LOC103046195


Basic Information

Item Value
gene id LOC103046195
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16457415 ~ 16459913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255116.3
GATCAGATAGACATGAATGGGGCGGTGGAAGGGAGAGTGTGCGGGACGGAGCTAGTAGCGTTAAGTGACTAACCGtcataaataaaagcttaaaaatgaaaatgtgaccCGGGAATGGGAAGTTTTGAGGCGTTGAAGAGGTTTAACTGACTCCTGCGGTGAGCAGCCGGTGGAGTTAGGGTGTTGTGGGGGACAGCAGGAGGATTTGTggctgttttttgtgttgttttttgttccTTTCAGCAAGAACCGTGAAGATACGTAGCAAAAAGCTAAAAGAACGGCAAGAATGCCACTGAACGGCAAGTCCTCGCTTATCCAGCAGATAGCTAACAAGGCTAACTTGGCCTATAAAAGCTGCTCTCCCGCGGACAGTAAAGACTTCTCCGCTCGGCGCTCCGAGCTCTCCGCTCTGCTGGCGGAGCTCCGGGCCGCAGACCTCAACATCTCGCCGCCCAAGAAGAGCTCCAACTCGGGCTCCGGCTCCAGCGCGGCGCCGGTCACCTACATGCACATCTGTGAGACTGACGCCTTCAGCATGGGGGTCTTCCTACTGAGGAGCGGTTGCTCTATTCCACTGCACGACCACCCGGACATGCACGGCATGCTGAAGGTGCTTTATGGGAAGGTACGGATCAGGTGCTTTGATAAGCTGGAGAGACCCCAGAATGCTGGGGTCTCTGAGGATGGGGGAGGAGGGCCTTCCCAGCCCCAGTCCTCACAGTCTCCTTCCCAAGAAGCCTCTCCTGTGTGGCAGGCTGAGCTCAGATCCACCAGCGAGTTCACAGAGCACAGCAGCCCCTGTTTGCTGACTCCTTTGAGGGACAACCTGCACCAGATCGAGGCGATAGAAGGTCCAGCCGCCTTCCTTGACATCCTGGCACCACCTTACGATCCTGATGAGGGGAGGGACTGCCACTACTACAGGGTCAtacacactgagagaaacagcaaggaggaggaggaggtggaggagatgttgctgctgctggagatCCCCCAGCCTGATGACTTCTGGTGTGGGGGAGAGCCTTACCCCGGGCCAGAGGTTTCCCTTTAATTTAAGATCCAAGGACAGCTTTGGACTGAACTTTATCCAGCACTGGAATCCAGTTTTAGTCCAAGCTTAGTCGTTGAGACCTTGGTCGTTGTCTCCAGGAGCATTGACCTCTCAACAGCCTCATGCCACTAACCTACATCACAGACAGTATATACACACCCCTCTTCTGGCCTTCAGGCAGAGCTAAAGGTTGATCAAGACGACCTTAATGCCTGAGGATTTGGAAACATTTTTCTACAAAAATTGACTGACATAAGTGACCAATAACATTGAACATAACTTGAAGACCAGTTGCCtttcttaaaatattgaatGTTATCTTGCCTTTAAAGTTTATACTCTTGTCTAACTAAACACTACATAGCCtgtattactattaatattattatggacgtgcattatttatttatagcaaagtgttttatttgttcGTACAATCAGTTATAAATCATATTCTTGCTAAAAGTTTATATATTgactttaaaacacaaaaaattaaaatgtttatgataccctattcatttttttcattttttaatctgGTCCTCTGAACATTTATTGCCTGGTCAGTGTAGCTTGCTTGTAAAAGCACCAGCCCTCCTCCACTGGCTCTATTATGGCATGGGTTACTCTCTCATGGTTTAAGACCAGAGAAGGGGAAATCCTTGATAATGCCAGGATTTTATTGGTTCAGTTGAAGCAGCTGCAGAGCCTGCAGTATGTAAATGAAGTTAGCATTTATAGTGTTGGCTGTGGTGTTCATCAAGTAGCCCAGTCTACATTGTTCACTGTGTAATTGCAGCTTTCTGTGTGAACCGACTTCGCCTCCTCACTTTGACTTGTCATTATGAATCGCTTGGAAGCTGTCATGGGTGGTGCGATGTCACTGGTGACTGCATGCGTGAGATTgaggggaggaaaaaaaacggTTAATCACGCACATAGAGGAAGTTGGTGATGTATAGTAAATTCATGGAAACTTACAGTTTCATGGAGCAATAGTCTTTATGGCTCAGTCTGATTTACTTTTTGTGATTCTGAAATGActggtgtgtgtaatgtctgTGCTGAGGGCCTTACACCTGGGATAATCTGGACTGAGCCTGGTAAAATCACCTCTGTATATGACCGTGCTTCTTAGTCCTGGTACTGGAGGTGCgttgccctgcacattttagtggtttAGTGCTTTAACACACCCACTGACACAGTAACAAACTATCTATTCAGTGTGTTGAGAAGGGAAATCAATAAATGTTCAGTGCACAGTGCAGAATTCAACATTAACACTGTTGATtaaacactgtcaaaattaCTGTGTACGGTCAGATAACTGtgttttagcattttaattCAGGCTAGTTCACGCAGattctatattattatttttttattctgtaaactgttataaatataaaaattggcATATATGTCCCACA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K10712 ADO; cysteamine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255116.3 True 2499 mRNA 0.46 1 16457415 16459913

Neighbor

gene id symbol gene type direction distance location
arid5b arid5b,LOC107727057 coding upstream 60027 16258160 ~ 16397388 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding upstream 282220 16149838 ~ 16175195 (+)
LOC103023844 LOC108443155,LOC106596407,LOC107689097 coding upstream 645562 15808205 ~ 15811853 (+)
LOC103033971 NA coding upstream 784971 15621311 ~ 15672444 (+)
LOC103028270 mpp2,LOC108410806,LOC108273574 coding upstream 936821 15441567 ~ 15520594 (+)
LOC103044975 reep3,LOC108412837 coding downstream 255978 16715891 ~ 16752203 (+)
tubgcp2 tubgcp2,gcp2 coding downstream 469598 16929511 ~ 16943394 (+)
LOC103036473 myof coding downstream 485151 16945064 ~ 16998115 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 587671 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 609023 17068936 ~ 17079779 (+)
G36783 NA non-coding upstream 245718 16211045 ~ 16211697 (+)
G36722 NA non-coding upstream 531568 15924785 ~ 15925847 (+)
G36721 NA non-coding upstream 532701 15922772 ~ 15924714 (+)
G36705 NA non-coding upstream 559250 15897181 ~ 15898165 (+)
G36707 NA non-coding upstream 571542 15882457 ~ 15885873 (+)
LOC111192379 NA non-coding downstream 69237 16529150 ~ 16540014 (+)
G36852 NA non-coding downstream 81071 16540984 ~ 16569392 (+)
G36899 cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679 non-coding downstream 273699 16733612 ~ 16792600 (+)
G36915 NA non-coding downstream 376613 16836526 ~ 16837964 (+)
LOC103038048 NA non-coding downstream 403157 16863070 ~ 16866954 (+)
cabcoco1 NA other upstream 223576 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 1017258 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 1666582 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 1889503 14564925 ~ 14567912 (+)
G36371 NA other upstream 1993776 14463137 ~ 14463639 (+)
sun1 NA other downstream 540469 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 741584 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 772907 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 791068 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 837566 17297479 ~ 17340892 (+)

Expression


Co-expression Network