LOC103024972 (csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422)


Basic Information

Item Value
gene id LOC103024972
gene name csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17343937 ~ 17358593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251255.3
CAGTGCGCTGGGATACAAAACAAGGCAGGCGGGCGGGCGGTCGGTCGGGCGGCGGGCAGGCAGGGCTCTCACTGGCTCCGTAACGCAAGTAGGTCAGTCCGAGTGGCGGCGGTTTGGAGCGGAGACTTTAGGACCCCTAAAGAGACGCGGTGAATCAACAACATCCCTCTGGAATGAACCGTCTAAAAGCCCACTGCCACCCCTCGCTCTCCAGGGTCCTGACCGTGCAGCTCCGCCACTCctccaccagcaccaccacctTCTCCGCGGCAGgCAACTTTTAGAAAGAAATCATGGAGTTACGAGTTGGAAACAAGTACCGCCTTGGGCGGAAAATCGGAAGCGGCTCGTTTGGGGACATCTACCTTGGTGCGAACATTACGTCAGGAGAGGAGGTGGCTATCAAGCTGGAGAGTGTGAAGACTAAGCATCCCCAGCTGCACATCGAGAGCAAATTCTACAAGATGATGCAGGGAGGAGTGGGTATTCCTTCCATCAAGTGGTGTGGCGCAGAGGGCGATTACAACGTAATGGTGATGGAGCTGCTTGGTCCCAGTCTGGAGGATCTGTTCAACTTCTGCTCAAGGAAATTCACCCTTAAGACGGTGCTGCTTCTCGCAGACCAGATGATCAGCCGTATTGAATACATCCACTCCAAGAATTTCATTCACAGAGACATCAAACCTGATAACTTCTTGATGGGCCTCGGCAAGAAGGGCAATCTGGTCTATATCATTGACTTCGGCCTGGCCAAGAAGTACCGCGACGCTCGCACACATCAGCACATTCCCTACCGTGAGAATAAGAACCTGACTGGCACCGCCCGCTACGCCTCTATTAACACTCACCTGGGCATCGAGCAGTCTCGGCGGGATGACCTGGAGTCTCTTGGTTATGTGCTCATGTACTTCAACCTGGGCTCTCTACCCTGGCAAGGCCTGAAAGCCGCCACCAAACGTCAGAAATACGAGCGCATCAGTGAGAAGAAGATGTCTACCCCTATTGAAGTGCTTTGCAAGGGCTATCCATCTGAGTTCTCCACGTACATGAACTTCTGCCGCTCCCTGCGATTTGATGATAAGCCCGATTACTCCTACCTGAGACAGCTGTTCAGAAACCTCTTCCACAGACAGGGTTTCTCCTATGACTACGTCTTCGACTGGAACATGTTGAAATTCGGATCCAGCAGGACGgcagaggagaaagagaaggaacagagaggaggagagggggaGGAAAGGGATGAGAGAACCGGAGGGCCTCAGGGTTCTGCTGCCCGCGCTCTGCCATCTGGCCCCAATGTGCCAGCACCCAACAGAGTCCGTAACGGTCCTGACCCGGCCGGCTCTGCTCCAGCCTCACGTGTCCCGCAGTCTGGGAACGCATCTCCCAGAGCAGGGCGGGGGGCTGAGCGGGAGAGGAGAGTGTGTCTGCGCCTTCACCGGGGGGCTCCAGCTAACGCCTCCCCTGATCTCCCACTGCGCCATGATCAGATACGCATCACACCcccacagGTCAGTGTGCCGTTTGAGCACATGGGGAAGTGAGCTTGGATCTTCTGTCATTTATTCTTTTCTAGGAGGATTTAAACAAACAACTCCCCTAAAGCATTTGTATTCATCTTTCTATATAAGTCAGTGGGGGCGAGGAAACAGAAGTTGGGGAGAGGGGCAGAAAGTAAGTAACTTCTCTGTTGCAATGGACAAAGAGATCCACAACCCGGCTGCTCTGGAATGCTGAAGGTTTCTGGGGGATTTGGATGATGAGACATAAATGGTGAACTGGCATGACTCAACTATGGACAAGAGAAGTTTGGATCACAAGTCTCAGGCATAGAAATGATTACTGGAAATGAAAACTTTTTGCCCACAATGTGACTGTTATTCCTGTGTGGTCTGAAGAACAGATGCTACGAAAGACATGGAATAACTTCTTGGATTGTTCAAATTGATTGTTTATTAAGTGTGAGTCCAAATAAATGTATCACTCGCACTCTTACTTTTAACGCACACAGAAGTGTTGTACGTTGTCATACATGCTGATGTAGATGGTTTAGTGGaaagcatcattttttttatgtttgaacATATCGTATGCACAAGCTAAGAATCTTAACAGTGCGTTCAGTCGAACTTTCAGTGGTCGCTTTATTAGCTGGAGATTGGACTAATCATGCAGCgaaacattaaagaaaaaattcTCCATTTGCATAGCATGGACTGACATTTACTGACATTTACCAAGATGTTAACCAGACCAGAGGTTACAGTCAACCGaactaaaaatcaaaataacaTCCCAAACATCACTGCTGGCCTATATGTCTATATGTCAGATCCATAGAAATATATATGGCATATAAAGTGGAGTTAATCTAAAGAGGTATGTACTGGCATGTTTGGCCATGGGACCcagatttataaataaattaatatgttaCAATAATCTGATAAACTGATGAGTTGTTCTGGAAAACACAGAAGTTAGTGGTTTCCAGCCTTGCACAACCCCTACACTataattttcagtgttttcatgaTCTAATACAACCTCTCCAACTTATAAAACTTAGGAATACTTTGTAATTTAGCTAATTAGTTGGAAAGATGTGTTAGAGCATTAATGTGCAGAATGGGTCACTGAATGTGCATACTTGGAAACCACTGATGGAAGTTTAAACTTGCATTTTTCTGCAATATTAAAGTCATTCAGAGTGTATAAACAAGTCATTCAGATTTATTCTCTATTAGTTCTGAAATAAGGCTTTggcctaaaatgtatttttaaggaGAATACAAATTTTCATATACAGTTTGTGCATGCTTCTCAAAACAGGCAAAATgcatctaaaatatttaattgattaaatatttaatattattaaaaatagaaaacattCTACTGTAAAATCTACTAGGCCACCATTTTTGTTGCACCACAGATTAAACTAGAATATCACCCCAGAGAAGAAGTACACCAAATGTCTTATTTCCAGCAGTGTCACAACAGAAACTCTGCTCTTAAGggactttaatctatttttttcctacagtatgtatatctatatgtatattatgatatatacaTCTTCATTTGGCTTACACATGACTGTCATTTGTAATAGTGCTTGACATGACTTTTaaacattatacattattttttcagCATTTCATATTTACAGTCAGagttcatttaaaatacatttgcatATGGTCTTCAAAACAgccactttacaggagagagggaAAATGTAACTTtgaatagaagtcaatgtaaaaaaaaagtttatttcaggtatttttttgagaatttctattggtccattcatcaagaaattttgacacagtgtaaaatccacaaaaacagagaaataaaaatacaaaaataaggtaATATCATGCAGTAGTACaatttgatataaaaaatagaaacatacAAATTTTCAACAGCACATAAAACCCAGGTTCCAACCAACACTGCAGTTTAAAGAAATTCGATAGAATTTATTTTCCCCacaattcattaattaattcaccTGAATGACTTTATCATCTTAATGATTGTCTTATTCAGAAATTCAGAGATGATgagtaaaatgataaatgatgttGGTGTACTCCCTCTTTAACAGAGTTTAATAAAGACTTTCAGCAGTA

Function

symbol description
csnk1e Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including peptidyl-serine phosphorylation; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; eye; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to several human genes including TPTEP2-CSNK1E (TPTEP2-CSNK1E readthrough).

NR:

description
casein kinase I-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08960 CSNK1E; casein kinase 1, epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251255.3 True 3656 mRNA 0.43 11 17343937 17358593

Neighbor

gene id symbol gene type direction distance location
LOC103027934 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063 coding upstream 96424 17241694 ~ 17247513 (+)
slc16a8 slc16a8,LOC107197668 coding upstream 103305 17237424 ~ 17240632 (+)
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding upstream 194589 17132606 ~ 17149348 (+)
LOC103032149 NA coding upstream 212224 17123605 ~ 17131713 (+)
eef2k eef2k coding upstream 227929 17097309 ~ 17116008 (+)
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding downstream 130 17358723 ~ 17374122 (+)
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding downstream 27301 17385894 ~ 17390425 (+)
dmc1 dmc1 coding downstream 33137 17391730 ~ 17396057 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding downstream 38560 17397153 ~ 17409934 (+)
LOC111188179 NA coding downstream 65092 17423685 ~ 17424194 (+)
G37001 NA non-coding upstream 119530 17224041 ~ 17224407 (+)
G37000 NA non-coding upstream 120237 17223335 ~ 17223700 (+)
G36998 NA non-coding upstream 121062 17222400 ~ 17222875 (+)
G36983 NA non-coding upstream 171312 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 174081 17169351 ~ 17169856 (+)
G37055 NA non-coding downstream 109364 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 109887 17468480 ~ 17468772 (+)
G37058 NA non-coding downstream 111731 17470324 ~ 17470774 (+)
G37060 NA non-coding downstream 116825 17475418 ~ 17475771 (+)
G37066 NA non-coding downstream 150824 17509417 ~ 17509619 (+)
tnrc6b tnrc6b other upstream 3045 17297479 ~ 17340892 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other upstream 61706 17250981 ~ 17282231 (+)
cby1 cby1 other upstream 109378 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 138904 17201497 ~ 17205033 (+)
sun1 NA other upstream 302980 17000382 ~ 17040957 (+)
LOC103045739 LOC103045739 other downstream 347086 17705679 ~ 17708597 (+)
G37098 NA other downstream 356536 17715129 ~ 17715992 (+)
G37099 NA other downstream 359638 17718231 ~ 17719376 (+)
G37131 taok2,LOC108425925,LOC108273910 other downstream 499324 17857917 ~ 17863066 (+)
G37152 LOC108425993 other downstream 593987 17952580 ~ 17960304 (+)

Expression


Co-expression Network