LOC103027309


Basic Information

Item Value
gene id LOC103027309
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17273373 ~ 17288832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251265.3
tgtgtgtttcagccCCAGCGGTTCATGGTAAGAGCAGAAGGCTGCCTCagtgggagagtgtgtgtgtcagggtcTGGACGCTCACTGGAATATAACCACATACATGGACTAAAAACAcgtgaataagagagagaagcGCGTTCATATTCACCAGGGACACTGACTGTCAGACCAGCCACACCAGCCACCCACGCAGCCAAAAGCCAAACAGACTGAGGGAGGCCGAGGGGATTGAAAAGAGGGACGAGAGGAGATGGGCGATTAGCCACTAATCCAAGACAAGACCAATCCTTAAGGAGTCGATCTTTTTGGCCCTTGAGACAGACTGTCGTGAAGATTACCGCATTTACTTATTATTGCCTTTAAAATCCTtcgttcttcttttttttttttggccggaGTCGCCTGGATTTGTGGGACTTTAAGCATGGAGAAGGGGAGCCCACGGCCAGGACACAGTGTGTAAATGCAGGGATAAATTAGTGAGCCTTTGTGGGGTGCCCTGGACTCCCCCACTAAAAGAGCACACCACAGCGGGACACTGAGTAAACTGGGATTAAAGCAGTGCACAGTCCGGCTAATTAGTCACGGGAGCTGTGTCTTTATTTTACCAGGATAAAGCAAAGTACTTCAAATGATGTTATGCTCATGATTCAGAGGGCTTTGGGTTTCCACGCTTCGCTGCTTGGTCAGAAAGCGGGCTTGTGGGTGGATGTCACAAGAGGTTTTGTAGGGAGACGCCAGCACAAGACTCTTTATCAACACAGTCTAGAATTGCACAGTTAGTGTTCTGCAAACAGAGGACTTGTTGAAGTGCTGTGGGCTAAATAGAACATCATAGCTGAGCTCTTCACCATATGAGGGCATGAGACCTACTGCCATGTGCCAATAGCACAACTTTAAAGCTCCTCTTTAAAAGAAGAGACGGATAAAATAAAAGGGCCAGGATCTGGAATGCGGGCAAGGCCAAATTAATAGGCCATTTAAAAGCTGACGTAGTCCTGTTGGAGCGGCGTAATAACTCATTAATGAAGTCGAACTAACATGTGTGGGAGGCCAGTCTTGGCAGAAAGCTCGTAAAACACGCAGGCCTGTAAATGTGGGCTACTTTGTCAAAATGTTTAAGGAGCAATGGCCATTATACATTCCAGCTTGAAATAACAGCaaaagaaaacagcagcagGGCATTGtcgaagacttttttttttctttaaaagaagTTGGTGAAGCGAGTCTTTATCTGATACCACTCAGTATCTTGGGTGCTTTTGGCTGTATATAAGCCCATATTTTGAATAAGCTTTAGGCTGCTCTTTGTAAAGAGCTTGGCCTTTTCCAGTTTCTCAGGCTCACTCACAGATTGAGAAACTCCACTTAAGGGGTAGGAGGCTTATTTGCAGCAAGATATATTGCTAATAAATGACCAAGATACTATTTGTTacttgccaaaaaaaaatactccccCCCCTTTTTGATTTAGGGTCCATGACCACGAAGCCATTTGGAATTTGGACACTCGAAGAGCAATGGACTTTAGCCTGGGGAATTTGGCATAGAACATAACCTAGTTTTCCAAAGCCTAGAATCAGCAGGATAACTAACTGTGCAGCAGAAACGTCCCCATTATTTTTGTATCTCAGCACTACCCACTCATACCGCATGCACCACgtcactttctttttttgcacaaaaagaAGCTTGCATATATTTTCTTAACATTTGATCTTCCTCAACACGCAGCGGTGGACGCTCTCAGATTCAAATAGAAGGAGTTCCATGGTTCCAGTTCTGAACCACAAAAGATATCTGCAGCTGGAGCTGGATTTATTTCTGAGCTTGTGTTTTCTGAGCCAGAAACCCCAAAACAACTGCGCGTCCCAGCATCTCTGACCGTATACTCGACCAAGGTTTCCAGGATTGGGGACATGCATATTTTCAACTCGCATCCATCTCAACTGGAGCATTTTGGACATGGACAAGAACCGGCAACAAAAGAGCTATGCGTTTTTCTCATGGAAAAAGCCTTTCTGAGAAACATCTCTCTCAGCTGcagttttttcagttttgctCTGAGGAGCCCTGAGCCAGGCATAGTTTTGCATGAATGGTAATGTGTGGATCATTTCCTGTCTACATTAGGCCAGATTCTTTTCACTGCATAGGAGAAATCCTGAACTGCTGGATTTTTACTGGAATAGCAGAACGTCCAGCTCAAAgtattttgagtgtttttgtttgtttgtttgtttcgtGTGGGTAATTCTCATTGTCAGCCCAGGAAAACGCTGCAGTCATGAACTTGGGTAAGCTGTCAGGACTAAAGGGCCTGGTGTCCCACTCATCAGGCAAGCGCCGCTTTAAGGGTGATTTGACCCCGGAGATGATCAGCCCACCGCTGGGTGACTTCCGCCACACCATGCACGTGGGCAGAGGGGGCGATGTTTTCGGAGACACATCATTCCTTAGCAACCACGGAGGAGCAGGGAATGCTGGAGATGGAGACTCCATCACTGCCTCAGAGAAAAGTGAAGGCTTCTTTTCTCGAACCCTGCGCCATGTCCGCAAAACCCCAGAGAGGCCACGGGGAAGCACCAAAGACCTTTCTCCCCCACCTCCACCCATTTCCCCCATCATAAAGAACGCAATATCTCTCCCTCGTCTGGATGTGGACACGCCCAACGGCTGCCCTGTTAAAGTGCTGTTCCCCAGCACGCCCAAATCACCCGAAGACTCTACATACTCCTATGGTTTGGAGTCTGGTTTTGTCACGCTGCCCCGGTTGTCCCGCACTGAACGTTCACCGCAGGGCAGCTCCCCCACTGGCTGTTCTGCCCAGATCCACCGTGGCTCCATCACTGACAACAACGCCATCCCGTCCTTCTCCTGCCCAGATACCCTCGGCCGCTGTGACTCCATCTCCTCCTTCACTGTGGATCTCGGTCCCTCCCTCATGTCTGAGGTTTTTGGCATGATTGACAGCCCCACTGACCAACAGGAAGTCACTGAAGTCTCTGAGGTTGAGCACGAGCCCAAGGCTCTGTTTGGGTTGTCCAATGGCAAAGCTGGAATTGACCTGGATGCTAAAACGTCACTGGTGGATTCCCTTTTGAGGGAGGATTCTGAGGGCCGGAGCCGCTTGTATGGTGTAGAGTGGGGGCGTGGGGACGTGATGAACAGAGAAACCCCGAAAAGGCCTACAGGTGTGCCTGGTGACCTGGTGCAATCTTACACTGCAGGAGAACACGGCATGGAGGCTGAGAGATTTCAGAAGGCTGCAGATGTGCTGGCACGTCACTACGGCAGCGGGACTCGCAAGAACATTGACATTAGCTGCTCTCAAAAGAGAGGGAATTACACTTACCTGGATGAAGAGGAAGAGATCAAAGTCTAGCCTAAAGAAAGGATGCTCTTGAGattatcaaaaatatttttaaatgatttaatttcatGGTATTAAGACATTAAGATATTTTAAGGATTTAAAAGGATTACAAAACTTAATATGGATACCGAGTGTCTTTTCAGTgtgaatgtgtttaaaatgcaaaatacattttcatggcactctcttcaaaataaaaaataaaataaataataaaaaggaggACCCTAGGATTTgacagaaaaggaaaaagactGTTTTATCATGGCTGTGGATATTATTGAATTTAAAGAGTCAGGCAGTGGCTTAGTGTTTTGTCTAAGGGAGGCATCACACCACACAGTTGAAGTTGTAACACTtgaagtgttaatttaacactgagagtgttgGTTTAGCTCCCAGTGATGCTGAATTGGCAGCAGTTGGAAAATAAGtggtggttgacttcacatgttttggaggaggcatgtgttaatCTTTACCCTCATAGTGTTAGGGACATTAGTAATAATAGAGGAAGTTTATATTAATGAGGATTTGGCTTTCCAAATTGGGAAGGAAATGGGTTAAATTTAGCATTTACCACTGACAAATTTACTGTAGACTTCCTAATGTTAGATTCTGATACTGCAACCTTGAGTGTCGGCTGATGCTGATATCAAATCAACAGCTTGGTTTTTCTCTTCAACTAAGCTGTTAACAACGTATTTGTCTGAATGCACTTTGCCTGTGCTCAAGCTGTGAACAAAATATTCTACTTCCTTATTAAGTCTAGAATACTGGCAAGCAGACTTAAACACGTGTAGGGTTGGGTTATAGGATTAAAATGACTATGTTTTTCCTCCGATATTCGATTCAGTAATTCTGGACATCATTACGACAATGCTGATGCTATTATCAGATTGATACAATCCTAGTTTTATCCACAGCCATGATACAAtacaacatttttcattttaaaaacagaaacttAAAAATTCCTTTTTGTACTTAAGTTGGACTGAGAGCAACAGACATGTAGCTGGAAATGTGTGGTGAATGAGGCATGTATGGAGTCATTGAGTCAGGTGTGGATGGTGCTTTAAAGGGAACAATGAGAGTTGAAAGAATGTAGAATAGATGTTGAAGAATATGatgaatcttttttatttttagtttggaCATGTTGTATGATAATACTTGTTGAAGTGATTGAGTAAGTGatagaaagtcttttttttctcctaattaTAAACATTAGTTATATTCAATAGCCAGATCCCAAAGCCAGACATGAGTGCCTCCTGCCAGAGATACATTCTATACACTTTTATGTGccaggttatatatatatacattatttttttctttctttttaagagCTAAGCTTCTtatagttctgtttttttttttagcatttagcacaatttattaaaccaaactgcattgtttttcttttcaaaaggtatgtttaaaaataacctAAACAATATGAACTATTCCAGAACTTATGGTATACTCTTAATTTTTGCGCCAGTACTCTTGGTGCATTTGAATGgtttattacacatgtattatgCTTCATGTAAACTTTGATTAAGCCTTATTCCAAACAAATATAATGGGAAAgcagttttattaatcaaattatgcTGTGAGCTGTGATTTCTGGGCAAATCAACAGggcaaaaaacatattttttatggtTCTGGAAATTCTGTTTCTCATTTAGTTTATTAGGCAATAAATATTTGCGTCCACAAATAACcaacaaaatcataaaacacTCAAGTTTTGTCATAAGGAAGTCTTTATACAATATTTGTTTGACACACCAAAGTTTTAGATTATAACAGCTTATATGatgtttatataaatttaattttttttactatgacaGAGGAGTTGACTTCTCGATGATGTcatctatactgtatatacacgaATGTGCTCTTTTTGCACAGGAACTACACACAGACCTAATGTATTCTTATAAAAATATcaactgtttctaataaaaaaataaagacaacagtaaaaaa

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0070469 respirasome cellular_component
GO:0004300 enoyl-CoA hydratase activity molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251265.3 True 5404 mRNA 0.42 3 17273373 17288832

Neighbor

gene id symbol gene type direction distance location
LOC103028243 LOC108431941,LOC107584177 coding downstream 41234 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 60590 17204332 ~ 17212783 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 74536 17187667 ~ 17198837 (-)
LOC103043322 NA coding downstream 103495 17148541 ~ 17169878 (-)
trnal-uag_1 NA coding downstream 178047 17095245 ~ 17095326 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding upstream 30374 17319206 ~ 17325915 (-)
rsl1d1 NA coding upstream 126243 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 142174 17431006 ~ 17438492 (-)
LOC111192380 NA coding upstream 153809 17442641 ~ 17466671 (-)
LOC103024821 LOC108425935 coding upstream 211637 17500469 ~ 17504817 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 25920 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 151172 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 157365 17112502 ~ 17116008 (-)
G37213 NA non-coding downstream 162664 17108712 ~ 17110709 (-)
G37206 NA non-coding downstream 181322 17091742 ~ 17092051 (-)
G37254 tnrc6b,LOC107690060 non-coding upstream 46759 17335591 ~ 17337322 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 97009 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 200053 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 264740 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 416902 17705734 ~ 17708605 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 88946 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 210426 17047607 ~ 17062947 (-)
G37183 NA other downstream 254455 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 358088 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1432857 15837105 ~ 15840516 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 85352 17374184 ~ 17381733 (-)
G37290 NA other upstream 144140 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 185078 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 245871 17534703 ~ 17689384 (-)
cntd1 NA other upstream 403665 17692497 ~ 17705023 (-)

Expression


Co-expression Network