LOC103033077 (LOC108412267,LOC108274277,LOC107596603,LOC107695555)


Basic Information

Item Value
gene id LOC103033077
gene name LOC108412267,LOC108274277,LOC107596603,LOC107695555
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17068936 ~ 17079779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251287.3
CAGGCGGTTGTGGGAAGGACGTCCAGGTCAGACATATTAGTTCTCGGTTGGagttgaaggagagagagagaacatgaaGGGGATTCGGGGGATAAGTCAAGTATCGagACGGGCCTTTGCGGCCACTTCAAGCCACCCACCCTTGAGTGAGCCTCTGTCGGGCCTTAAGGTGTCTGCGGGTGCCGTCCACATGTACCAGGATgtacatGTGACTAAACTGCCCAGTGGGTTGGTCATCGCTTCTCTGGAAAATTACTCCCCTGCGTCTCGCATTGGTGTGCTGGTGAGGGCTGGCAGTCGCTATGAAACCTTGGACAGCCTGGGTGTTACACACCTGCTTCGACTGgcgagtggtctgACTACCAAAGGAGCCTCTGCTTTTAGGATCTGCCGTGGGATTGAAGCTGTAGGAGGAAGTCTTGGtgtGAATACCACCAGAGAAACCATGCTGTACACCGTGGACTGTCTGAGAGATCAGATAGACACAGTCATGGAATATCTGATCAATGTGACCACTGCTCCAGAGTTTCGACCCTGGGAACTGGCTGAGCTCACACCCAGGGTGAAACTAGACAATGCCATTGCAAGCAAGAGCGTGCAGATTGGTGTCCTTGAGAATCTGCATGCTGCTGCTTACAAGAATGCGCTCTCCAACTCTCTGTACTGTCCAGATTACATGGTTGGCAAAATCTCCACAGACCAGATGCACACCTTTGTTCAGAACAATTTTACAAGTGGAAGAATGGCTCTTGTTGGACTGGGTGTGGACCATGCTGTTCTTAAGCAAGTAGGAGAGCAGTTCCTCAACATCCGTAGTGGAACAGGCACTGCTGGGTCAAATGCTGTGTATCATGGAGGTGAGCTGCGGCAACAGACAGGGGACAGCTTGGTACATGCAGCTCTGGTGGCTGAAGGAGCAGCAGTGAGCTCTGCTGAGGCCACAGCCTTCGGAGTGCTGCAGCATGTTCTGGGGGTGGGACCACGTGTCAAGAGAGGCTCCAACACCACCAGCCTGCTGGACCAGGCCATATCTAAGGTCTCAACTCAGCCTTTTGATGCCTCCGCATTTAATGCCAGCTACTCTGACTCTGGTCTGTTTGGAGTATACACCATCTCACAGGCCGCTACAACTAGAGATGTGATCAAGGCTGCCATTGGCCAGGTCAGTTCCATCGCACAGGGAAACCTTGCTGCATCAGACCTCAGCAGAGCCAaAGCCCAGCTGAAGGCTGAGTACCTTATGTCTATTGAAAGCTCAGAAAGCCTGTTGGAAACTATTGGGACACAAGCATTAACCGAGGGCACCTACCATTCCCCAGAGGCAATAACCCAAAAAGTTGATGCTGTGTCTTCTAGTGATGTTATTAATGCCGCAAAAAAGTTTGTGTCCGGCAAGAAGGCAATGGCTGCCAGTGGACATCTGGTGAACACCCCTTTCCTGGATGAAATCTAATTGACCTCCAGTGCTCCTCCGATTCAGAGAGGATGCAAGAAAACAATCTTGATACCAGTCCCAGCACTTGTCCAGAGTAATAATGTttgatgttaaaatattattttatgaagtggaaaaacattaaataagaggAAAGACTCTACCACTGTCCATCTGAACTGTATAgaacatgtaaactaataaaacatatttgttcggggaaaaa
>XM_007251289.2
AACGCAGGCGGTTGTGGGAAGGACGTCCAGGTCAGACATATTAGTTCTCGGTTGGagttgaaggagagagagagaacatgaaGGGGATTCGGGGGATAAGTCAAGTATCGAGGAGGCTTTATGCCGCCCAGGCTGCCCGTAAGGTGGAGGCAGCGGAGCCAGTAAAGTTTCTGCCGCAGGAGGTGCAGGTGACTAAACTGCCCAGTGGGTTGGTCATCGCTTCTCTGGAAAATTACTCCCCTGCGTCTCGCATTGGTGTGCTGGTGAGGGCTGGCAGTCGCTATGAAACCTTGGACAGCCTGGGTGTTACACACCTGCTTCGACTGgcgagtggtctgACTACCAAAGGAGCCTCTGCTTTTAGGATCTGCCGTGGGATTGAAGCTGTAGGAGGAAGTCTTGGtgtGAATACCACCAGAGAAACCATGCTGTACACCGTGGACTGTCTGAGAGATCAGATAGACACAGTCATGGAATATCTGATCAATGTGACCACTGCTCCAGAGTTTCGACCCTGGGAACTGGCTGAGCTCACACCCAGGGTGAAACTAGACAATGCCATTGCAAGCAAGAGCGTGCAGATTGGTGTCCTTGAGAATCTGCATGCTGCTGCTTACAAGAATGCGCTCTCCAACTCTCTGTACTGTCCAGATTACATGGTTGGCAAAATCTCCACAGACCAGATGCACACCTTTGTTCAGAACAATTTTACAAGTGGAAGAATGGCTCTTGTTGGACTGGGTGTGGACCATGCTGTTCTTAAGCAAGTAGGAGAGCAGTTCCTCAACATCCGTAGTGGAACAGGCACTGCTGGGTCAAATGCTGTGTATCATGGAGGTGAGCTGCGGCAACAGACAGGGGACAGCTTGGTACATGCAGCTCTGGTGGCTGAAGGAGCAGCAGTGAGCTCTGCTGAGGCCACAGCCTTCGGAGTGCTGCAGCATGTTCTGGGGGTGGGACCACGTGTCAAGAGAGGCTCCAACACCACCAGCCTGCTGGACCAGGCCATATCTAAGGTCTCAACTCAGCCTTTTGATGCCTCCGCATTTAATGCCAGCTACTCTGACTCTGGTCTGTTTGGAGTATACACCATCTCACAGGCCGCTACAACTAGAGATGTGATCAAGGCTGCCATTGGCCAGGTCAGTTCCATCGCACAGGGAAACCTTGCTGCATCAGACCTCAGCAGAGCCAaAGCCCAGCTGAAGGCTGAGTACCTTATGTCTATTGAAAGCTCAGAAAGCCTGTTGGAAACTATTGGGACACAAGCATTAACCGAGGGCACCTACCATTCCCCAGAGGCAATAACCCAAAAAGTTGATGCTGTGTCTTCTAGTGATGTTATTAATGCCGCAAAAAAGTTTGTGTCCGGCAAGAAGGCAATGGCTGCCAGTGGACATCTGGTGAACACCCCTTTCCTGGATGAAATCTAATTGACCTCCAGTGCTCCTCCGATTCAGAGAGGATGCAAGAAAACAATCTTGATACCAGTCCCAGCACTTGTCCAGAGTAATAATGTttgatgttaaaatattattttatgaagtggaaaaacattaaataagaggAAAGACTCTACCACTGTCCATCTGAACTGTATAgaacatgtaaactaataaaacatatttgttcggggaaaaa

Function

NR:

description
PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K00415 QCR2, UQCRC2; ubiquinol-cytochrome c reductase core subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251287.3 True 1661 mRNA 0.50 14 17068940 17079779
XM_007251289.2 False 1641 mRNA 0.50 14 17068936 17079779

Neighbor

gene id symbol gene type direction distance location
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding upstream 14518 17047584 ~ 17054418 (+)
LOC103036473 myof coding upstream 70821 16945064 ~ 16998115 (+)
tubgcp2 tubgcp2,gcp2 coding upstream 125542 16929511 ~ 16943394 (+)
LOC103044975 reep3,LOC108412837 coding upstream 316733 16715891 ~ 16752203 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 541689 16407964 ~ 16527247 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 2534 17082313 ~ 17092610 (+)
eef2k eef2k coding downstream 17530 17097309 ~ 17116008 (+)
LOC103032149 NA coding downstream 43826 17123605 ~ 17131713 (+)
LOC103030465 kctd17,kcd17,LOC107734225,LOC107584096,LOC107692061,LOC103382075,LOC101463851,LOC105025089 coding downstream 52827 17132606 ~ 17149348 (+)
slc16a8 slc16a8,LOC107197668 coding downstream 157645 17237424 ~ 17240632 (+)
G36969 NA non-coding upstream 10934 17057504 ~ 17058002 (+)
G36956 NA non-coding upstream 42005 17026187 ~ 17026931 (+)
G36964 NA non-coding upstream 43812 17024831 ~ 17025124 (+)
G36962 NA non-coding upstream 45521 17022768 ~ 17023415 (+)
G36957 NA non-coding upstream 48369 17020266 ~ 17020567 (+)
G36977 LOC108273417,LOC107663179,LOC107734164 non-coding downstream 76167 17155946 ~ 17165403 (+)
G36981 NA non-coding downstream 87130 17166909 ~ 17167150 (+)
G36982 NA non-coding downstream 89572 17169351 ~ 17169856 (+)
G36983 NA non-coding downstream 92646 17172425 ~ 17172625 (+)
G36998 NA non-coding downstream 142621 17222400 ~ 17222875 (+)
sun1 NA other upstream 27979 17000382 ~ 17040957 (+)
cabcoco1 NA other upstream 835097 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1628779 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2278103 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2501024 14564925 ~ 14567912 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 121718 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 153041 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 171202 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 217700 17297479 ~ 17340892 (+)
LOC103045739 LOC103045739 other downstream 625900 17705679 ~ 17708597 (+)

Expression


Co-expression Network