGAGGCACCCTGGTGAAGCTGGTTTACTTTGAGCCGAAAGACATCACGGCTGAAGAGGAGCAAGAGGAGGTGGAGAGCCTGAAAAGCATCCGCCGTTACCTGACCTCCAACGTGGCCTACGGTGACACAGGCATCCGAGACGTCCACCTGGAGCTGAAGAACCTTACCATGTGCGGCCGCACAGGCAACCTGCACTTCATCCGCTTCCCCACACACGACATGCATAGCTTCATCCAGATGGGCCGGGACAAGAACTTCTCCAGCCTGCACACCACGCTGTGCGCCACTGGAGGAGGAGCCTACAAGTTTGAGGACGATTTCAGGACGGTGGCTAATCTGGAGCTGCAGAAGTTGGATGAGCTGGACTGTCTGATTCAGGGTCTGCTGTATGTGGATTCTGTGGGCTTTAACGGCCACCCTGAGTGCTACTTTTTCCAAAACCCCTCCGACCCTGAAAACTGTGTCAAGCAGCCATGTTGCCTTGACAACCCTTTCCCCATGTTGCTGGTAAACATTGGCTCGGGGGTCAGCATCCTCGCGGTCTACTCCAAAGACAACTACAAACGGGTCACAGGCACCAGTTTGGGAGGAGGCACGTTCCTCGGCCTGTGCTGCTTGCTGACTGGCTGCGAGACGTTTGAGGAGGCCTTAGAGATGGCAGCAAAGGGCGACAGCACTAATGTGGACAAGCTGGTAAAGGACATTTACGGAGGAGATTACGAGCGCTTCGGTCTTCAAGGGTCCGCTGTAGCATCCAGTTTTGGTCATATGATGAGCAAGGAGAGGCGTGATAGCATCAGCAAAGAGGACTTAGCCCGAGCTACTCTTGTCACCATCACAAACAACATTGGTTCCATCGCCCGCATGTGTGCTGTGAACGAGAAAATCGAAAGAGTTGTATTTGTTGGGAATTTCCTGCGAATAAACACTGTGTCAACAAAGCTGCTAGCATATGCCATGGACTTTTGGTCGAAAGGACAGTTGAAAGCCCTGTTTTTGGAGCATGAAGGTTATTTTGGGGCTGTCGGTGCCTTCCTAGAGCTACTGAGGATGACTGAAGACCTCTGAGGATTTCGAGGAACTTAAAAACTTGCCAGAACCAGAAGCTGCTGTAAGATGTCAGGAAACCTCCTCCCATAACAAGGAAAAGCCATTTGGATAATATCAGATATTTAAGATAATGCCTGTACCCTCCTTCCCTGATTGTAAACCTATTGCTAGCTTGATCTCGATACATGAATGGGTTGCGGAGGTGAGTGTTTTGCGTATTTTACCACTAAAGAGAGAGCCTCTCAAGGTACAGTCTACTGTAAACTGAGTTGAAGACGTTTGTGTTAGTAGACCGTGCCCTAAAGCCAAAATCAACAGAGATTTTTTTAGACTGATGAGCACTTCTACAGATTACCGTTTTGTGTTGTACGTTTTAAATATCTAGCTTTAGTACATGGCTTAGAAGAAATAGACCCAAAGTGGTCACCTTATTCCAAGTCAATGTTCCCTTCCATTGTATTCAAAGATCACCTACAGTACCTTaccacatataaaatatatgcttcaTCAACAATTTCGATAGAGTTTGGTAAAGAGTTTTAAATGCCCAGTAAAAAAGTAACGTATATTACCTTACTTTCATAGGCATTAGGTCTCAGACAGCCAAGACTGGAGTTGAGTGCATTTTAGACGGTTTCCAGATAACCAAGAATATGCAGTAAACATACAGGCTGTGAGATTTAATGTGCacactagctaagctaagctaagctaagctaggtcCAGCTGTGATGATTAAAGGAGATCTGGGTTTGAGAACCAGGTCAAGTCACAGGTGGAATGTGTTCCTTACTTACCTACTTattggacattttaaaaagacagtttaaatattctgcattatAAATCACAACAGGATTAGTGCTATATCATAAGCATTATTTTATCCACAGTATTAGCCAGCTCAGTTTTGATTTCTTCTCTTCAACCGCCAACTGTAGGTCTACTAACACACATTTTTCAACCAAATAGAGACTATAGTTAAACTAGAGAGTTGTGGGGACCAAGTTGTCAGTGTTGAACTGATCATATTATGGCTCATTATGATCTGTTAGGTAAATAGTTAAtcgctgatgttttttttttatttgtagtcaGCTCTGATATTCTCCCATAGAAGAAAGAATAATGAAGTGTTGGCTAAATGACTACTTCACTCTAACGACCATTTTCTTCTTACCCCGAGATGTACTTACACTGTAAAAGAGGTTGTtactgatttttattattattattattatttgtttatatttaatccatattttgcAGATTGTATAATTTTATTGATTGTCCTATTTGTGGCATTACATGATGGTATCATAGTTTCATTTGAAACTACAAATCGAGCCTGTAAACCTTTCTCCTGCCTTTCCTTCTGCCTTGTCCAACAAATGCCTTCATTATCATCTCTTTAAGTCATTCTTTATGTCTTGTTTCTTTCAGACGACCAGCATCACATACCTTTTAACACCTTTTAATACTGTATCTGTTGTTTGGCCTTCTCTGTAAGCTGAAAATATTAACACAATATGGTGGAAGCATTGTTCAGTTTGCTGCATCTGTAGTGTATAGTCAATTTTCCTGTTAATGCAGCTACATATCCCACTATTGAtatattaaaaactgttttgtatGATATCTTATAAATGATAATAAGATCGCAATATCGCACCTGCTACACAAATGACCATGCAATTAAATTTGGAGAAGAGTATTTTAGAAAAGAGTCATTAGTGTGGAAATGGCTTGATTTGCTCTTAAACACTGTTAGATATTCACAATTGAAATATCAAGTGTGCTGTATTTTTGCTAACAGCCCACAGAAGCCTGTGCTGAATAGGGCTTTATAAACgaatgattattattttggatGTCGACTAATCTGTTGActattttttcagattaatcATTGCTCATTTCTGCCAGGCCCTGAATGCAGATCCTGTTCCTAGGCTTTCTCTATCACTTCAAAATactagaaacagcagaacatagGATGTAAATGCCTATTAAATGCCCAGAAgacatttaaatatgaaatgttcGGGACtttaatgagaaaataaatagtTTCTATCACTTTTAGTGAGTGAGCAGCCCTTTCTATTATATGTTTCTATTCCCAGCACTTTGTCAAAACCTGCatagttacaaatgaacaactagCTGACACTGTAATTTGGAGTCGACAACTGTTTATAAGTGACATCGGTAATTATGGCGACTAATCGGTGCAGCTATAGTTCTGTCCAGCATCACAATAGGAGTGGTTTTAGTAGAAAACTCCATCTACCcacaaagagagagcaaggccagttctgctctctctcagactctggctgcttgATGGCGAGCAGCATTCCTCAGATCATAGTTACAACCCCTaggcctgctggaccactcaacacctataaatactatatttaaacatttgtacTTTGTTCAGAGTATTTCAATGTATCGTATTGTATCGTATATCACTGTGAATCGAGATTCGAGTTGtttgccatatcgcccagccctatatCCCAGACTGTAGATGCGAAACGGCGGATCCCTTAACTAGGGAAAAGAACCAGGGTtactggggttgctgcagtcaAAGACGCACAATAACATGCCGGACAGGTTCTCAAAGCTAATTCCAGAAAATCTGGTATTTCTACACACGTCAGGCTATATGTAGGTTATGAACCCAGTGCtcctttataaacattttattttcttgctccAACTTGTGTGATAGTATCTAAATTTGCACAAAACTTTGCAGCATGGGATCTACGGTCCAGTCTAAGCTGTGTATGTAAATACTACactgctaaactgctgtatgtGCTGCAGCCTGaacatcgttttttttttaattcagacaaacACGCAGCAAGTAGTTGAACCAGTCAGTTACTAGAAAACCAAATTCCTTTTGGTGCTTGCGTCCCTAAATTCCTCCAGCATCTATCATTAGCCtgacatttttctgttttaggaCGCACACTGAAAGTAAATTTCAGAATGACAGTGGTGGATTAttgttttcaaaaaaataatccacatctgacaaaccttttaaaaattatatatatgtattattttaaaaaatattactaaaaaagttacattttgtaATCCAAgtgggatttatttttttccaagaaTTATTGTATTGGCATTAAAAGATTTGTCATGTACATTTTTGAATTTTCGCTGTTGTATCAGATCTTGTTTCTCTGAAATTCTATCATTAATGGAAAAGtaagattaattttaaaaacaaaatctaaatatatatattttaaatcaatagGTTCTTTTGTTGCGGAATATAAACAATAGCTGAAAAAACCCACTAAAGTATTTCTGAAAACATACTAGTTACATTTTGATGTCAGTTTGAAATTCTAAATTTAAAGAATTCATGTATCAGCATTTAAGTATTTGTACATTGTTGTATGTTTTCCCCAAAATGTGAGGtattactggcgtcagctctgAATTCCCATATCTGTGAATTACTGATTCTATTTTGGATCTTCACTGTTTTAACAGAACCTTTTTCACCCGAAACCTTAACATAGAAGCAAaagctaaaataactttaatGTATACAATGTAATCAATGTATACAGCAACCGTAGTAGCTTATAATGACTGTCAATAAGCTCATATGCACTAACAAtgtgtataatttatattaagaGATGTTTCGTAATGTATTATagtatctgttcataagaacattgtacacactaatatacagcATAATGAACCGCATCTTTACGAAGAGATAAActtatataaactgtatataactTTAAACTGTTATAACAGCATATGACCTGTCTTTGTAAGTTATTGTACAAGCTTATGACCCTCATTATAAGGTACTATGTAAGctatataaagtgttaccaaaatgttTATCCAGTAGGTTTGTTTGTAGCAAATATTAACAAAAGCTGGGAAAAAACACCAGAAACCTGAAACAACGAGATTTAGATAGAAAGCATGGTCTCTGAAACCAGCATGTAATTTTAAGTGCACAGAACACTAATGTAATGCTTCTGCTAATGCCAACAAAACCGTTAGGATAGAGTAAGCATAGAGAATTTTACGGGTATGTGATGCTGGAGCTCTCTCTGATCGTTTACTTGTGTTTTCATTTCATGATCCGTTGCCTCTCCTCAGTCCTCAGAATTGCCTTATGCAGTTGGTCGCCATTTAGACTTGAGTATCTGCATATGCACCATGGCGGTCCAGCACAACTCTGAGCCACTACAGCAACTTTCACATGTATTGGGGTGCCTTTTACTGATGGAGTCCAGACTTTTATCTGTGCATCACcgctttcttcttcttcttctccttctccttctccttccaGTGCTGTGCCCAAATGTGtctgttttaaacatgcatccTGCATTGTGTGGGATTCACGTTATTTGTTCATGttacttgttttgttttcttcagTAAGTTGAATACATGTTTTTGTACATGCTGTTCTACGATTCGCTTTGAGCCACTCACAGCCTATAATAACTACACCTGGAATAATGGCATGTATGCAAAGCAGGGAGAGGCGAATCGACAAGTCAAGGCACTACATAATATATGCTTTGCTTTGTACAGGCCTCAGTTCAGCATTTTTAGAATGAATGGAATGGCCTTGCATTTGTGTACACATTGTGTGACAAACCATGGTCATggttgcttttgtttgttttgtttttttggtcatAGATTTAACTGGGGGTATCATCTTTATCCACGCTATAGAGTTGCTCTGGAAGCTACACTATAAAAGCTACACTGTATTAAGAGTAAAAGTAATGGCGCAGTCAGATGTACATAATTTCCAAGCCAGtaatgaatattaaataaaaatgagaaaacaacTGTCGcttaaataagtaagtaagctTAAAGACAACATTGTCTCTTTTGTTAGAGATTATATCCATCTGCCAATGGTGTacatgtttaattctataaattatAATTCATGCATGTTCATCTGTTCAAATCTGTGTAAGCATATCATCGCTGTTGCActaaaaaccttgtatcttcatttttgtcacattttaacTTTTAGTAATCTGACAGTGtttctttacatatttacatcTAGTATAATTTTAtggtgaatggaccaatagaaatgctccaaaattgtAACTTGGAATAAAAACATTctccattgacttccattaaaagtccAGAAggttttttccttctcttgtaAAGTTGAAAATTTGgagataaaaagtttttttcgtGACAGCGAAGATATTTTTAGGATTCAAAATGATTAAGTGATTATCTCTTTCTTagtctgattattattatttctaatacTAAACCATTTACTATTTTACATGAGTTCTTATAAGCCTGATGTCCTCATGGTGTACATTTTCATGTGTTTGGCCTCTAATAGTTTAACACATTAAGACAACGTCATGATTTATCCACTAACAGCAACAGTATATTACTGTAATCGTCTCTTTCAGTGTTGTCATTTGCTCTGTTCTTACAGTATCACTACATCCaagtgttttgtgtttacttgtagATGAGACCATTGCTTATTTAATGCCCTCTGTGGAGTGAACAGCTCATTCCAAACCTGCTCTGAAATTCCTGTAATAACACCTTTTAATCTTGACCACGTTTCTGTTTATCCTGCAACTTTTTTCTGTCGACAATAAATCTTGAATACTTACCAga

Function

symbol description
pank1b Predicted to enable pantothenate kinase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including anterior axial hypoblast; hatching gland; mesoderm; pronephric duct; and sensory system. Orthologous to human PANK1 (pantothenate kinase 1).
pank1 Enables acetyl-CoA binding activity; pantothenate kinase activity; and protein homodimerization activity. Predicted to be involved in coenzyme A biosynthetic process. Located in cytosol and nucleus.

NR:

description
PREDICTED: pantothenate kinase 3 isoform X1

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251147.3 True 7378 mRNA 0.39 7 21446 37478

Neighbor

gene id symbol gene type direction distance location
slc16a12 slc16a12,slc16a12b,LOC108413683,LOC107753457,LOC107669179,LOC107584144,LOC107758438 coding downstream 1626 918 ~ 19820 (-)
LOC103039921 NA coding upstream 34656 72134 ~ 96170 (-)
LOC103039609 NA coding upstream 63762 101240 ~ 109740 (-)
ppp1r3c ppp1r3c coding upstream 250512 287990 ~ 299000 (-)
LOC103038678 LOC108424894,LOC108273448,LOC107669230,LOC107758434 coding upstream 268878 306356 ~ 337153 (-)
LOC103038367 NA coding upstream 318172 355650 ~ 365154 (-)
G33270 NA non-coding upstream 189519 226997 ~ 231863 (-)
G33272 NA non-coding upstream 202679 240157 ~ 270391 (-)
G33277 NA non-coding upstream 237572 275050 ~ 276680 (-)
G33286 NA non-coding upstream 316722 354200 ~ 354841 (-)
G33289 NA non-coding upstream 332249 369727 ~ 372765 (-)
LOC111192416 NA other upstream 351956 389434 ~ 401312 (-)
G33675 NA other upstream 1773108 1810586 ~ 1812622 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 1984593 2022071 ~ 2042303 (-)
G33823 srcap other upstream 2131545 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 2157279 2194757 ~ 2196095 (-)

Expression


Co-expression Network