LOC103029312


Basic Information

Item Value
gene id LOC103029312
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15407485 ~ 15423095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255149.3
GTGGTTGAAGTTTCCGGTGTTGTTTAATGCTGCGGGACCGAGCCTCGCTCTGTGGAGGGAGATTTAACTtgtgcttagcttagcttagcattcCTCACTCTCGAGCAGCAGCGTTTCCAGCAGGATGGAGACGAGTGAAGACATCAGGACCACGCCGAGGGGCTTCTACTGCAAACTGTGCAGCATTCACACCCCTAACCGGCCGAGTCTGGAAGCACATTTGAAAGGAAAGAAGCACCAGCACCTCTGCAGGCTGCGGAGCAAGAGGGATGCTCAGGTGGAGAGCAGCATCTATGTCAGCGGCATTAAACCGACTACATCCAGGACGGAGCTCGCTGAGTATTTTGAGCAGTTCGGCCCTGTGTCTGAAATAATCATGGACAAGGACaagGGTTTGTACTCCATAATCGAGTTCAGTGAAGTTAAGAGCACGCAGGCTGTGCTGACTCAGCTGGAGCACCGCCTGCAAGGACTGAAGCTCCGGGTGAAGCCCAGAGAGAAGAAGGAGTTTAAGCTGGCCAGCAAGCCGCCGGACGCCAAGAAATCCCATATAAATTTGGAGAAGCTCAACTATGATCTGTGCCAAACTGCCTCTGTCAATGAGCAGATGCAAAAAGTGGTGGAGACCCTACAGCTGAGTGAAAGTGACCAAAACAGTCGAGAACTTCTTGCTGAGCTGCTGGAGGAAGTGTTTACAGAGTTCCTGCCAGACTGCCAGATCATACCTTTCGGCTCCTCTGTGAACACGTTTGGTGTTCAGTCATGTGACCTGGATCTGGTCTTGGACCTGGAGAACACGAAAGCCTTCCAGTCTCAGGCAAAGAAATCTGAGAAGAAAGGAGAACATAATTCTGAGGACGGTGACTCTGAAGACTCCATTCTCCCAGAGATTGATCTCAACACAGCCACCCCGGCCGAGTTGCTGGACTTGGTGACGGCCGTTCTGAGAAAGTGTGTGCCAGGAGTTTACAAGGTCCAGCCTCAGAAGACAACGCGACTTCCTTTGGTCAGGTTCATCCATCGTGACCTCAATTTACAGGGGGACATCACCATAAACAACAGACTGGCAGTCAGAAACACCCGTTTCCTGCAGCTTTGTTCTGGGCTGGACTCCAGAGTGCGACCGCTGGTCTACACAGTGCGATTCTGGGCCAAACAGAAACATCTAGCAGGGAATCCTTTTGGCGGTGGGCCATTGTTGAATAACTATGCCCTAACGCTGCTGGTCCTGTTCTACCTGCAGAATGTAGACCCACCTATACTGCCTACTGTGGAGAAACTCAAGAGCATGGCATgtgaggaggaggagtgcGTTATTGATGGTTGGGACTGCACCTTCCCCAGTCAGCCAATTAGTGTTCCTCCAAGTAAAAACACAGATGATCTCTGCACTTTGCTTCACGGTTTCTTCAGCTTCTACTCCAAGTTTGATTTCTCTGGATCCGTGGTGTCTCTGCGAGAGGGTCGTTCTCTCCCCATCGCCAGCTTCCTCAGCAGGGATGAGGAGATGCCCGATACTGCagacagctccagctccaaacACAAAAAAGCTGCTGGTCCAAAACTGGGTCCTGTAAACATCCTGGACCCGTTCAACCTTCACCACAATGTGGCAGGGAACCTCAGCGAGCGGACACACAGACACCTCCTCCGAGAGTGCAGCGAAAGCGAGAAGTACTGCCGCAGTCTACAATACCAGCGCAAGTCTGCCAAGGGCAAATCCTGGGGCCTGGTGCGGTTGTTTGCCCCTCGTGTCGAGGGTGGTGCTGGATCCCAGGGTGGCACAGAGAGGTCCCTGAAAATTAGCGTCCCCTTCCAGGCCTCTGTTTTGCCTGAATCCCTAAACAAGAAGTTGAGCTCGTCTGGAGACGCCTTCCGGCTCATCTGGTTTGAGCAGCTGTGCTCTGCGGTGGAGGCTTTGTTTAAAGACATTCTCAAGTGTACCCCGGCTGAGGAGCCTGTGAGCACTCAAGAGCAGAACAAGACTGGAGGAGGTGAAGAGGAAGTGAACAATAATGACAGTCTTGAAGGTTCCAGCAAACAAGCAGCATCCAAGCCTGGGAAAAAGAGGCCTTTGCCAGCTGAAGAAAGctcatcttcctcctcctcaaAGGGAAAAAGACGAAGGCTGGACTCTTCAGCCAACCTCCCAGAAAAGGCCTGCTGGTTCTGGGCTCAGAGACACAAGGTGTGGGCCGGCCGCAGGAAGGTCCGAAGAGATCTGCTGAAAACGAGCGACGAGGCCTCCAAGCCTGAAGGAGGGTGTAGAAGCATTGAAAGCAGGGTAACGCAGTGCATCGTTGAGAAGGAGGAGGACCCCAAAGATCTGGTGGAGTTCAAGGTGGACGCGGAGGTATTGGGTGGAGGAGAAAACACAAAGGCAGTGCTCAAGTTTACGCCGACGAATGACCTTGCAGGATATTTTCAGgacttctttcattttctcgAGTCATTTCTGCCTAAGATGGTGGAAACACTGCTATCAAAGCCAgagtagttttttttgttgttgctgtttcTGAATGTGTTTGCCCTCAATACGCATGTCCTCATTATTGTTTTTGCGGTTAATACAGGTTCGAAATAAATTTTGAACTACTTTTGTAGTGGTAATAAAATGCCTTGAAAGAGTTATAATCGAGATATTACAAAAAATTTGGTAATTAACAACAATCCTTTGGCATGGTTTTGTTgaactagttttctttttttgttaagttgtTAAGATTAATAATTGTTACTTTTTCTTGTACGACAAATGTTTTGTTATGAACATTTTAATAGTTTctgtttatgttgtgttttgggttgatttattttcatacaaaaaCTAATGTTTGTGCCCAAGTACAGATTTCAGCTTACTGAAAGTAGAGCAAGCTGAACACGAAGCTtattaaacaagaaaataagCGAAAA

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0016180 snRNA processing biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function
GO:0050265 RNA uridylyltransferase activity molecular_function

KEGG:

id description
K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255149.3 True 2919 mRNA 0.49 10 15407485 15423095

Neighbor

gene id symbol gene type direction distance location
LOC103029630 NA coding upstream 1129 15393015 ~ 15406356 (+)
LOC103030376 raraa,rara,LOC108410801,LOC107678286,LOC107745620,LOC107716487 coding upstream 23597 15224452 ~ 15383888 (+)
gjd3 gjd3 coding upstream 271582 15134302 ~ 15135903 (+)
top2a top2a coding upstream 274232 15116824 ~ 15133253 (+)
LOC103032173 NA coding upstream 371531 15032389 ~ 15035954 (+)
LOC103028270 mpp2,LOC108410806,LOC108273574 coding downstream 18472 15441567 ~ 15520594 (+)
LOC103033971 NA coding downstream 198216 15621311 ~ 15672444 (+)
LOC103023844 LOC108443155,LOC106596407,LOC107689097 coding downstream 385110 15808205 ~ 15811853 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107745661 coding downstream 726743 16149838 ~ 16175195 (+)
arid5b arid5b,LOC107727057 coding downstream 835065 16258160 ~ 16397388 (+)
G36560 NA non-coding upstream 27557 15376282 ~ 15379928 (+)
G36532 NA non-coding upstream 207412 15199822 ~ 15200073 (+)
G36524 NA non-coding upstream 226407 15177106 ~ 15181078 (+)
LOC111192405 NA non-coding upstream 255357 15150171 ~ 15152128 (+)
G36512 NA non-coding upstream 317109 15086356 ~ 15090376 (+)
G36582 psmc5,LOC102777430,LOC107684752 non-coding downstream 118019 15541114 ~ 15547526 (+)
G36584 NA non-coding downstream 184997 15608092 ~ 15679320 (+)
G36618 NA non-coding downstream 325679 15748774 ~ 15774590 (+)
G36708 NA non-coding downstream 449453 15872548 ~ 15879307 (+)
G36706 NA non-coding downstream 451319 15874414 ~ 15875884 (+)
G36439 LOC103041415 other upstream 616652 14789380 ~ 14790833 (+)
LOC107197918 NA other upstream 839573 14564925 ~ 14567912 (+)
G36371 NA other upstream 943846 14463137 ~ 14463639 (+)
LOC103039668 LOC108435045 other upstream 1886783 13502246 ~ 13520702 (+)
G35995 NA other upstream 2704429 12702305 ~ 12703056 (+)
LOC103028998 pyyb,LOC103028998,LOC108410797,LOC107745683,LOC107569181,LOC107684781,LOC107695522,LOC107753323,LOC107560546 other downstream 9734 15432829 ~ 15440157 (+)
cabcoco1 NA other downstream 790695 16213790 ~ 16233839 (+)
sun1 NA other downstream 1577287 17000382 ~ 17040957 (+)
phf5a phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 other downstream 1778402 17201497 ~ 17205033 (+)
cby1 cby1 other downstream 1809725 17232820 ~ 17234559 (+)

Expression


Co-expression Network