LOC103032763 (snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236)


Basic Information

Item Value
gene id LOC103032763
gene name snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17065403 ~ 17067982 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251285.3
GCTAagtagcacatatcgatgggtagcaaaattcgacagaacacctggtTACTACGATAACATATACGGAAATCATTTGAAACCTAAtctgaaaaaacaataaaaagaatatcGGTGAGAGTTTATCTGTCACCGTAAATAATTTAACCAGCAATGCTAGCTAACAATGTGCGGCGAGTTTAGTGTGAACAGGATCCATCCTGCGCATGCGCAGTCACACACAACCAAACACGTGTTGGAAGCGGCGGTAGTTCAGCTCGTCCAGCTTAAACAGCTCAGTTCAGTCGCGAGTTTTTGTATCGTGTTTTGTGAGTGTTTTTTCAGCTTTTAGCTTAAAGTAATCGTTGTTTGTCCTCCGTGAAGCATTCGCCGAGAGGACTCGAATACGTCATCAATCATGAGTGAAACTGAGGTGAATCCCAAAGCCTATCCTTTGGCTGATGCCACTCTGAGCAAAACTATTCTGGACCTTGTTCAGCAGGCATCGAACTACAAACAACTGCGCAAAGGAGccaatgaatCCACCAAAACTCTGAACCGAGGAATTTCAGAGTTTATCGTCATGGCTGCTGATGCCGAACCCCTGGAGATCATCCTGCATCTTCCACTGCTATGTGAGGACAAGAACGTGCCTTATGTCTTTGTGAGGTCAAAGCAAGCCCTTGGACGGGCATGTGGGGTGTCGAGACCTATCATTGCTACATCCGTCACCATTAAGGAAGGATCACAGCTGAAACCTCAAATTCAGTCTGTGCAGATGGCTATTGAGAGACTATTGGTCTGAGCATGTTGTGATTTTATATCTTCATATGTTTTTGTGTAAGTTTTAAACTGTTTCTGTACATCTATACAGAAATCATATGGGTTTTATTGTAATGTGATATAGGAGTTAATTTTCTAACATGTAAGTAATGCTGAGTTACAACAACCAAAATAAATTTTGGTTATTTGTAAA

Function

symbol description
snu13b Predicted to enable RNA binding activity. Acts upstream of or within somite development. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex; nucleus; and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; immature eye; mesoderm; nervous system; and pectoral fin musculature. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13).
snu13 Enables ATPase binding activity and RNA binding activity. Contributes to snoRNA binding activity. Involved in mRNA splicing, via spliceosome. Located in dense fibrillar component. Part of U2-type precatalytic spliceosome; box C/D RNP complex; and spliceosomal snRNP complex.

NR:

description
NHP2-like protein 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0061053 somite development biological_process
GO:0005730 nucleolus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12845 SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251285.3 True 955 mRNA 0.42 3 17065403 17067982

Neighbor

gene id symbol gene type direction distance location
LOC103037732 NA coding downstream 171886 16875022 ~ 16893517 (-)
exoc6 exoc6,LOC107654070 coding downstream 199309 16798517 ~ 16866094 (-)
LOC103044660 LOC103044660,LOC108412396,LOC107653962,LOC108273895,LOC107745679,LOC107593523,LOC107596578 coding downstream 271896 16790627 ~ 16793507 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding downstream 351914 16538181 ~ 16713489 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding downstream 581258 16463328 ~ 16484145 (-)
trnal-uag_1 NA coding upstream 27263 17095245 ~ 17095326 (-)
LOC103043322 NA coding upstream 80559 17148541 ~ 17169878 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding upstream 119685 17187667 ~ 17198837 (-)
LOC103028774 NA coding upstream 136350 17204332 ~ 17212783 (-)
LOC103028243 LOC108431941,LOC107584177 coding upstream 145614 17213596 ~ 17232139 (-)
G37191 sun1 non-coding downstream 24462 17036556 ~ 17040941 (-)
G37186 NA non-coding downstream 38461 17026457 ~ 17026942 (-)
G37189 NA non-coding downstream 44475 17020721 ~ 17020928 (-)
G37185 sun1 non-coding downstream 49505 17000372 ~ 17015898 (-)
G36922 reep3 non-coding downstream 313235 16742832 ~ 16752168 (-)
G37206 NA non-coding upstream 23760 17091742 ~ 17092051 (-)
G37213 NA non-coding upstream 40730 17108712 ~ 17110709 (-)
G37215 NA non-coding upstream 44520 17112502 ~ 17116008 (-)
G37217 NA non-coding upstream 53793 17121775 ~ 17122201 (-)
G37237 tnrc6b non-coding upstream 173194 17241176 ~ 17327596 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 2456 17047607 ~ 17062947 (-)
G37183 NA other downstream 46485 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 150118 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1224887 15837105 ~ 15840516 (-)
G36677 NA other downstream 1290810 15747400 ~ 15774593 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 111365 17179347 ~ 17184427 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 306202 17374184 ~ 17381733 (-)
G37290 NA other upstream 364990 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 405928 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 466721 17534703 ~ 17689384 (-)

Expression


Co-expression Network