LOC103044975 (reep3,LOC108412837)


Basic Information

Item Value
gene id LOC103044975
gene name reep3,LOC108412837
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16715891 ~ 16752203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255112.3
CGCACCTTGCTAGCCGTACGGCCCCAAGGCAGTGTCGGTTAGGTGGAGGGATCGAAGGCGCTGGGCGAGCCAAAACAAAACTAGCCACGGAGATCCTCTAGATCAGGTTACGGAGCTCGTAGATCAGACATGTCTAGATTAGAACACCGTTTTTAGAGCTTGGAACAGAACTTTAGCCGCCGAGATCGCAGCTAAACAAGTCTAGCCGTGCTGGGTTAGCGAGCTAaccgttagctagctagcttagccggCTAACGTTGCTCTCCAACTTCGCTGGGCCTTTCTTCTTACTCTCATGCTCTGCCAACCTGAAGGAAGATGGTATCGTGGATTATATCGAGGACCGTTGTGCTGGTCTTTGGGACCCTCTACCCAGCGTACAACTCCTACAAAGCAGTGAAAACCAAAAATGTCAAAGAATATGTCCGCTGGATGATGTACTGGATTGTTTTTGCACTCTACACAGTAGTGGAGACCATCACAGACCTCACTGTAGCCTGGTTTCCCCTGtattatgaaataaagattGCCTTTGTGATCTGGCTCCTGTCGCCCTACACAAGAGGAGCCAGTCTTATCTACAGAAGGATCCTGCATCCTCTTCTGACTTCAAGAGAAAGGGAAATTGATGACTACATTGTTCAAGCTAAAGAGCGCAGCTATGAGACCATGCTGAACTTTGGCAAGCAGGGACTAAGTATAGCAGCTACTGCAGCTGTCACTGCAGCTGTCAAGGGGCAGGGTGCCATCACGGAGAAGCTGAGGAGCTTCAGCATGGCCGACCTGACCCAGATCCCGCAGGATGAGGCCGGCGGCCAGATGTACCCTGCCTACTCCAGCTCTAACCCGGCCAGGAGAGGCGCAGGCACCACCCAGCACGACGTAGTCGATTATTACCAGTATGAGCAGGAGGAGCGGACAGATGAAGATGGCGAGGGTGATGGTGTGTTCTCCGAGGACGAGGCTTTGACGCAGCGTGGAGTCAGAAGATCGCAGAGTGTTAAAGTGACGCGCTCCAGACTACGCAAAGATGCCCGTTATGGATCCCTGAAGATCAAAGGGCGGCGAAGGCCAGTACTGAACACTATGACGTACGCCAGCACTGACCAGTGACTACTGACCCAGGAGAGCTCTATCCACAGAAACCTAATGAGTGTTAATAATACCTTCTTCTTTTAATGGCTGTGGGATCCATTCTTGTGCTGAACATCCTGTAGGTTTTtaatgcaacacacacacacacacacatatttattttattaaaatccaAGTTTTAACCAAAAACACAAGTGTGCACATGTACATTATGAGCAATAATGTGGAATTTCAGGGGCTTTTCTTCttgttgtagtttttttattgcttgGTGACCTTTTTCTGAATTTGACATTCAGTCAAATctattagtatttttatatttgctaGTGTTTAAAGTGTTCACAGCTAGAACTGTATTCTATCGGATGTGGGTTTTGTGctcttgttgttttgtgtgtctCTTGTGCTGCCTTGTTTATTACagattttaaattagattttttttccatttctaatTAAATGCATAATGATAACACTGACACTTGAATACAATCAGACCAAAAGTGACCCTTaccattaaaggaaaaaaacaccaaaatgaATGAAGGGGATTCagatcattatattattataagtattggTGAAGGTGgactacattttaaatgtgtggTTGTGTTTCCGTTTCTGATGGTttcttttttgcacattttcatcATTTTCTTGTCCATCATCTCAGTGCAGAATGTACCCCTAGTCTGGGAAGAGGACCATCTTATCTACATATACCAAAGTGTTACAATCCACTATATCAGGTGGATGAAATGTGGGAATGTTTGTCTGAATGTGTCATAAGTCTAAATTAACGTGCTGGTATGATTGAATAAACATTGAAAATTTGAAATCAAa
>XM_022669202.1
GCGCACCTTGCTAGCCGTACGGCCCCAAGGCAGTGTCGGTTAGGTGGAGGGATCGAAGGCGCTGGGCGAGCCAAAACAAAACTAGCCACGGAGATCCTCTAGATCAGGTTACGGAGCTCGTAGATCAGACATGTCTAGATTAGAACACCGTTTTTAGAGCTTGGAACAGAACTTTAGCCGCCGAGATCGCAGCTAAACAAGTCTAGCCGTGCTGGGTTAGCGAGCTAaccgttagctagctagcttagccggCTAACGTTGCTCTCCAACTTCGCTGGGCCTTTCTTCTTACTCTCATGCTCTGCCAACCTGAAGGAAGATGGTATCGTGGATTATATCGAGGACCGTTGTTCTTTtgggaaaaggagaaaaagaaaataaagaaataaaggaatagAAGAACAAAGGAACCTACTTTTGTAAATGACTTGGCTGGTCTTTGGGACCCTCTACCCAGCGTACAACTCCTACAAAGCAGTGAAAACCAAAAATGTCAAAGAATATGTCCGCTGGATGATGTACTGGATTGTTTTTGCACTCTACACAGTAGTGGAGACCATCACAGACCTCACTGTAGCCTGGTTTCCCCTGtattatgaaataaagattGCCTTTGTGATCTGGCTCCTGTCGCCCTACACAAGAGGAGCCAGTCTTATCTACAGAAGGATCCTGCATCCTCTTCTGACTTCAAGAGAAAGGGAAATTGATGACTACATTGTTCAAGCTAAAGAGCGCAGCTATGAGACCATGCTGAACTTTGGCAAGCAGGGACTAAGTATAGCAGCTACTGCAGCTGTCACTGCAGCTGTCAAGGGGCAGGGTGCCATCACGGAGAAGCTGAGGAGCTTCAGCATGGCCGACCTGACCCAGATCCCGCAGGATGAGGCCGGCGGCCAGATGTACCCTGCCTACTCCAGCTCTAACCCGGCCAGGAGAGGCGCAGGCACCACCCAGCACGACGTAGTCGATTATTACCAGTATGAGCAGGAGGAGCGGACAGATGAAGATGGCGAGGGTGATGGTGTGTTCTCCGAGGACGAGGCTTTGACGCAGCGTGGAGTCAGAAGATCGCAGAGTGTTAAAGTGACGCGCTCCAGACTACGCAAAGATGCCCGTTATGGATCCCTGAAGATCAAAGGGCGGCGAAGGCCAGTACTGAACACTATGACGTACGCCAGCACTGACCAGTGACTACTGACCCAGGAGAGCTCTATCCACAGAAACCTAATGAGTGTTAATAATACCTTCTTCTTTTAATGGCTGTGGGATCCATTCTTGTGCTGAACATCCTGTAGGTTTTtaatgcaacacacacacacacacacatatttattttattaaaatccaAGTTTTAACCAAAAACACAAGTGTGCACATGTACATTATGAGCAATAATGTGGAATTTCAGGGGCTTTTCTTCttgttgtagtttttttattgcttgGTGACCTTTTTCTGAATTTGACATTCAGTCAAATctattagtatttttatatttgctaGTGTTTAAAGTGTTCACAGCTAGAACTGTATTCTATCGGATGTGGGTTTTGTGctcttgttgttttgtgtgtctCTTGTGCTGCCTTGTTTATTACagattttaaattagattttttttccatttctaatTAAATGCATAATGATAACACTGACACTTGAATACAATCAGACCAAAAGTGACCCTTaccattaaaggaaaaaaacaccaaaatgaATGAAGGGGATTCagatcattatattattataagtattggTGAAGGTGgactacattttaaatgtgtggTTGTGTTTCCGTTTCTGATGGTttcttttttgcacattttcatcATTTTCTTGTCCATCATCTCAGTGCAGAATGTACCCCTAGTCTGGGAAGAGGACCATCTTATCTACATATACCAAAGTGTTACAATCCACTATATCAGGTGGATGAAATGTGGGAATGTTTGTCTGAATGTGTCATAAGTCTAAATTAACGTGCTGGTATGATTGAATAAACATTGAAAATTTGAAATCAAa

Function

symbol description
reep3 Predicted to enable microtubule binding activity. Involved in mitotic nuclear membrane reassembly. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network.

NR:

description
receptor expression-enhancing protein 3 isoform X1

GO: NA

KEGG:

id description
K17338 REEP1_2_3_4; receptor expression-enhancing protein 1/2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255112.3 False 1944 mRNA 0.44 8 16715892 16752203
XM_022669202.1 True 2025 mRNA 0.44 9 16715891 16752203

Neighbor

gene id symbol gene type direction distance location
nrbf2 nrbf2,LOC108437426,LOC107654066,LOC107593503 coding upstream 188644 16407964 ~ 16527247 (+)
LOC103046195 NA coding upstream 255978 16457415 ~ 16459913 (+)
arid5b arid5b,LOC107727057 coding upstream 318503 16258160 ~ 16397388 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding upstream 540696 16149838 ~ 16175195 (+)
LOC103023844 LOC108443155,LOC106596407,LOC107689097 coding upstream 904038 15808205 ~ 15811853 (+)
tubgcp2 tubgcp2,gcp2 coding downstream 177308 16929511 ~ 16943394 (+)
LOC103036473 myof coding downstream 192861 16945064 ~ 16998115 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 295381 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 316733 17068936 ~ 17079779 (+)
LOC103032462 cunh16orf52,c16orf52.L,c17h16orf52,C20H16orf52,LOC102224510,LOC106518731,LOC108258941 coding downstream 330110 17082313 ~ 17092610 (+)
G36852 NA non-coding upstream 146499 16540984 ~ 16569392 (+)
LOC111192379 NA non-coding upstream 175877 16529150 ~ 16540014 (+)
G36783 NA non-coding upstream 504194 16211045 ~ 16211697 (+)
G36722 NA non-coding upstream 790044 15924785 ~ 15925847 (+)
G36721 NA non-coding upstream 791177 15922772 ~ 15924714 (+)
G36915 NA non-coding downstream 84323 16836526 ~ 16837964 (+)
LOC103038048 NA non-coding downstream 110867 16863070 ~ 16866954 (+)
G36959 NA non-coding downstream 184809 16937012 ~ 16938031 (+)
G36957 NA non-coding downstream 268063 17020266 ~ 17020567 (+)
G36962 NA non-coding downstream 270565 17022768 ~ 17023415 (+)
cabcoco1 NA other upstream 482052 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1275734 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 1925058 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 2147979 14564925 ~ 14567912 (+)
G36371 NA other upstream 2252252 14463137 ~ 14463639 (+)
sun1 NA other downstream 248179 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 449294 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 480617 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 498778 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 545276 17297479 ~ 17340892 (+)

Expression


Co-expression Network