dmc1 (dmc1)


Basic Information

Item Value
gene id dmc1
gene name dmc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17391730 ~ 17396057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251248.3
atatagaAAGCCTATTTTGAAGATGTTTATGatgaattaagtattttagctagttagctagttaactaacctGGCCCGCAGTTAGCCAGAGCACTTTGTAAGGTGTGGTGTGATTAGTGTCAAAGAAATAGCAAATTAAATGTCTGGACGACAGAAGAGtatgaAGTCAGTGGAGGACCAGGTGGTGGAAGATGAGGCAGGGTATCAGGATGATGAGGAATCTTTCTTCCAAGACATTGATCTACTTCAGAAGTATGGGATTAACATGGCTGATATCAAGAAGCTAAAGTCTGTGGGAATATGTACAGTAAAAGGGATCCAGATGACAACACGGCGTGCACTCTGCAATGTTAAAGGCTTGTCTGAAGCAAAAGTGGACAAGATAAAGGAAGCTGCTGGGAAGTTGTTGATCTCTGGATTTCAGACAGCTTCTGAGTACAGTATGAAAAGAAGACAGGTGTTCCATATCACAACAGGCAGTCAGGAGTTTGAtaaacttCTTGGAGGGGGAATAGAGAGCATGGCAATTACTGAAGCCTTTGGAGAGTTCAGAACTGGAAAGACacaactctctcacacactgtgtGTTACCGCTCAGCTTCCCGGTGAGGATGGGTACACTGGAGGGAAAATCATTTTCATCGACACTGAAAACACTTTTCGCCCAGACAGGCTAAAGGACATTGCAGACAGATTCAATGTGGATCATGAAGCTGTGCTTGATAATGTGCTGTATGCCCGAGCCTATACCAGTGAACATCAGATGGAGCTATTAGACTTTGTTGCTGCTAAATTTCATGAAGAAGCAGGGGTCTTTAAACTGTTGatCATAGACTCCATCATGGCTCTCTTTCGGGTGGACTTCTCTGGAAGAGGTGAGCTGGCAGAGAGACAGCAGAAACTGGCACAGATGCTCTCAAGGCTTCAAAAAATCTCTGAAGAGTACAACGTTGCAGTGTTTGTGACCAATCAGATGACAGCAGACCCAGGAGCTGGGATGAcATTTCAGGCAGATCCCAAAAAGCCCATAGGAGGACACATCTTGGCGCATGCCTCCACTACTCGTCTAAGTTTGAGGAAAGGACGTGGTGAAATGAGAATTGCCAAAATATTTGATAGCCCCGACATGCCAGAAAATGAAGCCACTTTTGCCATAACACCTGGAGGAGTAGCAGATGCCAAGGAGTAAAGGGACCACTCTGTGTCCTACACACAGGGTTAAATAAGATTTAATAAATTTAGGTTAACACACATGTaatcttaatatttatttatttatttatttattaatagtttacaGATAATCTGGTTCTTTTTATGCATTAGGGTAAAGTTTGATGTCATTTCAGCATTGATTGTGTACTGAGCTATGCTTGATGTTTTTCAATAAACTGTTGGAACTGTTGGTTACTTAGTA
>XM_022669226.1
AAATTACAGAGGAGGCGGAAAGGAGCACCGGGAGCTGAGAGAGAGCTATTCAGCATAACTAACGCTATAGTACTTTAGTCAGGCATTTATATTCTCCtatttaaacactgctttttaaGCGATTttcatttaaagtatgaAGTCAGTGGAGGACCAGGTGGTGGAAGATGAGGCAGGGTATCAGGATGATGAGGAATCTTTCTTCCAAGACATTGATCTACTTCAGAAGTATGGGATTAACATGGCTGATATCAAGAAGCTAAAGTCTGTGGGAATATGTACAGTAAAAGGGATCCAGATGACAACACGGCGTGCACTCTGCAATGTTAAAGGCTTGTCTGAAGCAAAAGTGGACAAGATAAAGGAAGCTGCTGGGAAGTTGTTGATCTCTGGATTTCAGACAGCTTCTGAGTACAGTATGAAAAGAAGACAGGTGTTCCATATCACAACAGGCAGTCAGGAGTTTGAtaaacttCTTGGAGGGGGAATAGAGAGCATGGCAATTACTGAAGCCTTTGGAGAGTTCAGAACTGGAAAGACacaactctctcacacactgtgtGTTACCGCTCAGCTTCCCGGTGAGGATGGGTACACTGGAGGGAAAATCATTTTCATCGACACTGAAAACACTTTTCGCCCAGACAGGCTAAAGGACATTGCAGACAGATTCAATGTGGATCATGAAGCTGTGCTTGATAATGTGCTGTATGCCCGAGCCTATACCAGTGAACATCAGATGGAGCTATTAGACTTTGTTGCTGCTAAATTTCATGAAGAAGCAGGGGTCTTTAAACTGTTGatCATAGACTCCATCATGGCTCTCTTTCGGGTGGACTTCTCTGGAAGAGGTGAGCTGGCAGAGAGACAGCAGAAACTGGCACAGATGCTCTCAAGGCTTCAAAAAATCTCTGAAGAGTACAACGTTGCAGTGTTTGTGACCAATCAGATGACAGCAGACCCAGGAGCTGGGATGAcATTTCAGGCAGATCCCAAAAAGCCCATAGGAGGACACATCTTGGCGCATGCCTCCACTACTCGTCTAAGTTTGAGGAAAGGACGTGGTGAAATGAGAATTGCCAAAATATTTGATAGCCCCGACATGCCAGAAAATGAAGCCACTTTTGCCATAACACCTGGAGGAGTAGCAGATGCCAAGGAGTAAAGGGACCACTCTGTGTCCTACACACAGGGTTAAATAAGATTTAATAAATTTAGGTTAACACACATGTaatcttaatatttatttatttatttatttattaatagtttacaGATAATCTGGTTCTTTTTATGCATTAGGGTAAAGTTTGATGTCATTTCAGCATTGATTGTGTACTGAGCTATGCTTGATGTTTTTCAATAAACTGTTGGAACTGTTGGTTACTTAGTA

Function

symbol description
dmc1 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Predicted to be involved in DNA recombination and chromosome organization involved in meiotic cell cycle. Predicted to act upstream of or within DNA repair and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in ovary and testis. Orthologous to human DMC1 (DNA meiotic recombinase 1).

NR:

description
meiotic recombination protein DMC1/LIM15 homolog isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10872 DMC1; meiotic recombination protein DMC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251248.3 True 1417 mRNA 0.42 14 17391730 17396057
XM_022669226.1 False 1393 mRNA 0.42 14 17392006 17396057

Neighbor

gene id symbol gene type direction distance location
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding upstream 1305 17385894 ~ 17390425 (+)
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding upstream 17608 17358723 ~ 17374122 (+)
LOC103024972 csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422 coding upstream 33137 17343937 ~ 17358593 (+)
LOC103027934 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063 coding upstream 144217 17241694 ~ 17247513 (+)
slc16a8 slc16a8,LOC107197668 coding upstream 151098 17237424 ~ 17240632 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding downstream 1096 17397153 ~ 17409934 (+)
LOC111188179 NA coding downstream 27628 17423685 ~ 17424194 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding downstream 87862 17483919 ~ 17491064 (+)
g6pc3 NA coding downstream 125440 17521497 ~ 17534277 (+)
pagr1 pagr1,LOC107708911 coding downstream 400777 17796834 ~ 17802617 (+)
G37001 NA non-coding upstream 167323 17224041 ~ 17224407 (+)
G37000 NA non-coding upstream 168030 17223335 ~ 17223700 (+)
G36998 NA non-coding upstream 168855 17222400 ~ 17222875 (+)
G36983 NA non-coding upstream 219105 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 221874 17169351 ~ 17169856 (+)
G37055 NA non-coding downstream 71900 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 72423 17468480 ~ 17468772 (+)
G37058 NA non-coding downstream 74267 17470324 ~ 17470774 (+)
G37060 NA non-coding downstream 79361 17475418 ~ 17475771 (+)
G37066 NA non-coding downstream 113360 17509417 ~ 17509619 (+)
tnrc6b tnrc6b other upstream 50838 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 109499 17250981 ~ 17282231 (+)
cby1 cby1 other upstream 157171 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 186697 17201497 ~ 17205033 (+)
sun1 NA other upstream 350773 17000382 ~ 17040957 (+)
LOC103045739 LOC103045739 other downstream 309622 17705679 ~ 17708597 (+)
G37098 NA other downstream 319072 17715129 ~ 17715992 (+)
G37099 NA other downstream 322174 17718231 ~ 17719376 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 461860 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 556523 17952580 ~ 17960304 (+)

Expression


Co-expression Network