psmc5 (psmc5,LOC107745657,LOC107753303)


Basic Information

Item Value
gene id psmc5
gene name psmc5,LOC107745657,LOC107753303
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15541100 ~ 15547570 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255143.3
TTTAGGGATACAGCAGTGAGGGACCGGGCTGAAGCGGCGGAGGGCTCCGCTGGAGGGCGCTGTCGAGTTTCTACAAAACAGACAGCCACTGCGCGCTGCGCTGAAAATGGCGCTGGACGGACTCGACCATATGGAGTTGGAGGAAAGTAAAGGTGGCTCAGGCCTCCGGCAGTATTATCTGTCTAAAATAGAAGAGTTACAGTTGACAGTGAATGAAAAAAGCCAGAATCTCAGACGTCTGCAGGCCCAGAGGAACGAGCTAAATGCCAAAGtgcGTCTCTTGCGGGAGGAACTGCAGCTGCTTCAGGAGCAGGGCTCCTATGTAGGCGAGGTGGTCCGAGCTATGGACAAGAAGAAGGTCCTAGTAAAGGTTCATCCTGAGGGCAAGTTTGTGGTGGATGTGGACAAAAACATTGACATTAATGATGTGACTCCAAATTGCCGTGTAGCACTTCGTAACGACAGCTACACATTGCACAAGATTCTGCCCAATAAAGTGGACCCACTGGTTTCTTTGATGATGGTTGAGAAAGTGCCTGATTCCACTTATGAGATGATCGGTGGTCTGGACAAACAGATCAAAGAGATCAAGGAGGTGATCGAGCTGCCTGTGAAGCATCCTGAGCTGTTTGAGGCCCTTGGAATTGCACAGCCTAAGGGGGTGCTGTTGTATGGACCACCTGGCACAGGAAAGACGCTGCTGGCCCGAGCTGTGGCTCACCACACAGACTGCACATTCATCAGAGTGTCCGGCTCCGAGCTGGTGCAGAAGTTCATTGGCGAGGGAGCCCGTATGGTGCGTGAACTGTTCGTTATGGCCCGTGAGCATGCACCCTCCATCATTTTTATGGATGAGATTGATTCGATTGGTTCCTCTCGACTGGAGGGAGGTTCTGGAGGGGACAGCGAGGTGCAGAGGACCATGCTGGAGCTTCTCAATCAGCTGGATGGATTTGAGGCCACCAAGAATATTAAGGTCATCATGGCCACTAACCGTATTGACATTCTGGACTCTGCTCTGCTCAGACCTGGACGCATTGACAGGAAGATTGAGTTTCCCCCTCCTAATGAAGAGGCCCGTTTGGACATTCTGAAGATCCACTCCCGCAAGATGAACCTGACCCGTGGAATAAATTTGAGGAAAATTGCAGAGCTAATGCCAGGAGCTTCAGGCGCCGAGGTCAAGGGTGTCTGCACTGAGGCTGGTATGTACGCTCTTCGAGAGAGGAGAGTTCACGTCACCCAGGAAGACtttgaaatggctgttgcaaagGTGATGCAGAAAGACAGCGAGAAAAATATGTCCATCAAGAAGCTCTGGAAGTAGAGCCTCCAGCAACGCCTGGCAGCCCTCAcctatattgttttgttttcttttgtgacTTGATTTATAATTGTTacctaaatttattttaaataaacggTATCTCCTGCTAagactttg

Function

symbol description
psmc5 Predicted to enable TBP-class protein binding activity and thyrotropin-releasing hormone receptor binding activity. Predicted to be involved in modulation of chemical synaptic transmission; positive regulation of RNA polymerase II transcription preinitiation complex assembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex; nuclear proteasome complex; and proteasome regulatory particle, base subcomplex. Predicted to be active in postsynapse. Orthologous to human PSMC5 (proteasome 26S subunit, ATPase 5).

NR:

description
PREDICTED: 26S protease regulatory subunit 8

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0031531 thyrotropin-releasing hormone receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03066 PSMC5, RPT6; 26S proteasome regulatory subunit T6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255143.3 True 1444 mRNA 0.50 12 15541100 15547570

Neighbor

gene id symbol gene type direction distance location
LOC103031644 LOC108424598 coding downstream 425988 15094604 ~ 15115112 (-)
med24 med24,LOC107660474,LOC107678252 coding downstream 456078 15040534 ~ 15085022 (-)
trnal-caa_19 NA coding downstream 584343 14956645 ~ 14956757 (-)
trnal-caa_18 NA coding downstream 584750 14956238 ~ 14956350 (-)
trnal-caa_17 NA coding downstream 585156 14955832 ~ 14955944 (-)
smarcd2 smarcd2,LOC107569192,LOC107684754 coding upstream 5021 15552591 ~ 15565917 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding upstream 25210 15572780 ~ 15580758 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding upstream 35055 15582625 ~ 15611422 (-)
LOC103025516 NA coding upstream 175689 15723259 ~ 15737075 (-)
LOC103024156 NA coding upstream 198714 15746284 ~ 15769469 (-)
LOC111192377 NA non-coding downstream 13803 15514858 ~ 15527297 (-)
G36632 NA non-coding downstream 86290 15382512 ~ 15454810 (-)
G36634 NA non-coding downstream 129092 15407460 ~ 15412008 (-)
G36629 ki67 non-coding downstream 144063 15393011 ~ 15397037 (-)
G36550 NA non-coding downstream 341063 15199822 ~ 15200037 (-)
G36657 NA non-coding upstream 1309 15548879 ~ 15549079 (-)
G36664 NA non-coding upstream 60521 15608091 ~ 15679306 (-)
G36678 NA non-coding upstream 208186 15755756 ~ 15760772 (-)
LOC111192406 NA non-coding upstream 243527 15791097 ~ 15795369 (-)
G36681 NA non-coding upstream 253460 15801030 ~ 15801264 (-)
c4h10orf88 LOC103041415 other downstream 743888 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 2040923 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2229575 13307088 ~ 13311525 (-)
G36074 NA other downstream 2829555 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 3468673 12067533 ~ 12072427 (-)
G36677 NA other upstream 199830 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 289535 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1366000 16913570 ~ 16915285 (-)
G37183 NA other upstream 1468558 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1500037 17047607 ~ 17062947 (-)

Expression


Co-expression Network