LOC103025298 (LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211)


Basic Information

Item Value
gene id LOC103025298
gene name LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17319206 ~ 17325915 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251256.3
AGGAATCTTCGTTGAATTTAGCTACAGCGGGGAGCAAAATAACGAAAGACAGTCACAGACAAGCAGACGGTGTGCAGAAGCTAGcttgatgagctagctaacgctatCTAATGTTAGCCAAGCTAGATGGTACAACTCGCGTTCAGCAGCTGGCTATGCTAATCTAGCTAGCGTTACTAGCGTTACAATCCCCTGTCAAACAGACGCGCCTCGCCCAAACATTTTCACCGCCTTATCTCCCAAACCAGCGGCGGGCTCTCTGTGTTAATGCTGATATTTAAAACCTGCTCGCAAACTGAACTTTGGTATAAGTATGGGTCCACgaaagagaggagaaaggaagagaaaagcaGAAGAAAATTCTGCTCAAGATGAAGAGGTTGCAGATACAAGTGGAGCAGGAAAATCATCTGAACGCAGTGCAGGTAAAGTGGTGAGCGGAAAGAAGAGCCGGACTAAAGGAGGAAAGAAATACATTGGTGCTCATGTCTCTATATCAGGAGGCATATGGAAAGCAGTGGAAGACAGTGTGGAGCTGGGGGGACGCAGCTTTGCCTTATTTCTGGGCTCCCAGCGCACCTGGCAAAGGCCGGCCCTCGATCAATCTGCTGCAGTAAAATTCCAGAAGGCTTGTGCTCAGCATGGATTTGACCCGACACATATCCTTCCTCATGGATCTTACCTGATGAACTGCGGCTCACCCAAGCAAGATGTGTTTACTAAGAGCCAGGCCATGCTGGTCGATGAACTAAGTCGCTGCAGTGCTTTGGGCCTCACTCAGTTTAATTTCCACCCTGGGGCCTCCATTgactccagcacagagaagtgCATCGAGAGGATTGCCCAAGCTATAAACCACGCTCACAATCAAACATCTGCTGTCATCACTGTGCTTGAAAATATGAGTGGACAGGGGAGTACTGTAGGCGGACAGTTTAATGAGCTGAAGAGAATAATTGATCGCGTTCGAGACAAGACACGTGTTGGAGTGTGTCTGGACACATGTCATGCATTTGCCGCAGGTTATGACATTTCAAAGGCTGGAGGAGTGAAATCTATGCTTGATCAGTTTGATCAGGAGGTTGGGTTGCATTACCTGAGAGCATTTCATCTCAATGACTCAAAAGgtatATTGGGCTGTCACTTGGACCGCCATGAGGACATAGGGTGTGGGAATATTGGGATCTCAGCTTTCCGAGACATTGTGAATGAGCCTCGCCTGGACAACATCCCTCTCATACTTGAGACTCCCGGACGCCCAGGTTTTGAGTACGCTGAACAAATAAAGCTTCTATATTCTCTTTGTGAGGACTAGAAGACCCTGAGGACTCTTCGCAAGGCAAAGATAAAGACAAGGCAAAAGCCTTAATCCTTCTTTTTGTTCAATTCTGTTCATAACCAGCAATCTTTTGATCTTATATTTTGTTCCTGTTACAACAAATTACATTGTTgaatttaaataattcagataTGTTCAGTGTGGCACTGTATGAATTGTATTGTTTATCAGCAGAGGGAGCCGTTACCCAACCAAAATCCTTGTGTGAGTTTGACTGAGTAAAACAGAACACGTCCACTTTC
>XM_007251258.3
CGGTAGGTTAGCGTTAAGTTCGCTTTATCGTGTGAATCGTCTCGTATATTTTGACACTACTGCCTCTCCTCCATTCACCCGCCCATTTCCTTCTGAGCTTGGCATTTGGAGCAACAAACTGAACTTTGGTATAAGTATGGGTCCACgaaagagaggagaaaggaagagaaaagcaGAAGAAAATTCTGCTCAAGATGAAGAGGTTGCAGATACAAGTGGAGCAGGAAAATCATCTGAACGCAGTGCAGGTAAAGTGGTGAGCGGAAAGAAGAGCCGGACTAAAGGAGGAAAGAAATACATTGGTGCTCATGTCTCTATATCAGGAGGCATATGGAAAGCAGTGGAAGACAGTGTGGAGCTGGGGGGACGCAGCTTTGCCTTATTTCTGGGCTCCCAGCGCACCTGGCAAAGGCCGGCCCTCGATCAATCTGCTGCAGTAAAATTCCAGAAGGCTTGTGCTCAGCATGGATTTGACCCGACACATATCCTTCCTCATGGATCTTACCTGATGAACTGCGGCTCACCCAAGCAAGATGTGTTTACTAAGAGCCAGGCCATGCTGGTCGATGAACTAAGTCGCTGCAGTGCTTTGGGCCTCACTCAGTTTAATTTCCACCCTGGGGCCTCCATTgactccagcacagagaagtgCATCGAGAGGATTGCCCAAGCTATAAACCACGCTCACAATCAAACATCTGCTGTCATCACTGTGCTTGAAAATATGAGTGGACAGGGGAGTACTGTAGGCGGACAGTTTAATGAGCTGAAGAGAATAATTGATCGCGTTCGAGACAAGACACGTGTTGGAGTGTGTCTGGACACATGTCATGCATTTGCCGCAGGTTATGACATTTCAAAGGCTGGAGGAGTGAAATCTATGCTTGATCAGTTTGATCAGGAGGTTGGGTTGCATTACCTGAGAGCATTTCATCTCAATGACTCAAAAGgtatATTGGGCTGTCACTTGGACCGCCATGAGGACATAGGGTGTGGGAATATTGGGATCTCAGCTTTCCGAGACATTGTGAATGAGCCTCGCCTGGACAACATCCCTCTCATACTTGAGACTCCCGGACGCCCAGGTTTTGAGTACGCTGAACAAATAAAGCTTCTATATTCTCTTTGTGAGGACTAGAAGACCCTGAGGACTCTTCGCAAGGCAAAGATAAAGACAAGGCAAAAGCCTTAATCCTTCTTTTTGTTCAATTCTGTTCATAACCAGCAATCTTTTGATCTTATATTTTGTTCCTGTTACAACAAATTACATTGTTgaatttaaataattcagataTGTTCAGTGTGGCACTGTATGAATTGTATTGTTTATCAGCAGAGGGAGCCGTTACCCAACCAAAATCCTTGTGTGAGTTTGACTGAGTAAAACAGAACACGTCCACTTTC
>XM_007251259.3
TTAATTTATACCCACACTACAAACCAATGAGTCGCGGCTTTAAACCGTAATGTCAAGTAAGGCATTGGGGGCACCTACAGACCCCGATCATTTGAGGGGGGACACACAAAAACACCGGATTCCCTGAGCGCATCATTTAAACTGTAGTCCTCACTCGGGCGGCGTTAGTAACGCAAACTGAACTTTGGTATAAGTATGGGTCCACgaaagagaggagaaaggaagagaaaagcaGAAGAAAATTCTGCTCAAGATGAAGAGGTTGCAGATACAAGTGGAGCAGGAAAATCATCTGAACGCAGTGCAGGTAAAGTGGTGAGCGGAAAGAAGAGCCGGACTAAAGGAGGAAAGAAATACATTGGTGCTCATGTCTCTATATCAGGAGGCATATGGAAAGCAGTGGAAGACAGTGTGGAGCTGGGGGGACGCAGCTTTGCCTTATTTCTGGGCTCCCAGCGCACCTGGCAAAGGCCGGCCCTCGATCAATCTGCTGCAGTAAAATTCCAGAAGGCTTGTGCTCAGCATGGATTTGACCCGACACATATCCTTCCTCATGGATCTTACCTGATGAACTGCGGCTCACCCAAGCAAGATGTGTTTACTAAGAGCCAGGCCATGCTGGTCGATGAACTAAGTCGCTGCAGTGCTTTGGGCCTCACTCAGTTTAATTTCCACCCTGGGGCCTCCATTgactccagcacagagaagtgCATCGAGAGGATTGCCCAAGCTATAAACCACGCTCACAATCAAACATCTGCTGTCATCACTGTGCTTGAAAATATGAGTGGACAGGGGAGTACTGTAGGCGGACAGTTTAATGAGCTGAAGAGAATAATTGATCGCGTTCGAGACAAGACACGTGTTGGAGTGTGTCTGGACACATGTCATGCATTTGCCGCAGGTTATGACATTTCAAAGGCTGGAGGAGTGAAATCTATGCTTGATCAGTTTGATCAGGAGGTTGGGTTGCATTACCTGAGAGCATTTCATCTCAATGACTCAAAAGgtatATTGGGCTGTCACTTGGACCGCCATGAGGACATAGGGTGTGGGAATATTGGGATCTCAGCTTTCCGAGACATTGTGAATGAGCCTCGCCTGGACAACATCCCTCTCATACTTGAGACTCCCGGACGCCCAGGTTTTGAGTACGCTGAACAAATAAAGCTTCTATATTCTCTTTGTGAGGACTAGAAGACCCTGAGGACTCTTCGCAAGGCAAAGATAAAGACAAGGCAAAAGCCTTAATCCTTCTTTTTGTTCAATTCTGTTCATAACCAGCAATCTTTTGATCTTATATTTTGTTCCTGTTACAACAAATTACATTGTTgaatttaaataattcagataTGTTCAGTGTGGCACTGTATGAATTGTATTGTTTATCAGCAGAGGGAGCCGTTACCCAACCAAAATCCTTGTGTGAGTTTGACTGAGTAAAACAGAACACGTCCACTTTC
>XM_015606326.2
GCTATGTAAGCATGAGGGCGATATTCAGGTGAACCCGTGTCCCGGTTAAGAGGAAAAGTCACGTTCAAGTTACTAAAATAACGTAAAAGCAAACTGAACTTTGGTATAAGTATGGGTCCACgaaagagaggagaaaggaagagaaaagcaGAAGAAAATTCTGCTCAAGATGAAGAGGTTGCAGATACAAGTGGAGCAGGAAAATCATCTGAACGCAGTGCAGGTAAAGTGGTGAGCGGAAAGAAGAGCCGGACTAAAGGAGGAAAGAAATACATTGGTGCTCATGTCTCTATATCAGGAGGCATATGGAAAGCAGTGGAAGACAGTGTGGAGCTGGGGGGACGCAGCTTTGCCTTATTTCTGGGCTCCCAGCGCACCTGGCAAAGGCCGGCCCTCGATCAATCTGCTGCAGTAAAATTCCAGAAGGCTTGTGCTCAGCATGGATTTGACCCGACACATATCCTTCCTCATGGATCTTACCTGATGAACTGCGGCTCACCCAAGCAAGATGTGTTTACTAAGAGCCAGGCCATGCTGGTCGATGAACTAAGTCGCTGCAGTGCTTTGGGCCTCACTCAGTTTAATTTCCACCCTGGGGCCTCCATTgactccagcacagagaagtgCATCGAGAGGATTGCCCAAGCTATAAACCACGCTCACAATCAAACATCTGCTGTCATCACTGTGCTTGAAAATATGAGTGGACAGGGGAGTACTGTAGGCGGACAGTTTAATGAGCTGAAGAGAATAATTGATCGCGTTCGAGACAAGACACGTGTTGGAGTGTGTCTGGACACATGTCATGCATTTGCCGCAGGTTATGACATTTCAAAGGCTGGAGGAGTGAAATCTATGCTTGATCAGTTTGATCAGGAGGTTGGGTTGCATTACCTGAGAGCATTTCATCTCAATGACTCAAAAGgtatATTGGGCTGTCACTTGGACCGCCATGAGGACATAGGGTGTGGGAATATTGGGATCTCAGCTTTCCGAGACATTGTGAATGAGCCTCGCCTGGACAACATCCCTCTCATACTTGAGACTCCCGGACGCCCAGGTTTTGAGTACGCTGAACAAATAAAGCTTCTATATTCTCTTTGTGAGGACTAGAAGACCCTGAGGACTCTTCGCAAGGCAAAGATAAAGACAAGGCAAAAGCCTTAATCCTTCTTTTTGTTCAATTCTGTTCATAACCAGCAATCTTTTGATCTTATATTTTGTTCCTGTTACAACAAATTACATTGTTgaatttaaataattcagataTGTTCAGTGTGGCACTGTATGAATTGTATTGTTTATCAGCAGAGGGAGCCGTTACCCAACCAAAATCCTTGTGTGAGTTTGACTGAGTAAAACAGAACACGTCCACTTTC
>XM_022669221.1
CTGAGCTGTAGCAGAGCAGCCTATTCAACTGATCCAAATCCTGGGATGGACTTTTAGTGTCTGGACCTGGACTGCCCTGTAACTAGCTATCAAACTGAACTTTGGTATAAGTATGGGTCCACgaaagagaggagaaaggaagagaaaagcaGAAGAAAATTCTGCTCAAGATGAAGAGGTTGCAGATACAAGTGGAGCAGGAAAATCATCTGAACGCAGTGCAGGTAAAGTGGTGAGCGGAAAGAAGAGCCGGACTAAAGGAGGAAAGAAATACATTGGTGCTCATGTCTCTATATCAGGAGGCATATGGAAAGCAGTGGAAGACAGTGTGGAGCTGGGGGGACGCAGCTTTGCCTTATTTCTGGGCTCCCAGCGCACCTGGCAAAGGCCGGCCCTCGATCAATCTGCTGCAGTAAAATTCCAGAAGGCTTGTGCTCAGCATGGATTTGACCCGACACATATCCTTCCTCATGGATCTTACCTGATGAACTGCGGCTCACCCAAGCAAGATGTGTTTACTAAGAGCCAGGCCATGCTGGTCGATGAACTAAGTCGCTGCAGTGCTTTGGGCCTCACTCAGTTTAATTTCCACCCTGGGGCCTCCATTgactccagcacagagaagtgCATCGAGAGGATTGCCCAAGCTATAAACCACGCTCACAATCAAACATCTGCTGTCATCACTGTGCTTGAAAATATGAGTGGACAGGGGAGTACTGTAGGCGGACAGTTTAATGAGCTGAAGAGAATAATTGATCGCGTTCGAGACAAGACACGTGTTGGAGTGTGTCTGGACACATGTCATGCATTTGCCGCAGGTTATGACATTTCAAAGGCTGGAGGAGTGAAATCTATGCTTGATCAGTTTGATCAGGAGGTTGGGTTGCATTACCTGAGAGCATTTCATCTCAATGACTCAAAAGgtatATTGGGCTGTCACTTGGACCGCCATGAGGACATAGGGTGTGGGAATATTGGGATCTCAGCTTTCCGAGACATTGTGAATGAGCCTCGCCTGGACAACATCCCTCTCATACTTGAGACTCCCGGACGCCCAGGTTTTGAGTACGCTGAACAAATAAAGCTTCTATATTCTCTTTGTGAGGACTAGAAGACCCTGAGGACTCTTCGCAAGGCAAAGATAAAGACAAGGCAAAAGCCTTAATCCTTCTTTTTGTTCAATTCTGTTCATAACCAGCAATCTTTTGATCTTATATTTTGTTCCTGTTACAACAAATTACATTGTTgaatttaaataattcagataTGTTCAGTGTGGCACTGTATGAATTGTATTGTTTATCAGCAGAGGGAGCCGTTACCCAACCAAAATCCTTGTGTGAGTTTGACTGAGTAAAACAGAACACGTCCACTTTC
>XM_022669222.1
ACATCACCATCTTAGTTAGTCAGCGTTTAGCCAAGTAGCTAGGTTAGGAAGCGTTAGCTAGATTAACTGTAATTAGCACGAACTGAATTAGCTAGCGTTATTAAACCCTCCAAAGACTCAAGACTTCAGTTCAACTGATCCTATAGCAAGAGAATCCGAACTGGCTGTAACGTTAGCAGTTAACGTGTACGATGTTAATAGCAAACTGAACTTTGGTATAAGTATGGGTCCACgaaagagaggagaaaggaagagaaaagcaGAAGAAAATTCTGCTCAAGATGAAGAGGTTGCAGATACAAGTGGAGCAGGAAAATCATCTGAACGCAGTGCAGGTAAAGTGGTGAGCGGAAAGAAGAGCCGGACTAAAGGAGGAAAGAAATACATTGGTGCTCATGTCTCTATATCAGGAGGCATATGGAAAGCAGTGGAAGACAGTGTGGAGCTGGGGGGACGCAGCTTTGCCTTATTTCTGGGCTCCCAGCGCACCTGGCAAAGGCCGGCCCTCGATCAATCTGCTGCAGTAAAATTCCAGAAGGCTTGTGCTCAGCATGGATTTGACCCGACACATATCCTTCCTCATGGATCTTACCTGATGAACTGCGGCTCACCCAAGCAAGATGTGTTTACTAAGAGCCAGGCCATGCTGGTCGATGAACTAAGTCGCTGCAGTGCTTTGGGCCTCACTCAGTTTAATTTCCACCCTGGGGCCTCCATTgactccagcacagagaagtgCATCGAGAGGATTGCCCAAGCTATAAACCACGCTCACAATCAAACATCTGCTGTCATCACTGTGCTTGAAAATATGAGTGGACAGGGGAGTACTGTAGGCGGACAGTTTAATGAGCTGAAGAGAATAATTGATCGCGTTCGAGACAAGACACGTGTTGGAGTGTGTCTGGACACATGTCATGCATTTGCCGCAGGTTATGACATTTCAAAGGCTGGAGGAGTGAAATCTATGCTTGATCAGTTTGATCAGGAGGTTGGGTTGCATTACCTGAGAGCATTTCATCTCAATGACTCAAAAGgtatATTGGGCTGTCACTTGGACCGCCATGAGGACATAGGGTGTGGGAATATTGGGATCTCAGCTTTCCGAGACATTGTGAATGAGCCTCGCCTGGACAACATCCCTCTCATACTTGAGACTCCCGGACGCCCAGGTTTTGAGTACGCTGAACAAATAAAGCTTCTATATTCTCTTTGTGAGGACTAGAAGACCCTGAGGACTCTTCGCAAGGCAAAGATAAAGACAAGGCAAAAGCCTTAATCCTTCTTTTTGTTCAATTCTGTTCATAACCAGCAATCTTTTGATCTTATATTTTGTTCCTGTTACAACAAATTACATTGTTgaatttaaataattcagataTGTTCAGTGTGGCACTGTATGAATTGTATTGTTTATCAGCAGAGGGAGCCGTTACCCAACCAAAATCCTTGTGTGAGTTTGACTGAGTAAAACAGAACACGTCCACTTTC

Function

NR:

description
uncharacterized protein LOC103025298

GO: NA

KEGG:

id description
K01151 nfo; deoxyribonuclease IV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251256.3 True 1581 mRNA 0.46 8 17319206 17325357
XM_007251258.3 False 1404 mRNA 0.46 8 17319206 17325744
XM_007251259.3 False 1463 mRNA 0.46 8 17319206 17325915
XM_015606326.2 False 1379 mRNA 0.45 8 17319206 17324003
XM_022669221.1 False 1380 mRNA 0.46 8 17319206 17324088
XM_022669222.1 False 1491 mRNA 0.45 8 17319206 17325590

Neighbor

gene id symbol gene type direction distance location
LOC103027309 NA coding downstream 30374 17273373 ~ 17288832 (-)
LOC103028243 LOC108431941,LOC107584177 coding downstream 87067 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 106423 17204332 ~ 17212783 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 120369 17187667 ~ 17198837 (-)
LOC103043322 NA coding downstream 149328 17148541 ~ 17169878 (-)
rsl1d1 NA coding upstream 89160 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 105091 17431006 ~ 17438492 (-)
LOC111192380 NA coding upstream 116726 17442641 ~ 17466671 (-)
LOC103024821 LOC108425935 coding upstream 174554 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 184045 17509960 ~ 17517710 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 71753 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 197005 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 203198 17112502 ~ 17116008 (-)
G37213 NA non-coding downstream 208497 17108712 ~ 17110709 (-)
G37206 NA non-coding downstream 227155 17091742 ~ 17092051 (-)
G37254 tnrc6b,LOC107690060 non-coding upstream 9676 17335591 ~ 17337322 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 59926 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 162970 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 227657 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 379819 17705734 ~ 17708605 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 134779 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 256259 17047607 ~ 17062947 (-)
G37183 NA other downstream 300288 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 403921 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1478690 15837105 ~ 15840516 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 48269 17374184 ~ 17381733 (-)
G37290 NA other upstream 107057 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 147995 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 208788 17534703 ~ 17689384 (-)
cntd1 NA other upstream 366582 17692497 ~ 17705023 (-)

Expression


Co-expression Network