LOC103028774


Basic Information

Item Value
gene id LOC103028774
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17204332 ~ 17212783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251270.3
TGAGTGGCCTATCAGCGTCTGTatacagagtgtgtgtggagatcAGGGCTGCTGGCCTCATTCAGCATGGAGAATCGGGTTAAATGAGGGAACCGCTTCAGTAGGGCGCGGCGAAAGCTTCCGCAGTCCTTTTAGTTTACAAGAAGTAGCTAGGCActaaaagtaaattatataCTTATCATACGGGTTATCACAGGAAAAGCAGATAAAATGTCAGTGGAACCGGTATCCGTTAGTACGGACGAAGGTCCTGACACCACAGCTGCATTTCCAGTAGTGTTAAAGAAAATTCTGGAGactcctccacccatcctctTCTCTGGTGAAGACGaaaatgaaaaagataaGCTGTTGGGAGATGATCCAGACAGCGGAGGAGGGGTCAGTGGACTTGGGCCTTCAGCCGCCTTGACCCCTGCAATCTGGGATAAGACTATTCCCTACGATGGTGAGACCTTCCACTTGGAGTACATGGATCTGGAGGAGTTTCTGATAGAGAATGGTATTCCTGCTTCATCTGAAGAAGCCCAGGTAAAAGAGCTGACCAAGGAAAGCTCCCAGCAGACACCTGAGAAGCCAGTTGATGTCATTTCGAAGACAGAGCCAGCCCCAGTCTCTCTGTTGCCAGTCGTAGAACTGGACCAGTGTCAGGAAGAGGTTATCACAACCACTGCATCAAGCACAGACTCAGTAGAGACCAAAACAGACAATGACCGGTTGACGCCGGAGCCTGTTGACCCGGAGGACATTGAGGTGGAAGTGAACTTCGAGCCAGATCCTACAGACCTCGTCCTGTCCAGCGTACCTGGAGGAGAACTGTTCGATCCCCGCAAACATCGCTTTACTGAAGAGGAGCTCAAGCCACAGCCCATGatcaaaaaagcaaagaaaatctTTGTGCCAGAAGAGCAGAAGGATGAGAAATACTGGCAGAGAAGGAAGAAGAACAATATTGCAGCTAAACGTTCACGAGATGCCCGGCGCCTAAAGGAGAATCAGATCACGGTCCGTGCTGCCTTCCTGGAGCGGGAGAACACAGCGCTGAGGCAGGAGGTGTCTGAGCTGCGCAAGGACTTTGGGCGCTGCAAGACTACTTTGTCACGCTATGAAGCCAAATACGGACCACTTGCTCCAGCTGAAGACCAGTAGAATGTTTTACTAACTTTAAGAGATGTTATACATTAAAGGAGCATTCATTCTAAATCCATCACCCAATACATGAGGGCGAAACGTCAGTTTAGGAGAATGTAACTGACCCCTAGCCATTTTGTAGCTGAAAGTAAATCTGATGCAGAAGTTCAAGTTGGGGCAAATTGGAGGTCTTGTAACATGAGCTGTGTCTATTACTGCTCTATTAACTATTCCTTGTCTTGTTTTACACGTTCCCATGTCTTCAATGCATTGTTCAGATGCACTAACATCAATTTTGTGGCACACATTAGGTAACATATGCTTAACTAGCTAGATTCCAGATTCAATCAGTACCACAAAGTAGAAGTTTGATTCTGACTAACTGCTGCGTTACTTATACAACTGACAGAAAGCTAAAATACAAACCGTTTTCTTATGCTAGCTGCTGTGACCATCAAGCTAGGCTAATGCTAGCTTAATTAGCAGGCACAAAAAGCCCACACCACAGTTCAATCCAAACTATAGGGTTCCAGACAAGAGTTAGTGGATAAAGACTCGAAAGAGAGTAAAGTGAATTATTTTTGGAACAGCTACGTGTTATGTGGTGTGTGCGTAGCTCTAAGCCTGTCAGCTATCACTTAGCCCTATTCAGGCACTGGTTTTCTGGTATTTCCTAGCAGCTTAGCTCATAGCTTAATGAATCTGATGCAGAACAGccatataaaaaacattgtttttctacaaggggaaataaaatccttttgttctttttttttttgtaaacgtTAAACACATATACACTGTTCACACCATGCTTGTATTGTCTCTGGTGTTACCCGCAATTGTCCCCAAGGTTAAAAAATTACCACGAACCTTTAGTCAGAAATGTAATACAAAAAATTGGATTTTGAATTGAACACTCTTTCTAATGTGAAAAAGAATGATATTAGAGTGTACTGTGCGGAGAGGAAGATGGTGAAGGGGAAGAACAGACAGGATGCTGGTGAGGAGTGAATTTGTGGTTTACCAGTGATCAGTATCTTGtttaaagttgttttaataTCATGGTTTGCACTAGGTAAAGGCTTTTTTAGTGCAAATAGATAAATGGAGTGAAGTGACCTTTTGCCCTTTCTTGTTCTTATTCTGGGGATACAAGAACATTTGGGACGATTATTACAGAAAAATGGCTTTGTAGCTCGTTGTAcgttctttgtctttttttctacattgtttcTCTGGAGTTTACTTGTTTGTGTATAAATGCAGGGTGTAACACAAATTGTAGATATATAACTGGATATCATTAGACAGAGCATGATCAAAAGTAAACGTGTAAACGTTcctcttgtgttttttgtgctgTGAACAGGTTGTAATTGTCTGTGTGTCCATTTAACATGTATCCAAACCCTGTAGTGTCTTAAGagatttgttttgtgtgttttttttttataacaagtCAGTAACAAcaaaacagttatttttttgtaatcttGCTTCATGTAACTGGTTCCCTCAACCTTGATTAACATCAGGCATTATTTACCCCACCAAATGCAATAGAGGTTAATTCTGCCTCAAAGCCATGTGGTTTGGTCAGAACAGAGCAGAAACTTGATTATGTTATTAAATCAAGGGAGGGTGTAcaacaaaaaatactgtaaatagttCTTTGTGTGTAAATAAGAGTTTATTCTGTTCCAATTCTGAGCTTGTTTTCTGTAACAAtaacacatttcacactgtaaactgagCCTAACTAATACAGCAACCTCATATGTTTAAGGCTCTTGCTGTGTGCATATCAACCCAACAGTTAACCCAACATATAAATATCTGCTTGTTTAcaaaagggcaaaaaaaaaggtatattataaatcattatcttgtattagtgtgtgtgtgtgtgtatgtgtgtgtatatatatatatatatatacacacatacacacatacacacacattagtcTCCCCCATTAGACATGTCTAAAGATCATCACTGTGTGCTTCcaggtttaatatatatatatatataatatatatatatatatatatatatatatatatattatatatatatactacaaacCCATATATCAACAATAATCTCATGATCTcttcatgttttaaatattgtttctgTTCTGTGACAGGCTAAAAGGGATTAAACATTTCTAACCAATGTCTGTTATGTTTTACAGTTCTACAGTAATAACTTTCACTCCTATTTGATGTCGGAGATTAATTTCCAAAAAATTGGAAAATTGTCTTAGATAAGGCGTGGcttaccttttttttctttgagagAGTTTGGTTGAAAATGATTTGTAAAGCATGTTTGATATTTTCAGTAGCTAGCAGTTAGCATTTATGTACATATTTGACTGTTCTACAAGTATTTGGTTTTGGGTATTTTAGAAAGCAGGATTTCTCTGTTAACCAGATAACTTAAGCCTAAACATGAGGTCTGTACTGattcatatataaaaacaaaccttaatataatattgaaataaatttaACATTACATATCACCAAAATTAGAattacaaaaagaagaaaaaatgtatCTGGTTTCAGCTAtttatgaaacatttattaacttAAGACTTAATTTTCTACTTTTTGTATTATCTGAATATGTTGGTTGGCCTGTTTGCCTGTAGTATCCCCCTCATGCTTTTATACAtaggtttgttttaatgtaaaactgtTGATGTAAATCTGTTAAACTGTCCTGATAACCCCCTGTTGTacatattaataaagaaaaagatgtcGACATTAAAAAAA
>XM_007251272.3
GGTCTGGTTAAGTAAGCCTAAACCTTGTGACACTCTGAAAGTTTCATATCTGACCTTGCCTCTCAACCTtgcctgtgttttattttattcgtCAGCTGTGTGGTTTAGTAATTTCTGAGATGTCTGCAGATATCCCGGAGATATTCAAGGCCCTGCTCGAGCACCCTTTCTCAGTCCCCTCCTTTATTGACGaaaatgaaaaagataaGCTGTTGGGAGATGATCCAGACAGCGGAGGAGGGGTCAGTGGACTTGGGCCTTCAGCCGCCTTGACCCCTGCAATCTGGGATAAGACTATTCCCTACGATGGTGAGACCTTCCACTTGGAGTACATGGATCTGGAGGAGTTTCTGATAGAGAATGGTATTCCTGCTTCATCTGAAGAAGCCCAGGTAAAAGAGCTGACCAAGGAAAGCTCCCAGCAGACACCTGAGAAGCCAGTTGATGTCATTTCGAAGACAGAGCCAGCCCCAGTCTCTCTGTTGCCAGTCGTAGAACTGGACCAGTGTCAGGAAGAGGTTATCACAACCACTGCATCAAGCACAGACTCAGTAGAGACCAAAACAGACAATGACCGGTTGACGCCGGAGCCTGTTGACCCGGAGGACATTGAGGTGGAAGTGAACTTCGAGCCAGATCCTACAGACCTCGTCCTGTCCAGCGTACCTGGAGGAGAACTGTTCGATCCCCGCAAACATCGCTTTACTGAAGAGGAGCTCAAGCCACAGCCCATGatcaaaaaagcaaagaaaatctTTGTGCCAGAAGAGCAGAAGGATGAGAAATACTGGCAGAGAAGGAAGAAGAACAATATTGCAGCTAAACGTTCACGAGATGCCCGGCGCCTAAAGGAGAATCAGATCACGGTCCGTGCTGCCTTCCTGGAGCGGGAGAACACAGCGCTGAGGCAGGAGGTGTCTGAGCTGCGCAAGGACTTTGGGCGCTGCAAGACTACTTTGTCACGCTATGAAGCCAAATACGGACCACTTGCTCCAGCTGAAGACCAGTAGAATGTTTTACTAACTTTAAGAGATGTTATACATTAAAGGAGCATTCATTCTAAATCCATCACCCAATACATGAGGGCGAAACGTCAGTTTAGGAGAATGTAACTGACCCCTAGCCATTTTGTAGCTGAAAGTAAATCTGATGCAGAAGTTCAAGTTGGGGCAAATTGGAGGTCTTGTAACATGAGCTGTGTCTATTACTGCTCTATTAACTATTCCTTGTCTTGTTTTACACGTTCCCATGTCTTCAATGCATTGTTCAGATGCACTAACATCAATTTTGTGGCACACATTAGGTAACATATGCTTAACTAGCTAGATTCCAGATTCAATCAGTACCACAAAGTAGAAGTTTGATTCTGACTAACTGCTGCGTTACTTATACAACTGACAGAAAGCTAAAATACAAACCGTTTTCTTATGCTAGCTGCTGTGACCATCAAGCTAGGCTAATGCTAGCTTAATTAGCAGGCACAAAAAGCCCACACCACAGTTCAATCCAAACTATAGGGTTCCAGACAAGAGTTAGTGGATAAAGACTCGAAAGAGAGTAAAGTGAATTATTTTTGGAACAGCTACGTGTTATGTGGTGTGTGCGTAGCTCTAAGCCTGTCAGCTATCACTTAGCCCTATTCAGGCACTGGTTTTCTGGTATTTCCTAGCAGCTTAGCTCATAGCTTAATGAATCTGATGCAGAACAGccatataaaaaacattgtttttctacaaggggaaataaaatccttttgttctttttttttttgtaaacgtTAAACACATATACACTGTTCACACCATGCTTGTATTGTCTCTGGTGTTACCCGCAATTGTCCCCAAGGTTAAAAAATTACCACGAACCTTTAGTCAGAAATGTAATACAAAAAATTGGATTTTGAATTGAACACTCTTTCTAATGTGAAAAAGAATGATATTAGAGTGTACTGTGCGGAGAGGAAGATGGTGAAGGGGAAGAACAGACAGGATGCTGGTGAGGAGTGAATTTGTGGTTTACCAGTGATCAGTATCTTGtttaaagttgttttaataTCATGGTTTGCACTAGGTAAAGGCTTTTTTAGTGCAAATAGATAAATGGAGTGAAGTGACCTTTTGCCCTTTCTTGTTCTTATTCTGGGGATACAAGAACATTTGGGACGATTATTACAGAAAAATGGCTTTGTAGCTCGTTGTAcgttctttgtctttttttctacattgtttcTCTGGAGTTTACTTGTTTGTGTATAAATGCAGGGTGTAACACAAATTGTAGATATATAACTGGATATCATTAGACAGAGCATGATCAAAAGTAAACGTGTAAACGTTcctcttgtgttttttgtgctgTGAACAGGTTGTAATTGTCTGTGTGTCCATTTAACATGTATCCAAACCCTGTAGTGTCTTAAGagatttgttttgtgtgttttttttttataacaagtCAGTAACAAcaaaacagttatttttttgtaatcttGCTTCATGTAACTGGTTCCCTCAACCTTGATTAACATCAGGCATTATTTACCCCACCAAATGCAATAGAGGTTAATTCTGCCTCAAAGCCATGTGGTTTGGTCAGAACAGAGCAGAAACTTGATTATGTTATTAAATCAAGGGAGGGTGTAcaacaaaaaatactgtaaatagttCTTTGTGTGTAAATAAGAGTTTATTCTGTTCCAATTCTGAGCTTGTTTTCTGTAACAAtaacacatttcacactgtaaactgagCCTAACTAATACAGCAACCTCATATGTTTAAGGCTCTTGCTGTGTGCATATCAACCCAACAGTTAACCCAACATATAAATATCTGCTTGTTTAcaaaagggcaaaaaaaaaggtatattataaatcattatcttgtattagtgtgtgtgtgtgtgtatgtgtgtgtatatatatatatatatatacacacatacacacatacacacacattagtcTCCCCCATTAGACATGTCTAAAGATCATCACTGTGTGCTTCcaggtttaatatatatatatatataatatatatatatatatatatatatatatatatattatatatatatactacaaacCCATATATCAACAATAATCTCATGATCTcttcatgttttaaatattgtttctgTTCTGTGACAGGCTAAAAGGGATTAAACATTTCTAACCAATGTCTGTTATGTTTTACAGTTCTACAGTAATAACTTTCACTCCTATTTGATGTCGGAGATTAATTTCCAAAAAATTGGAAAATTGTCTTAGATAAGGCGTGGcttaccttttttttctttgagagAGTTTGGTTGAAAATGATTTGTAAAGCATGTTTGATATTTTCAGTAGCTAGCAGTTAGCATTTATGTACATATTTGACTGTTCTACAAGTATTTGGTTTTGGGTATTTTAGAAAGCAGGATTTCTCTGTTAACCAGATAACTTAAGCCTAAACATGAGGTCTGTACTGattcatatataaaaacaaaccttaatataatattgaaataaatttaACATTACATATCACCAAAATTAGAattacaaaaagaagaaaaaatgtatCTGGTTTCAGCTAtttatgaaacatttattaacttAAGACTTAATTTTCTACTTTTTGTATTATCTGAATATGTTGGTTGGCCTGTTTGCCTGTAGTATCCCCCTCATGCTTTTATACAtaggtttgttttaatgtaaaactgtTGATGTAAATCTGTTAAACTGTCCTGATAACCCCCTGTTGTacatattaataaagaaaaagatgtcGACATTAAAAAAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09058 TEF; thyrotrophic embryonic factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251270.3 True 3927 mRNA 0.38 5 17204332 17210607
XM_007251272.3 False 3788 mRNA 0.38 5 17204332 17212783

Neighbor

gene id symbol gene type direction distance location
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 5495 17187667 ~ 17198837 (-)
LOC103043322 NA coding downstream 34454 17148541 ~ 17169878 (-)
trnal-uag_1 NA coding downstream 109006 17095245 ~ 17095326 (-)
LOC103032763 snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236 coding downstream 136350 17065403 ~ 17067982 (-)
LOC103037732 NA coding downstream 310815 16875022 ~ 16893517 (-)
LOC103028243 LOC108431941,LOC107584177 coding upstream 813 17213596 ~ 17232139 (-)
LOC103027309 NA coding upstream 60590 17273373 ~ 17288832 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding upstream 106423 17319206 ~ 17325915 (-)
rsl1d1 NA coding upstream 202292 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 218223 17431006 ~ 17438492 (-)
G37217 NA non-coding downstream 82131 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 88324 17112502 ~ 17116008 (-)
G37213 NA non-coding downstream 93623 17108712 ~ 17110709 (-)
G37206 NA non-coding downstream 112281 17091742 ~ 17092051 (-)
G37191 sun1 non-coding downstream 163391 17036556 ~ 17040941 (-)
G37237 tnrc6b non-coding upstream 28393 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding upstream 28937 17241720 ~ 17247453 (-)
G37254 tnrc6b,LOC107690060 non-coding upstream 122808 17335591 ~ 17337322 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 173058 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 276102 17488885 ~ 17494415 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 19905 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 141385 17047607 ~ 17062947 (-)
G37183 NA other downstream 185414 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 289047 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1363816 15837105 ~ 15840516 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 161401 17374184 ~ 17381733 (-)
G37290 NA other upstream 220189 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 261127 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 321920 17534703 ~ 17689384 (-)
cntd1 NA other upstream 479714 17692497 ~ 17705023 (-)

Expression


Co-expression Network