tomm22 (tomm22,LOC107554024,LOC107584213,LOC107692102)


Basic Information

Item Value
gene id tomm22
gene name tomm22,LOC107554024,LOC107584213,LOC107692102
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17385894 ~ 17390425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251249.3
GTGAGGACCTGCTTTACTCCGCGCACATGTAACCGAGTTGACCTCCGGCTGGAGCTCCGCAGTTCAGATTCATCGCCTGCCAACAGCTCTAAAACACACAGGCGACCGCATCGCCCCGTAGCTGCGCTGTGTGAACTGTCGCTGCGCTGGTCTTAGCGCGGGTTAGTGGGAGTGTGtgagatcagtgtgtgtgagctgtgtgtgcGGGGATGCAGGCGCTGTCTCCAGACGCGGGGCCTGTGGACACACGGCCTCATGAGGAAGACATCGAAGGAGACGATGAAGACGAAGAGCTGGATGAGACCATGCTGGAGAGGCTGTGGGGACTGACTGAGATGTTTCCAGACACCCTGCGGTCAGCAGCTGAAGTATCTGCACAGTGCTCACTGTCTGTAGCCAAGAAACTTTACAGTTTTTCCCGCAGTGCACTGTGGGTGGGCACCACTTCCTTTATGATTCTGGTTCTTCCAGTTGTGTTTGAAACAGAGCGACTACAGCTTGAACAACAACAGCTACAACAACAGAGACAGATTCTGTTGGGCCCAAATGCTGGCATGTCTGGAGGAATGTCCGGAATGATGCCCCCTGCTCCTGGAAAGCTCTGAAGAAAAATGTCCAGCACTGTCTTTACGCTGCAGTTCACAGGGGACCTggaaaagaaacacagagagagggcGAACTGGGGGGGAGAGAACGAGGAGGTGGATGTCGGTCAACACACTGCAGGACTTAATTGGTTGAACATGGGAGGAAATGTGTCCTTTCTGAAGAGCAGcaaaatgtgtttctttctatatctctctcactctgtgtcCAGCCTACACTTCTGAGCACTGACAGTTTgagttcctttttttattttatagctgTGTCATTACATCTCTCATATTTCTTTCTGAAAGTAAAATGGGTATTTCTCATTCTTTAGTAAAAGCAAGTTTGTCTGCAGTAAGATGTTCATGTTAACATGTTTAAATGGGTGTTGCATTATAAATGTTCGTTATGAACATTTTCTTAATGGATTACAAAGACCAGCTCTGAAAGACTCAAACATTCACATGTTTAGTTGTTGCGATTGTCCTGCTTGTAAGTGTTAAAGCTTGGTAaaattactgtttaccaacagtCTCCTTTACAAATATGTTTTGTAAAGGGGAATTCCACACATTCTTTTACGTAATCTAAGCATACTTTCATTAGTGACATATTAACACTTACTAATGACACATACTGGTTTTATATAAACTGCTCCACTTGTAAGACAGAAATTGGAGTCAGCTACAGCACCAAGATATTGCAAGAAAGGGTTACAAATACATAGTTCTTTCCTGCTGGAGACCTTGAGATCCATACTTTCAATGCTTAACGGTCATATCAAACCACCAAGTTGTTATTTTAGGGATTGAATTATGCAGACATTTAGTAAAAATGTTGGAATTCCCCTTTGTCATCATCTAAAGGAAACACCATACATGCAATACAATGAGTAATGGATCACATTAAAGTTCACATGGATCAGGTTTAGCAACTGCACAACATTTATGGCTTGTAACTGTTTTTCATGGAAAGAGGAACAAAAGAGTTGTCACAAGCATGATGTTAGTGTCAGACTTACTGACCTAGTGGAAACACGGACTTATAAACACTTGTTAAGTAAACTTAAGTGTTTGCATGTGCTTGTAATGCTAAACCTGTACATTGTTTAAGCTTTGTAAGGACACTGCATTTGAGTTTTATGCATTTGTATAAATTCTTTAACATCAAAACTATATAATGGCAATTTTTCATGTCAATCTCTCCCAAGAAGGTCTTTGTATATTCAACATGTCTAAAGGaataaaggaaaacaaacaTG

Function

symbol description
tomm22 Acts upstream of or within liver development. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in EVL; digestive system; epidermis; notochord; and periderm. Orthologous to human TOMM22 (translocase of outer mitochondrial membrane 22).

NR:

description
mitochondrial import receptor subunit TOM22 homolog

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0001889 liver development biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K17769 TOM22; mitochondrial import receptor subunit TOM22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251249.3 True 1855 mRNA 0.42 4 17385894 17390425

Neighbor

gene id symbol gene type direction distance location
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding upstream 11772 17358723 ~ 17374122 (+)
LOC103024972 csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422 coding upstream 27301 17343937 ~ 17358593 (+)
LOC103027934 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063 coding upstream 138381 17241694 ~ 17247513 (+)
slc16a8 slc16a8,LOC107197668 coding upstream 145262 17237424 ~ 17240632 (+)
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding upstream 236546 17132606 ~ 17149348 (+)
dmc1 dmc1 coding downstream 1305 17391730 ~ 17396057 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding downstream 6728 17397153 ~ 17409934 (+)
LOC111188179 NA coding downstream 33260 17423685 ~ 17424194 (+)
tmem101 tmem101,LOC107708986,LOC107693682 coding downstream 93494 17483919 ~ 17491064 (+)
g6pc3 NA coding downstream 131072 17521497 ~ 17534277 (+)
G37001 NA non-coding upstream 161487 17224041 ~ 17224407 (+)
G37000 NA non-coding upstream 162194 17223335 ~ 17223700 (+)
G36998 NA non-coding upstream 163019 17222400 ~ 17222875 (+)
G36983 NA non-coding upstream 213269 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 216038 17169351 ~ 17169856 (+)
G37055 NA non-coding downstream 77532 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 78055 17468480 ~ 17468772 (+)
G37058 NA non-coding downstream 79899 17470324 ~ 17470774 (+)
G37060 NA non-coding downstream 84993 17475418 ~ 17475771 (+)
G37066 NA non-coding downstream 118992 17509417 ~ 17509619 (+)
tnrc6b tnrc6b other upstream 45002 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 103663 17250981 ~ 17282231 (+)
cby1 cby1 other upstream 151335 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 180861 17201497 ~ 17205033 (+)
sun1 NA other upstream 344937 17000382 ~ 17040957 (+)
LOC103045739 LOC103045739 other downstream 315254 17705679 ~ 17708597 (+)
G37098 NA other downstream 324704 17715129 ~ 17715992 (+)
G37099 NA other downstream 327806 17718231 ~ 17719376 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 467492 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 562155 17952580 ~ 17960304 (+)

Expression


Co-expression Network