tubgcp2 (tubgcp2,gcp2)


Basic Information

Item Value
gene id tubgcp2
gene name tubgcp2,gcp2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16929511 ~ 16943394 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251304.3
TCGTTTTGGCGGTTCTtcgaaaaaataataagagtcTCTGATATCTTGTTAGTTAGCAATGTCAGTGTTATTTACACGATAGCTGCGCGCTTCTGCAACTGAGGCTATTGCAGGTGGTCGATGTGACACCATGAGTGAATTCAGGATACATCATGATGTCAACGAACTGCTCAGCCTCCTTCATGTTCGAGGAGGAGATGGGGCTGAGGTCTATATTGATTTACTGCAGAAGAACAGGACTCCATATGTCACCACTACAGTGTCTGCACACAGTGCTAAGGTTAAGATTGCAGAGCACTCTAAAACACCTGAGGACTTTTTGAGGAAATATGAAGAACTGAAGTCAAAAAATGCACGCAACTTGGATCCACTTGTTTACCTTCTTTCAAAACTCACAGAAGATAAAGAGACCCTGAAATGTCTGCAACAAAATGCCAAGGAGAGATCAGAGATGTCTGCAAATGCAACATCAAGCAGCACAACATCCTTCAGTATTCCCACCACCAGCACCAAGATGTCAATGCAGGAGTTGGAGGAACTGCGCAAAAAGCTTGGGAATGTAACAGCCAGCACCAATGTTCCCCAGtctGCTGAAGTTATTCGTAAGATGCTAAGAGACAGACACAACAAGAAGAATCCCACACAGCCTATTCCTGTGTTTCCAAACTGGGTGTATGACAGACCTGCACTTATTGGAGATTTTATGACCAGTCCTACACCAATGGGGGATCCAGTTGTGGCGATTGGGACAATGCCACTGCCTGTCCAGGAGCAGGCTCTGGTTGAAGACTTGCTGTACGTACTTATTGGTGTGGATGGAAGAGACGTCACAGCCCAGCCTGTGCTTGGCCGACAGAGTCGCTCCTTCATAGTAGACCCTTCTCTGGACATGTCTATTAAGGAGCTGGTAAACCGGGTCTTACCAGTGGCATCCTGTTACTCCACAATTACTCGCTTCACAGAGGAGAAGTCGTCCTTTGAGTATGGCCAGGTCAACCATGCTCTCACTGCTGCAATGAGGACTTTGATGAAGGAGTATCTAATTCTGGTGACCCAGCTCGAACACCTACACAGGCAGGGCATGCTCTCCCTGCAGAAGCTCTGGTTCTACATTCAGCCTACAATGCGCACCATTGAGGTCTTGGCCTCCATTGCTACATCAGTGGAGAAAGGAGAATGTATGGGTGGTTCAACATTAAGTCTGCTCCATGACCGCACTTTTAATTACACTGGGGACAGCCAGGCCCAAGAGCTGTGTCTCTATCTCACCAAAGCAGCCAGCGTTCCATACTTTGAAATACTAGAGAAGTGGATCTACCGTGGAATCATCAAAGACCCTTATGGAGAATTCATGGTTGAAGAACATGAGCTTCAAAAGGAGAAGATTCAGGAGGACTATAACGATAAATACTGGGATCAAAGATACACCATTGTGCAGCACAAAATCCCATCTTTCCTCCAAAAAATGGCAGATAAAATACTCAGCACAGGGAAGTACTTGAATGTTGTAAGGGAATGTGGGCGTGATGTGACCTGTCCAGATGCTAAGGAAGTACTATACACCTTAAAAGAGAGAGCATATGTGGAACAAATTGAAAAAGCCTACAACTACGCCAGTAAGGTCCTTCTGGACTTTCTTATGGAGGAGAAGGAGCTGGTGTCACGACTGAGGTCCATTAAGCACTATTTTTTAATGGACAAGGGAGACTTCTTTGTGCACTTCATGGACCTCACTGAGGAGGAGCTGAAGAAACCCGTTGATGACATCATCCCTCCTCGGCTGGAGGCTCTGCTGGAGCTGGCTCTTAGAATGAGCACGGCCAACACAGACCCCTTTAAAGATGATCTAAAGATTGACCTGATGCCCCATGATGTCATTACTCAGCTGTTGCGGGTGCTGGCCATTGAGACTAAGCAGGAAAAGGCTATCATCAATGCTGACCCTACTGATGTGGCCCTAAGTGGCCTGGAGGCTTTCTCTTTTGATTACATTGTAAAATGGCCACTATCACTTATAATCAACAGGAAAGCACTGACAAGATACCAGATGCTGTTCAGACACTTGTTCTACTGCAAACATGTTGAGAGACTGCTGTGCAATTTTTGGATCAGCAACAAGTCAGTCAAGCAGTACTCCTTGCACTCTGCTAAGTGGTTTGCTGGTGCGTTCGCTCTCAGGCAGCGCATGCTGAACTTTGTGCAGAACATCCAGTACTACATGATGTTTGAAGTCATGGAACCCACATGGCACGTCATGGAGAACAACCTGAAATCGGCGTCAAATATTGATGATGTGCTTTGCCATCACACCAGTTTCCTGGATAACTGTCTGAAGGACTGCATGCTGACCAACCCTGAACTTCTAAAGATCTTCTCTAAGCTCATGTCTGTCTGCGTCATGTTCACCAACTGTATGCAGCGATTCACCCAGAGCATGAGGATGGACAGTGAGATGAACCGTCTGGAACATGGAACCATGGAGGGCCCTCCAACTCGGAATGAACGCACTGAGgaagctgaaaaaaagaaacttgCCTCCAAATTTTTAGCTGAGCATGTGGAATCCCTGCAGTCTGATTCGAACTTTGAAGGCACGATCAGTAAGTTTGACAGTAATTTCAGCACACTGTTGTTGGATCTGCTGGACAAGCTGAGTATCTACAGCACTAACGACTGCGAGCACAGCATGATCAACATCATTTACAGGTTAGACTTCAATGGATTCTACACTGAGCGTCTGGAGCGGATGGCTATTGAGAGGAGCCAAAAAGCTGCTGCGTAATAATGCTAAGGACTTTTATAAAGTGTGCAACATGTTATTCTTATGgtatgttaaaaatgaaaactgtgtacctaataataaactaatattaatgtgtgtaacattacaaaactttttttttactgtacagtTAAAGTATTTGCTTGGCTGCGTGGTCATTGTGTGCCTCTTTTGTGTTGCTGTTAAATGCGTAGCCGTAATGAGCGAGCAGTTCTCTCCTAAAACATTGGATCAATGACTTCAGCCCTGGTTATATCATGTgcgtttttctttattcttcatTTCATGAAGTCATTATTTAAGGGGTATGTACAAAGTCTTGTTGCTATTACAATGTGAAGGCAATAAACCTCAGTGACAAATCTGA

Function

symbol description
tubgcp2 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP2 (tubulin gamma complex associated protein 2).
gcp2 gamma-tubulin complex component 2

NR:

description
PREDICTED: gamma-tubulin complex component 2

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16569 TUBGCP2, GCP2; gamma-tubulin complex component 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251304.3 True 3149 mRNA 0.45 18 16929511 16943394

Neighbor

gene id symbol gene type direction distance location
LOC103044975 reep3,LOC108412837 coding upstream 177308 16715891 ~ 16752203 (+)
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 402264 16407964 ~ 16527247 (+)
LOC103046195 NA coding upstream 469598 16457415 ~ 16459913 (+)
arid5b arid5b,LOC107727057 coding upstream 532123 16258160 ~ 16397388 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding upstream 754316 16149838 ~ 16175195 (+)
LOC103036473 myof coding downstream 1670 16945064 ~ 16998115 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 104190 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 125542 17068936 ~ 17079779 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 138919 17082313 ~ 17092610 (+)
eef2k eef2k coding downstream 153915 17097309 ~ 17116008 (+)
LOC103038048 NA non-coding upstream 62557 16863070 ~ 16866954 (+)
G36915 NA non-coding upstream 91547 16836526 ~ 16837964 (+)
G36899 cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679 non-coding upstream 136911 16733612 ~ 16792600 (+)
G36852 NA non-coding upstream 360119 16540984 ~ 16569392 (+)
LOC111192379 NA non-coding upstream 389497 16529150 ~ 16540014 (+)
G36957 NA non-coding downstream 76872 17020266 ~ 17020567 (+)
G36962 NA non-coding downstream 79374 17022768 ~ 17023415 (+)
G36964 NA non-coding downstream 81437 17024831 ~ 17025124 (+)
G36956 NA non-coding downstream 82793 17026187 ~ 17026931 (+)
G36969 NA non-coding downstream 114110 17057504 ~ 17058002 (+)
cabcoco1 NA other upstream 695672 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1489354 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 2138678 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2361599 14564925 ~ 14567912 (+)
G36371 NA other upstream 2465872 14463137 ~ 14463639 (+)
sun1 NA other downstream 56988 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 258103 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 289426 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 307587 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 354085 17297479 ~ 17340892 (+)

Expression


Co-expression Network