nrbf2 (nrbf2,LOC108437426,LOC107654066,LOC107593503)


Basic Information

Item Value
gene id nrbf2
gene name nrbf2,LOC108437426,LOC107654066,LOC107593503
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16407964 ~ 16527247 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255119.3
GGCTGCTGGCACTGTTATGTTGTgaagtgaaaaattaatcccTCTGGagcagagaaaagaaaacagaagaagctggaagaaaagaaaaacaacactaaGGTTTCCAGTGGAGATCTGTCAGATTCTGCGTTTTACCAAAACCCGGTGGAGGCTGTTGGAGGCTTGGTGAAACCCAAAGGCCGGACAGCTTCTTGTTTCGAGTTGAGTCTGCACGGATTGCGGTGATGGATGGTGCTTCATGACTGAGCAATGGATATAGAGagCATGGGCACGTGGCTGAGGGGCTACGGGTCACAGCCCAGCACCATCTCCCTCATTACCCAGCATCCTCTCCATCATTGACTTCTGCCTCCTCAATCAGCTCCAGCAGCCATTAACACTAATGTTCTGCAGAGCGGCGGAGAGACTGGACGCTGGACGCAGGAGTGTTCTGACCGCTGTGGCAGGGCAGGGTCCACCGAGACACACTCGGGCCCATCAGCAGTGCAGAAAAGCAGACCGCTTTCTGGCTGCTGGGAAGTATGAAGAGGCCATCTCTTGCCATAGAAAGGCTGCAGAACTTCTGAAGGATGCAATGAAGCTCACAGAATGTGAACAGGCTCGCCTGTCTCTGGAGCTGCAGAGGGACAGTCATGTGAAGCAGCAGCGACTGATCGAGGAGAGGTGGAAGCGGTCCAGGCGAGAGGGCAAGCCAAGAATTCTCCAGACCACCCTGTCCTCAGAGCAGCCCCCTCACCTCCAGCCCGGTGCCTCTGCTTCTCCTGGCCTAGCTGCCAGTTCAGACCGTGAACGTGAGTACGACACTTGGCTGTACCTGCTGAAGAACAAGAGCCCCCACCAGGAGCCGTGCCCCGGCAGCAAGGCCCACAAAGACGACAAGACGCGGCTGGAGGAACAGCAGACCACCATTGATGACTTGCGGCGTTTGGTGGACCGGCTGGTGGGTGAGAATGAGCAGCTCACTCGGGACAACGAAAGGTTGCGGGCGGAAAACTCCCGGCTGCGCAAAGAGCCATACGCTGATGCTGACTTTGTGGAGAAGTCGGAGCTTTGGGTGCTGCCGCACGCGGCCGAGGAGCGCAAGGCTAAGGACATTCCCATCCCGCACCTGCCGCCACTAGAGATGCCTCAGGAGATCCCTCTGGAGGACCTGCCTGCTCTGGAGCTGCCTGAGGACATCCAGCAGGAGCTTCAAGAGCTGCTAGATGGAGAGAAGCTCTAGGCACCTGCCCGTTCACTTGCCAAAGGGAGACGATCGTGCTGTCTGTCAGAAGTTTGCAGACAGGGAAATTTAGTGAATTTCTGGCCTGCACAGTGGCATAGCTCTAGATGGCATAAATGGCTTGTGTTAAGCCATCAGatgctttattgttttttttttgtttgtttttttttctctctctttaatgaTCCCCCTCCTTTCCCTTCCAAGGTACTGCAGCTATTTGATATAAGAtgaaacaaactaaaaacattatgaACTCATTTTGCAAGACTTGtgcctttttaaatatttctatgGTGTAATTAAGTCCTAtgagataaaagaaaaaaagggactGATGACTGATGACAAGAATATATGTTGCTTTGTGGAAGcttgattgtaaaaaaaaaaaaaagtgctggaaGCGCTCGACTGATTTGTTCAGACTGGCATTCGTCAGGAATAAACTAGGGGCTTTCAGAGACCCCCTGTTTAAAATGcaaaagatatttttttctccccacacagacacagacagtgaGCACTGTGAACTACatcagaaagtgtgtgtgtgttagaatgagatacagagtgtgtgtgattgcgtgtttgtgtggtttCCTGACTTGTTGCAAATTGTGAAAATTGTAAACGTGGAGTTTCATTGCCTCTGTTTGTGTCCTGTCATTTCCAGTGTCCACCTGAGAAACAGCTACAGGATGATTTTTTTCAGTAGTCTGTCCTGTGGAGACCAGTGTCTTAAAGCTGGACGTCTTCTGTGCAGTTATAGTCTTAGTTATGAATTtgacacacacattttatcCAGCTTCACACAAAACCTGCTTGTGAAGAATTTCCCCACCACAAAAAATGTTGTGTTGATTTCTGGaaccaataaaaacaaattgacaaACAACCATCTACCAACTAACCAATCAAGCAATAACATGATACAGTCTCCAGTTACGCAAGGAAGCGCAGTCATTCATCATAAAGGGGGCTTtccaatgcatttttttgtccGTGTGTCTTTATTGTAACTTAGTCATTTTGTGGCGTTTTGGAATCGCAGTAGCTGCACAAATCTCTAGTCTCAGTTCCACAGCCACGTCGAAATGGAAATGGAAGAAACTGAAGCCTTTCCCAACTGTCCAAGTCAGGATATTTGCGAACTATCTCAAACATAAAgttgttttaatataatatatataaatattttgtttgttttttgtttttctgatgcCTAATTTGTACTGTAATCAATCAACAATTGATTGTTTTGATCACACAGTTAATATTTTTCAGGtaactgtgtgtttttactttGAATATGCAGGATGAGTGAGTGCATACACAATCACACAGCATATAACAATGTCAGGTTACGCTACATCACACTAATCGAGAGTAATTTAACTAGTGCCACATGCGAGAGAGAACAAGGAGTGCTtcatgtttagttttattttatttttttaatgtgatgcAGAGATGATCTGAAATGAATCATATTTGTGTCACGAAGAGGGAACCAAAtccactttttttaatttaatgttgaaATTGAATTCTTGGTTTACAGCAGTAATCAGGGTGCATCTGAATTGTTTTCTCTtccattttgtttgtttctgtgtgaTGTAAAAATCTTCAAGAATCATATGATGAAAGTGTAACTTTTTTGTTTCATGCATGAATGGCAGTTGTAGCTATAAGTATATGATGGATAAGATATTAAAATGAGGATTTATGTCACGGCTCA
>XM_007255120.3
agagagcgagcgagagagagactccTGAGTCTGTTGTTTCTCTCCGTCTCTGCTGTGATCAGTCCGGTGTAACCAGAGCACCTGGTTCCGGACTAAACCCAGTGCCAATGACCGTGTGTGAGCAGCACCGCGCACTCTGATGTAGTTAATGGTCTCTACTCTGATAAGGAATGGAGGTGGTGGACAGTCCTCTGAACCTCGCCCATCAGCAGTGCAGAAAAGCAGACCGCTTTCTGGCTGCTGGGAAGTATGAAGAGGCCATCTCTTGCCATAGAAAGGCTGCAGAACTTCTGAAGGATGCAATGAAGCTCACAGAATGTGAACAGGCTCGCCTGTCTCTGGAGCTGCAGAGGGACAGTCATGTGAAGCAGCAGCGACTGATCGAGGAGAGGTGGAAGCGGTCCAGGCGAGAGGGCAAGCCAAGAATTCTCCAGACCACCCTGTCCTCAGAGCAGCCCCCTCACCTCCAGCCCGGTGCCTCTGCTTCTCCTGGCCTAGCTGCCAGTTCAGACCGTGAACGTGAGTACGACACTTGGCTGTACCTGCTGAAGAACAAGAGCCCCCACCAGGAGCCGTGCCCCGGCAGCAAGGCCCACAAAGACGACAAGACGCGGCTGGAGGAACAGCAGACCACCATTGATGACTTGCGGCGTTTGGTGGACCGGCTGGTGGGTGAGAATGAGCAGCTCACTCGGGACAACGAAAGGTTGCGGGCGGAAAACTCCCGGCTGCGCAAAGAGCCATACGCTGATGCTGACTTTGTGGAGAAGTCGGAGCTTTGGGTGCTGCCGCACGCGGCCGAGGAGCGCAAGGCTAAGGACATTCCCATCCCGCACCTGCCGCCACTAGAGATGCCTCAGGAGATCCCTCTGGAGGACCTGCCTGCTCTGGAGCTGCCTGAGGACATCCAGCAGGAGCTTCAAGAGCTGCTAGATGGAGAGAAGCTCTAGGCACCTGCCCGTTCACTTGCCAAAGGGAGACGATCGTGCTGTCTGTCAGAAGTTTGCAGACAGGGAAATTTAGTGAATTTCTGGCCTGCACAGTGGCATAGCTCTAGATGGCATAAATGGCTTGTGTTAAGCCATCAGatgctttattgttttttttttgtttgtttttttttctctctctttaatgaTCCCCCTCCTTTCCCTTCCAAGGTACTGCAGCTATTTGATATAAGAtgaaacaaactaaaaacattatgaACTCATTTTGCAAGACTTGtgcctttttaaatatttctatgGTGTAATTAAGTCCTAtgagataaaagaaaaaaagggactGATGACTGATGACAAGAATATATGTTGCTTTGTGGAAGcttgattgtaaaaaaaaaaaaaagtgctggaaGCGCTCGACTGATTTGTTCAGACTGGCATTCGTCAGGAATAAACTAGGGGCTTTCAGAGACCCCCTGTTTAAAATGcaaaagatatttttttctccccacacagacacagacagtgaGCACTGTGAACTACatcagaaagtgtgtgtgtgttagaatgagatacagagtgtgtgtgattgcgtgtttgtgtggtttCCTGACTTGTTGCAAATTGTGAAAATTGTAAACGTGGAGTTTCATTGCCTCTGTTTGTGTCCTGTCATTTCCAGTGTCCACCTGAGAAACAGCTACAGGATGATTTTTTTCAGTAGTCTGTCCTGTGGAGACCAGTGTCTTAAAGCTGGACGTCTTCTGTGCAGTTATAGTCTTAGTTATGAATTtgacacacacattttatcCAGCTTCACACAAAACCTGCTTGTGAAGAATTTCCCCACCACAAAAAATGTTGTGTTGATTTCTGGaaccaataaaaacaaattgacaaACAACCATCTACCAACTAACCAATCAAGCAATAACATGATACAGTCTCCAGTTACGCAAGGAAGCGCAGTCATTCATCATAAAGGGGGCTTtccaatgcatttttttgtccGTGTGTCTTTATTGTAACTTAGTCATTTTGTGGCGTTTTGGAATCGCAGTAGCTGCACAAATCTCTAGTCTCAGTTCCACAGCCACGTCGAAATGGAAATGGAAGAAACTGAAGCCTTTCCCAACTGTCCAAGTCAGGATATTTGCGAACTATCTCAAACATAAAgttgttttaatataatatatataaatattttgtttgttttttgtttttctgatgcCTAATTTGTACTGTAATCAATCAACAATTGATTGTTTTGATCACACAGTTAATATTTTTCAGGtaactgtgtgtttttactttGAATATGCAGGATGAGTGAGTGCATACACAATCACACAGCATATAACAATGTCAGGTTACGCTACATCACACTAATCGAGAGTAATTTAACTAGTGCCACATGCGAGAGAGAACAAGGAGTGCTtcatgtttagttttattttatttttttaatgtgatgcAGAGATGATCTGAAATGAATCATATTTGTGTCACGAAGAGGGAACCAAAtccactttttttaatttaatgttgaaATTGAATTCTTGGTTTACAGCAGTAATCAGGGTGCATCTGAATTGTTTTCTCTtccattttgtttgtttctgtgtgaTGTAAAAATCTTCAAGAATCATATGATGAAAGTGTAACTTTTTTGTTTCATGCATGAATGGCAGTTGTAGCTATAAGTATATGATGGATAAGATATTAAAATGAGGATTTATGTCACGGCTCA

Function

symbol description
nrbf2 Involved in autophagy. Located in cytoplasm. Colocalizes with phosphatidylinositol 3-kinase complex, class III.

NR:

description
PREDICTED: nuclear receptor-binding factor 2-like

GO: NA

KEGG:

id description
K21246 NRBF2; nuclear receptor-binding factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255119.3 True 2969 mRNA 0.45 6 16407964 16527247
XM_007255120.3 False 2697 mRNA 0.44 4 16519960 16527247

Neighbor

gene id symbol gene type direction distance location
arid5b arid5b,LOC107727057 coding upstream 10576 16258160 ~ 16397388 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding upstream 232769 16149838 ~ 16175195 (+)
LOC103023844 LOC108443155,LOC106596407,LOC107689097 coding upstream 596111 15808205 ~ 15811853 (+)
LOC103033971 NA coding upstream 735520 15621311 ~ 15672444 (+)
LOC103028270 mpp2,LOC108410806,LOC108273574 coding upstream 887370 15441567 ~ 15520594 (+)
LOC103044975 reep3,LOC108412837 coding downstream 188644 16715891 ~ 16752203 (+)
tubgcp2 tubgcp2,gcp2 coding downstream 402264 16929511 ~ 16943394 (+)
LOC103036473 myof coding downstream 417817 16945064 ~ 16998115 (+)
LOC103034053 rac1,RAC1,rac1a,LOC105898786,LOC108412270,LOC108437155,LOC107569188 coding downstream 520337 17047584 ~ 17054418 (+)
LOC103033077 LOC108412267,LOC108274277,LOC107596603,LOC107695555 coding downstream 541689 17068936 ~ 17079779 (+)
G36783 NA non-coding upstream 196267 16211045 ~ 16211697 (+)
G36722 NA non-coding upstream 482117 15924785 ~ 15925847 (+)
G36721 NA non-coding upstream 483250 15922772 ~ 15924714 (+)
G36705 NA non-coding upstream 509799 15897181 ~ 15898165 (+)
G36707 NA non-coding upstream 522091 15882457 ~ 15885873 (+)
LOC111192379 NA non-coding downstream 1903 16529150 ~ 16540014 (+)
G36852 NA non-coding downstream 13737 16540984 ~ 16569392 (+)
G36899 cyp26a1,LOC103044660,LOC108412396,LOC108273895,LOC107739064,LOC107596578,LOC107695519,LOC107653962,LOC107593523,LOC107745679 non-coding downstream 206365 16733612 ~ 16792600 (+)
G36915 NA non-coding downstream 309279 16836526 ~ 16837964 (+)
LOC103038048 NA non-coding downstream 335823 16863070 ~ 16866954 (+)
cabcoco1 NA other upstream 174125 16213790 ~ 16233839 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other upstream 967807 15432829 ~ 15440157 (+)
G36439 LOC103041415 other upstream 1617131 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 1840052 14564925 ~ 14567912 (+)
G36371 NA other upstream 1944325 14463137 ~ 14463639 (+)
sun1 NA other downstream 473135 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 674250 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 705573 17232820 ~ 17234559 (+)
LOC103027613 cdc42ep1,LOC106609444,LOC105025094,LOC106589540,LOC107734237,LOC107584101,LOC107690062 other downstream 723734 17250981 ~ 17282231 (+)
tnrc6b tnrc6b other downstream 770232 17297479 ~ 17340892 (+)

Expression


Co-expression Network