LOC103027934 (pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063)


Basic Information

Item Value
gene id LOC103027934
gene name pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC107734239,LOC107690063
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17241694 ~ 17247513 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251267.3
TTCTGCTTTGTTCAACGTGACTCACTCAGGAAGCGGCAACGTTGTTCTTCGAGCACATCCAGCAGTCGAGGGCCTTGAGaacaaaactcatcattttaatataaaataaataaaacactcacAAGAGCTAGATTTAGTTCGCAGGTTTCTCTCTCGCGGTTCCGGACTACGTTAACAATGCCCAGAGGAGGAAAAAAAGGCTACAAAGGTCGTGGCAAACAGTTCAGCAATCCTGAAGAAATTGACCGACAGATGCGAGCACAGAGGGAAAAAgaGGCAAATGGTGGTGTAGAACGTGAAAGTGCTTCAGACTCTGAGGAGGAAAGCAGCAGTGAAGATGAGCAAGACCAAAAGAAGAGTGGAGTGGCAGGATTGATTGAAATCGAGAATCCAAATCGTATCTCccagaaaagcaaaaaagttACAGAAATAGACGACAATGCGCCAAAAGAGCTCTCGCGCAGAGAAAGAGAGGAGATTGAGAAACAGAAAGCAAAGGAGCGCTACATGAAGCTGCATCTAGAGGGGAAGACTGAGCAGGCCAGGGCAGATTTGGCTAGACTTGCTATTATTAAGAAACAAAGAGAAGATGCAgccaaaaaaagagaagaaatgagGAAAGaaAAAGAGGCACAGGAGGCCAAGTCTAAACGTTAGCCTCCTTCCCACCCCTCAGGACAGGGCTTCACTGGGGTGGGAGGGAAGGGACCAAATTAATTAGGGATTCAGCTCAGGGGTGTCCAGGCACACCGTCTTTTCATCCTCCACTGGAGCGGGACAGGACGGCGATTTGGACATTTTAAAGAGTCGGCTAGAAGTGGGGGTTAAAGGCAGGAGCTAAAACTCCTTAAAATAGAGGTTGGTATGGAGCACCGTAATGCCCTTTTTGCCCCCACACCTCCACTGTGCTCTGATCCTAAAGCTGCTGGAGTTTACTCTTACAAATTAGCTcttttgatatattttaatgtacctCTGATTGGGATACTGTTGAAGGTTTGGGCGGGTTGTGCCCTTAATGATGTCTCCTGACCTGTACTAAAGGAGTGGGGTAAAGTAGAGAATGGAGAAACACTAGCAAACCTGTAGCACCTGTAGAACACCATCTGCTCCTGTTCTGGCCTGTGCCCACTTCTGTGGCATCATGTTTCTTAATTTTCAAATGCATAAGCTACCTAGAGAAAGATTCACCTGCTCTGAATGAGCATATTTTTCGCGTGCATGTCAGTTTTTTGATGTATCAAATGTCATTTTGCTGATTCACAGAAGATTATGTGTTATTCCATTAATAAGTAAAAAGTTGATTTGCCTATGAACAGGGCATCAGCAGTATTAATCCACCATCTTTTGTAATGTTcacaatatatagatattttaagcAGAAAAGGTTTACTTCTTGTTTTATCCACTTGGTGTTCATGCTTTcctctaaaaaaataatcttttttttttgcctttaattGTCCATGACCCACTCGAGAGATATCTCTTGTGTGAATATTGTATGCTTCAGTCTTTTTGTGGGACCTGAATTGCCTTGAACAGTAAGGAAAGCAATACTACACTGATGCAGGTGATGCAACATTTAGCTCAGCtcaaaaatgtatacattttgaaaagtgaaCATTTGTAAAGTGCTCTCCAGGACTAAGAAAGTATTTACATTATGAGGTATTGATAGGAAGAATATTATTCACTTGTATCCTATCTTGATTTGTTGTATAGAAATAAATTCATTAGTACATTAAA

Function

symbol description
pdap1a Predicted to be active in cytosol. Orthologous to human PDAP1 (PDGFA associated protein 1).

NR:

description
28 kDa heat- and acid-stable phosphoprotein-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251267.3 True 1749 mRNA 0.42 6 17241694 17247513

Neighbor

gene id symbol gene type direction distance location
slc16a8 slc16a8,LOC107197668 coding upstream 1062 17237424 ~ 17240632 (+)
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding upstream 92346 17132606 ~ 17149348 (+)
LOC103032149 NA coding upstream 109981 17123605 ~ 17131713 (+)
eef2k eef2k coding upstream 125686 17097309 ~ 17116008 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding upstream 149084 17082313 ~ 17092610 (+)
LOC103024972 csnk1e,LOC103024972,LOC108431980,LOC107584103,LOC108273445,LOC107690058,LOC107731422 coding downstream 96424 17343937 ~ 17358593 (+)
tmem184b tmem184ba,tmem184b,LOC107690057,LOC107584104,LOC107692069,LOC107731404,LOC107554044 coding downstream 111210 17358723 ~ 17374122 (+)
tomm22 tomm22,LOC107554024,LOC107584213,LOC107692102 coding downstream 138381 17385894 ~ 17390425 (+)
dmc1 dmc1 coding downstream 144217 17391730 ~ 17396057 (+)
LOC103022777 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding downstream 149640 17397153 ~ 17409934 (+)
G37001 NA non-coding upstream 17287 17224041 ~ 17224407 (+)
G37000 NA non-coding upstream 17994 17223335 ~ 17223700 (+)
G36998 NA non-coding upstream 18819 17222400 ~ 17222875 (+)
G36983 NA non-coding upstream 69069 17172425 ~ 17172625 (+)
G36982 NA non-coding upstream 71838 17169351 ~ 17169856 (+)
G37055 NA non-coding downstream 220444 17467957 ~ 17468321 (+)
G37056 NA non-coding downstream 220967 17468480 ~ 17468772 (+)
G37058 NA non-coding downstream 222811 17470324 ~ 17470774 (+)
G37060 NA non-coding downstream 227905 17475418 ~ 17475771 (+)
G37066 NA non-coding downstream 261904 17509417 ~ 17509619 (+)
cby1 cby1 other upstream 7135 17232820 ~ 17234559 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other upstream 36661 17201497 ~ 17205033 (+)
sun1 NA other upstream 200737 17000382 ~ 17040957 (+)
cabcoco1 NA other upstream 1007855 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1801537 15432829 ~ 15440157 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 3468 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 49966 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 458166 17705679 ~ 17708597 (+)
G37098 NA other downstream 467616 17715129 ~ 17715992 (+)
G37099 NA other downstream 470718 17718231 ~ 17719376 (+)

Expression


Co-expression Network